Rmu_sc0000236.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000236.1
OG0000213
Physical Location & Seq
Reverse (-)
69426 .. 69689
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000236.1_g000029.1.cds

Sequence Viewer

Length: 264 bp
atgaagaataagaagataataagagtgtcagaaaaggtgaagaagaaaacgaagaagttgaagctggaggaggaggaagctaagaagtcactctacatacgtttcgttgaacaacgcgagggtgggagcatcgctattattgttcgtaccatcaaattatcagacttgttatcctccgatgaagaattgcaattgcggaaagtggcttacaaggcaggggaagatgttcctgattttgttggttgtgctgttttcggctcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.89

Weight (kDa)

9.52

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 196
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 2 cut(s) 61, 110
AluBI AGCT 2 cut(s) 64, 80
AluI AGCT 2 cut(s) 64, 80
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 49
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
BccI CCATC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 83, 86
Bsh1236I CGCG 1 cut(s) 117
BspACI CCGC 1 cut(s) 196
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstUI CGCG 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 115
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 4 cut(s) 64, 80, 206, 258
CviKI_1 RGCY 4 cut(s) 64, 80, 206, 258
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 81
FaiI YATR 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 86
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 31, 163, 178
Hpy188III TCNNGA 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 100
LmnI GCTCC 2 cut(s) 126, 263
LpnPI CCDG 3 cut(s) 50, 201, 243
LweI GCATC 1 cut(s) 138
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 87
MboII GAAGA 7 cut(s) 16, 25, 52, 55, 64, 194, 233
MfeI CAATTG 1 cut(s) 191
MluCI AATT 3 cut(s) 155, 185, 191
MnlI CCTC 5 cut(s) 61, 64, 67, 112, 184
MroXI GAANNNNTTC 1 cut(s) 225
MunI CAATTG 1 cut(s) 191
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 259
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SetI ASST 4 cut(s) 39, 66, 82, 103
SfaNI GCATC 1 cut(s) 138
SgeI CNNG 7 cut(s) 77, 128, 130, 178, 223, 228, 242
Sse9I AATT 3 cut(s) 155, 185, 191
SsiI CCGC 1 cut(s) 196
TaiI ACGT 1 cut(s) 103
TasI AATT 3 cut(s) 155, 185, 191
TseFI GTSAC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 17, 195
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.