Rmu_sc0000259.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000259.1
OG0000213
Physical Location & Seq
Forward (+)
76016 .. 76693
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000259.1_g000016.1.cds

Sequence Viewer

Length: 678 bp
atgtcgcccaaaaccgctctcaacctagccaacagagccagcgatggcgaagaagaagggcgtcatcggcttcgacgcggccgtgaaccaccggccgataagtacaggaggtctaagaagaagaagagaagtgagaagttgaagttgaacgaggaggaggctaagaagtctctgtacatatgtcacattgaacaccaccctggagagtgggtcgcttatgttgtccgcgccatcaagttgtccgatttgttatcctcctcctccgatgatgatgatgatttgaaattacggcaagtgggttataaagcaggggatgaactccccggttctgtgggttgcggtgtgtggggctcccggattgttttcgccgccggcatgaaaccctgcgcccgtatgccttcattcgatcgtcccgacatagtttggcatagacatgtttatgcctttgaaactgaccccaacaagcagcctcgtgataatagtagaattaccaagatggatggcacattagttgaagccaagtttcgtccacggatggaggagctggggggcaaactgtatgcactttcatataggctggtggctgatcctcccgcatttgaggttgcagatgtaatgaactgtagaaagaattacagtatagcaagtgtaagcccctctataaacaaatccctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

