Rh4AG053200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000213
Physical Location & Seq
Forward (+)
11159673 .. 11162957
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG053200.1

Sequence Viewer

Length: 387 bp
ATGTCCTCCCAAAAACAGCTTGACCTACCCACCAGCGACGGCGAAGAGGAGAGGCAGCAACACCCGCTCCGGAAGACCAAAGAGAAGTTGATGTGGGAGTTGGAGCTGGAGGAGGGTGATAAGTCACTCTACATGTGTTGTCTAGAGCACAGGAGCGACTGGGTGGCTTATGTTGTCCACGCCATCAAACTGTCGGATTTGTTATCATATTCGGCGGTGGGGGACGAGCCACCGCGATTACGGCAAGTGGCTTATAAGGCCGGGTCGCATCTCCCCGGCTCTGTGGGTTGCGTATATCCTATCAGGTCTTTTAGTTCTGCACTTGCTGTCCTAAACATGTGGAATTATTGTCTTTCAAAAGGGTTGTTGCTTGTGCTTTTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

6.19

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 3 cut(s) 65, 215, 233
AflIII ACRYGT 2 cut(s) 132, 336
AgsI TTSAA 1 cut(s) 357
AluBI AGCT 2 cut(s) 19, 106
AluI AGCT 2 cut(s) 19, 106
Alw21I GWGCWC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 55
AsuC2I CCSGG 2 cut(s) 262, 276
AsuHPI GGTGA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 55, 257
BcnI CCSGG 2 cut(s) 262, 276
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 262, 276
BmrFI CCNGG 2 cut(s) 262, 276
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 262, 276
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse1I ACTGG 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 62, 125
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 70, 261, 276
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 69
BspACI CCGC 3 cut(s) 65, 215, 233
BspANI GGCC 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 39
BstFNI CGCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 64, 241, 257
BstNSI RCATGY 2 cut(s) 136, 340
BstSCI CCNGG 2 cut(s) 260, 274
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 260
CviAII CATG 2 cut(s) 133, 337
CviJI RGCY 7 cut(s) 19, 106, 167, 229, 251, 260, 279
CviKI_1 RGCY 7 cut(s) 19, 106, 167, 229, 251, 260, 279
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
FaeI CATG 2 cut(s) 136, 340
FaiI YATR 6 cut(s) 134, 171, 208, 255, 295, 338
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 132, 336
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 260
HapII CCGG 3 cut(s) 70, 261, 276
Hin1II CATG 2 cut(s) 136, 340
HpaII CCGG 3 cut(s) 70, 261, 276
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 70, 143
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 241, 257
Hsp92II CATG 2 cut(s) 136, 340
Kpn2I TCCGGA 1 cut(s) 69
LmnI GCTCC 3 cut(s) 72, 103, 153
LpnPI CCDG 8 cut(s) 46, 83, 92, 136, 145, 274, 289, 289
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 123
MbiI CCGCTC 1 cut(s) 67
MboII GAAGA 2 cut(s) 56, 85
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 81, 174
MnlI CCTC 5 cut(s) 16, 40, 45, 103, 106
MroI TCCGGA 1 cut(s) 69
MspI CCGG 3 cut(s) 70, 261, 276
MspR9I CCNGG 2 cut(s) 262, 276
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 64, 241, 257
NciI CCSGG 2 cut(s) 262, 276
NlaIII CATG 2 cut(s) 136, 340
NmuCI GTSAC 1 cut(s) 123
NspI RCATGY 2 cut(s) 136, 340
PciI ACATGT 2 cut(s) 132, 336
PkrI GCNGC 1 cut(s) 57
PscI ACATGT 2 cut(s) 132, 336
PsiI TTATAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 262, 276
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 21, 27, 108, 308
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 1 cut(s) 343
SsiI CCGC 3 cut(s) 65, 215, 233
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 260, 274
TaaI ACNGT 1 cut(s) 192
TasI AATT 1 cut(s) 343
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 2 cut(s) 136, 340
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.