Rmu_sc0000226.1_g000014

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000226.1
OG0000213
Physical Location & Seq
Forward (+)
53173 .. 54033
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000226.1_g000014.1.cds

Sequence Viewer

Length: 861 bp
atggcccccagaaaacctcataacctagcctccgccaccagcaatggcgaagaggagacgccccatcatcggcttcgaccctgcagtgtacatcatgggcagaagaagaagaagaagaaaagccaagggacagagaaggagaagaagaagaaactgaaattgaatgaggtggagggtaataagtcactctacctgtgcaccattgaataccaagagggagaacgagcggcttatgttgtgcggtgcattaaactatcagatctcttatgctcatcagatgatgatccagtgcaattgagccaagtggcttatgccgctggggatcatctccccgcttccatcggtggcggtgttttcggctcccagattattttcgccggtggcgtgaaacccagcttcccaataatttcattacttcattccgacttagtttggcatagagatgtttatgccttcgaaactgaccccaacaagcagcagcagcagcagcctcatgatattaccaagatggatgccactctactacaagccaagttttaccctctaatcgtggagcttggcgggaaactctacgctctttccggtttgcgggtctccgatccgccttcatttgaggtatttgaccccaatgtgggcaagtgggcagctttgcctgaacctccattcttccaaattggctctccatattgggaagatgccgaattctcttatgcaattacgggcaccaagatctttgcctcccatgaaaaatgtccagtgttctgctttgacgtcgcccacccagacagagaatggagactggtctctactatgtgccaaacgccgcccgtttcccttccggcacaaaactctagtccttga

Protein Analysis

286

Amino Acids

31.8

Weight (kDa)