9.36

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 17
AccII CGCG 2 cut(s) 78, 228
AciI CCGC 6 cut(s) 15, 78, 226, 339, 369, 594
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 2 cut(s) 79, 93
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 2 cut(s) 104, 176
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 6 cut(s) 142, 148, 191, 283, 449, 515
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 544
AluI AGCT 1 cut(s) 544
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 581
AoxI GGCC 2 cut(s) 79, 93
ApeKI GCWGC 1 cut(s) 466
AspLEI GCGC 2 cut(s) 230, 389
AsuC2I CCSGG 2 cut(s) 324, 355
BanII GRGCYC 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 1 cut(s) 471
BbvI GCAGC 1 cut(s) 478
BccI CCATC 5 cut(s) 38, 239, 490, 494, 529
BceAI ACGGC 2 cut(s) 66, 305
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 2 cut(s) 324, 355
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 622
BisI GCNGC 3 cut(s) 79, 369, 467
BlsI GCNGC 3 cut(s) 80, 370, 468
Bme1390I CCNGG 3 cut(s) 201, 324, 355
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 3 cut(s) 201, 324, 355
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 324, 355
BsaHI GRCGYC 1 cut(s) 61
BsaJI CCNNGG 3 cut(s) 199, 322, 530
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse118I RCCGGY 2 cut(s) 91, 371
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 199, 322, 530
BseGI GGATG 3 cut(s) 319, 505, 540
BseRI GAGGAG 5 cut(s) 167, 170, 247, 250, 554
BseX3I CGGCCG 2 cut(s) 79, 93
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 78, 228
Bsh1285I CGRYCG 3 cut(s) 82, 96, 409
BshFI GGCC 2 cut(s) 81, 95
BsiEI CGRYCG 3 cut(s) 82, 96, 409
BsiSI CCGG 4 cut(s) 92, 324, 355, 372
BslFI GGGAC 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 2 cut(s) 81, 95
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 406, 586
BspACI CCGC 6 cut(s) 15, 78, 226, 339, 369, 594
BspANI GGCC 2 cut(s) 81, 95
BspFNI CGCG 2 cut(s) 78, 228
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 581
BsrBI CCGCTC 1 cut(s) 17
BsrFI RCCGGY 2 cut(s) 91, 371
BsrGI TGTACA 1 cut(s) 174
BssAI RCCGGY 2 cut(s) 91, 371
BssECI CCNNGG 3 cut(s) 199, 322, 530
BssMI GATC 2 cut(s) 406, 586
BssNI GRCGYC 1 cut(s) 61
BssSI CACGAG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 558, 623, 638
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 40, 373
BstDEI CTNAG 2 cut(s) 114, 162
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 3 cut(s) 319, 505, 540
BstFNI CGCG 2 cut(s) 78, 228
BstHHI GCGC 2 cut(s) 230, 389
BstKTI GATC 2 cut(s) 409, 589
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 406, 586
BstMCI CGRYCG 3 cut(s) 82, 96, 409
BstMWI GCNNNNNNNGC 2 cut(s) 35, 67
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 3 cut(s) 199, 322, 353
BstSFI CTRYAG 1 cut(s) 622
BstUI CGCG 2 cut(s) 78, 228
BstV1I GCAGC 1 cut(s) 478
BstZI CGGCCG 2 cut(s) 79, 93
BsuRI GGCC 2 cut(s) 81, 95
BtgI CCRYGG 1 cut(s) 530
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 3 cut(s) 319, 505, 540
Cac8I GCNNGC 2 cut(s) 40, 373
CfoI GCGC 2 cut(s) 230, 389
Cfr10I RCCGGY 2 cut(s) 91, 371
CseI GACGC 2 cut(s) 50, 84
Csp6I GTAC 2 cut(s) 103, 175
CviAII CATG 2 cut(s) 376, 434
CviQI GTAC 2 cut(s) 103, 175
DdeI CTNAG 2 cut(s) 114, 162
DpnI GATC 2 cut(s) 408, 588
DpnII GATC 2 cut(s) 406, 586
EaeI YGGCCR 2 cut(s) 79, 93
EagI CGGCCG 2 cut(s) 79, 93
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EclXI CGGCCG 2 cut(s) 79, 93
Eco24I GRGCYC 1 cut(s) 353
Eco52I CGGCCG 2 cut(s) 79, 93
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 2 cut(s) 379, 437
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 375, 433
FauI CCCGC 1 cut(s) 601
FauNDI CATATG 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 79, 369, 467
FokI GGATG 3 cut(s) 326, 512, 547
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 3 cut(s) 79, 369, 467
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 229, 388
GluI GCNGC 3 cut(s) 79, 369, 467
GsaI CCCAGC 1 cut(s) 548
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 81, 95
HapII CCGG 4 cut(s) 92, 324, 355, 372
HgaI GACGC 2 cut(s) 50, 84
HhaI GCGC 2 cut(s) 230, 389
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 2 cut(s) 379, 437
Hin6I GCGC 2 cut(s) 228, 387
HinP1I GCGC 2 cut(s) 228, 387
HpaII CCGG 4 cut(s) 92, 324, 355, 372
Hpy166II GTNNAC 2 cut(s) 86, 530
Hpy188I TCNGA 2 cut(s) 244, 265
Hpy188III TCNNGA 2 cut(s) 413, 473
Hpy8I GTNNAC 2 cut(s) 86, 530
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 50, 408
HpyCH4III ACNGT 3 cut(s) 558, 623, 638
HpyCH4V TGCA 2 cut(s) 563, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 67
HpyF3I CTNAG 2 cut(s) 114, 162
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 2 cut(s) 379, 437
HspAI GCGC 2 cut(s) 228, 387
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 406, 586
LmnI GCTCC 2 cut(s) 356, 541
Lsp1109I GCAGC 1 cut(s) 478
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 408, 588
MbiI CCGCTC 1 cut(s) 17
MboI GATC 2 cut(s) 406, 586
MboII GAAGA 5 cut(s) 62, 65, 130, 133, 136
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 3 cut(s) 284, 486, 631
MroNI GCCGGC 1 cut(s) 371
MslI CAYNNNNRTG 2 cut(s) 432, 438
MspI CCGG 4 cut(s) 92, 324, 355, 372
MspR9I CCNGG 3 cut(s) 201, 324, 355
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 78, 228
MwoI GCNNNNNNNGC 2 cut(s) 35, 67
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 2 cut(s) 324, 355
NdeI CATATG 1 cut(s) 179
NdeII GATC 2 cut(s) 406, 586
NgoMIV GCCGGC 1 cut(s) 371
NlaIII CATG 2 cut(s) 379, 437
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 437
PciI ACATGT 1 cut(s) 433
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 411
PdiI GCCGGC 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 3 cut(s) 80, 370, 468
Ple19I CGATCG 1 cut(s) 409
PscI ACATGT 1 cut(s) 433
PsiI TTATAA 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 352
PvuI CGATCG 1 cut(s) 409
RsaI GTAC 2 cut(s) 104, 176
RsaNI GTAC 2 cut(s) 103, 175
RseI CAYNNNNRTG 2 cut(s) 432, 438
SatI GCNGC 3 cut(s) 79, 369, 467
Sau3AI GATC 2 cut(s) 406, 586
ScrFI CCNGG 3 cut(s) 201, 324, 355
SduI GDGCHC 1 cut(s) 353
SetI ASST 4 cut(s) 27, 113, 546, 606
SfcI CTRYAG 1 cut(s) 622
SmiMI CAYNNNNRTG 2 cut(s) 432, 438
Sse9I AATT 3 cut(s) 284, 486, 631
SsiI CCGC 6 cut(s) 15, 78, 226, 339, 369, 594
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 199, 322, 353
TaaI ACNGT 3 cut(s) 558, 623, 638
TaqI TCGA 2 cut(s) 73, 405
TasI AATT 3 cut(s) 284, 486, 631
TatI WGTACW 2 cut(s) 102, 174
TauI GCSGC 2 cut(s) 81, 371
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 330, 390, 392, 558, 632
TspGWI ACGGA 1 cut(s) 547
XceI RCATGY 1 cut(s) 437
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.