6.83

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 722
AccBSI CCGCTC 1 cut(s) 227
AclWI GGATC 3 cut(s) 278, 330, 593
AcsI RAATTY 1 cut(s) 701
AcyI GRCGYC 2 cut(s) 59, 771
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 4 cut(s) 69, 588, 631, 632
AgsI TTSAA 2 cut(s) 163, 206
AluBI AGCT 3 cut(s) 396, 556, 647
AluI AGCT 3 cut(s) 396, 556, 647
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 4 cut(s) 50, 598, 790, 808
Alw44I GTGCAC 1 cut(s) 196
AlwI GGATC 3 cut(s) 278, 330, 593
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 6 cut(s) 475, 478, 481, 484, 487, 644
ApoI RAATTY 1 cut(s) 701
ArsI GACNNNNNNTTYG 1 cut(s) 838
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 456
BaeGI GKGCMC 2 cut(s) 200, 725
BanI GGYRCC 1 cut(s) 722
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 6 cut(s) 487, 490, 493, 496, 499, 656
BccI CCATC 3 cut(s) 72, 347, 502
BcoDI GTCTC 4 cut(s) 50, 598, 790, 808
BfaI CTAG 2 cut(s) 26, 852
BfmI CTRYAG 1 cut(s) 82
BglII AGATCT 2 cut(s) 259, 729
BisI GCNGC 9 cut(s) 228, 315, 476, 479, 482, 485, 488, 645, 824
BlsI GCNGC 9 cut(s) 229, 316, 477, 480, 483, 486, 489, 646, 825
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 361, 724
BmsI GCATC 2 cut(s) 502, 685
Bpu14I TTCGAA 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 2 cut(s) 59, 771
BsaI GGTCTC 2 cut(s) 598, 808
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 588, 631, 632
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 287, 755, 804
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 69, 588, 631, 632
BseMI GCAATG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 287, 755, 804
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 2 cut(s) 200, 725
BseXI GCAGC 6 cut(s) 487, 490, 493, 496, 499, 656
BseYI CCCAGC 2 cut(s) 317, 392
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 3 cut(s) 378, 582, 839
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 69, 588, 631, 632
BsmAI GTCTC 4 cut(s) 50, 598, 790, 808
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 598, 808
Bsp119I TTCGAA 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 200, 725
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 5 cut(s) 259, 283, 322, 598, 729
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 3 cut(s) 6, 361, 724
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 3 cut(s) 278, 330, 593
BspT104I TTCGAA 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 722
BspTNI GGTCTC 2 cut(s) 598, 808
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 3 cut(s) 287, 755, 804
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 5 cut(s) 259, 283, 322, 598, 729
BssNI GRCGYC 2 cut(s) 59, 771
BssT1I CCWWGG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 2 cut(s) 59, 771
BstAUI TGTACA 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 5 cut(s) 262, 286, 325, 601, 732
BstMAI GTCTC 4 cut(s) 50, 598, 790, 808
BstMBI GATC 5 cut(s) 259, 283, 322, 598, 729
BstMWI GCNNNNNNNGC 4 cut(s) 314, 481, 484, 487
BstSFI CTRYAG 1 cut(s) 82
BstSLI GKGCMC 2 cut(s) 200, 725
BstV1I GCAGC 6 cut(s) 487, 490, 493, 496, 499, 656
BstX2I RGATCY 2 cut(s) 259, 729
BstYI RGATCY 2 cut(s) 259, 729
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 517
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 91, 294, 762
CciI TCATGA 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 95, 494, 743
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 427
DpnI GATC 5 cut(s) 261, 285, 324, 600, 731
DpnII GATC 5 cut(s) 259, 283, 322, 598, 729
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 2 cut(s) 22, 591
Eco130I CCWWGG 1 cut(s) 124
Eco31I GGTCTC 2 cut(s) 598, 808
EcoRI GAATTC 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 3 cut(s) 98, 497, 746
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 94, 493, 742
FauI CCCGC 3 cut(s) 340, 554, 582
Fnu4HI GCNGC 9 cut(s) 228, 315, 476, 479, 482, 485, 488, 645, 824
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 9 cut(s) 228, 315, 476, 479, 482, 485, 488, 645, 824
FspBI CTAG 2 cut(s) 26, 852
GluI GCNGC 9 cut(s) 228, 315, 476, 479, 482, 485, 488, 645, 824
GsaI CCCAGC 2 cut(s) 321, 396
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 378, 582, 839
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 59, 771
Hin1II CATG 3 cut(s) 98, 497, 746
HpaII CCGG 3 cut(s) 378, 582, 839
Hpy166II GTNNAC 2 cut(s) 89, 198
Hpy188I TCNGA 4 cut(s) 259, 277, 424, 598
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 2 cut(s) 89, 198
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 4 cut(s) 130, 463, 615, 845
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 5 cut(s) 84, 198, 246, 292, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 481, 484, 487
HpyF3I CTNAG 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 771
Hsp92I GRCGYC 2 cut(s) 59, 771
Hsp92II CATG 3 cut(s) 98, 497, 746
Kzo9I GATC 5 cut(s) 259, 283, 322, 598, 729
LmnI GCTCC 2 cut(s) 365, 553
Lsp1109I GCAGC 6 cut(s) 487, 490, 493, 496, 499, 656
LweI GCATC 2 cut(s) 502, 685
MaeI CTAG 2 cut(s) 26, 852
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 1 cut(s) 183
MalI GATC 5 cut(s) 261, 285, 324, 600, 731
MbiI CCGCTC 1 cut(s) 227
MboI GATC 5 cut(s) 259, 283, 322, 598, 729
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 2 cut(s) 259, 729
MhlI GDGCHC 2 cut(s) 200, 725
MluCI AATT 6 cut(s) 158, 293, 405, 672, 701, 714
MmeI TCCRAC 1 cut(s) 447
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 3 cut(s) 378, 582, 839
MunI CAATTG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 314, 481, 484, 487
NdeII GATC 5 cut(s) 259, 283, 322, 598, 729
NlaIII CATG 3 cut(s) 98, 497, 746
NlaIV GGNNCC 3 cut(s) 6, 361, 724
NmuCI GTSAC 1 cut(s) 183
NspV TTCGAA 1 cut(s) 456
PagI TCATGA 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PkrI GCNGC 9 cut(s) 229, 316, 477, 480, 483, 486, 489, 646, 825
PspFI CCCAGC 2 cut(s) 317, 392
PspN4I GGNNCC 3 cut(s) 6, 361, 724
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 86
PsuI RGATCY 2 cut(s) 259, 729
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 9 cut(s) 228, 315, 476, 479, 482, 485, 488, 645, 824
Sau3AI GATC 5 cut(s) 259, 283, 322, 598, 729
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 2 cut(s) 200, 725
SfaNI GCATC 2 cut(s) 502, 685
SfcI CTRYAG 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 456
SgrAI CRCCGGYG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 441
Sse9I AATT 6 cut(s) 158, 293, 405, 672, 701, 714
SspMI CTAG 2 cut(s) 26, 852
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 774
TaqI TCGA 2 cut(s) 76, 456
TasI AATT 6 cut(s) 158, 293, 405, 672, 701, 714
TatI WGTACW 1 cut(s) 88
TauI GCSGC 3 cut(s) 230, 317, 826
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 3 cut(s) 91, 294, 762
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 6 cut(s) 475, 478, 481, 484, 487, 644
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 4 cut(s) 399, 407, 597, 759
TspRI CASTG 3 cut(s) 91, 294, 762
VneI GTGCAC 1 cut(s) 196
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 789
XspI CTAG 2 cut(s) 26, 852
ZraI GACGTC 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.