Rorug02G0012100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000213
Physical Location & Seq
Reverse (-)
1061053 .. 1063939
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0012100.1

Sequence Viewer

Length: 585 bp
ATGATCGGAGTCGGGAAGATGAAGCAGTACTCTAACGTGCTCGACAGGCCTCTCAGCAAAGGAAAACAAGAGGTGAGTTTGAGTGCTTTTGCGTTCTTGTTTTCGGAGCTTGTGCAGTACAATCAGACACAGGTTGACAACATTGCCGAGCTAGAAAGAAGGCTGGAAGATGCAGGCTATGCTGTTGGAGCTCGAGTTCTGGAGCTTCTTTGCCATAGGGATAAGGGAAACAGAAGGGAGACACGACTGTTGGGTATCCTGTCTTTTGTGCATAGCACAGTATGGAAGGTGTTATTCGGAAAGGTAGCTGATTCACTAGAGAAAGGCACTGAACATGAAGACGAGTACATGATTAGCGAGAAGGAACTCCTTGTGAACAGATTTATTTCGATTCCAAAAGACATGGGAACATTTAATTGTGGAGCATTTGTTGCTGGAATTGTAAGGGGTGTTTTGGATGGTGCTGGTTTTCCAGCTGTGGTAACAGCTCATTTTGTACCAGTGGAAGGTCAGCAACGACCTCGGACAACCATTTTGATAAAATTTGCTGAAGAGGTACTACGAAGGGAAGCAAGGTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

7.79

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 182 4e-47 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 5 cut(s) 29, 119, 347, 498, 558
AfiI CCNNNNNNNGG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 7 cut(s) 109, 151, 191, 205, 308, 476, 488
AluI AGCT 7 cut(s) 109, 151, 191, 205, 308, 476, 488
Alw21I GWGCWC 2 cut(s) 42, 193
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 542
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 1 cut(s) 193
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 42, 193
BccI CCATC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciVI GTATCC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 152, 317
BfuI GTATCC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 192
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 521
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 42, 193
BsiHKCI CYCGRG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 42, 193
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 249, 280
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 2 cut(s) 179, 431
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 4 cut(s) 46, 179, 188, 431
BstV2I GAAGAC 1 cut(s) 345
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 327, 507
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 5 cut(s) 28, 118, 346, 497, 557
CviAII CATG 3 cut(s) 335, 349, 403
CviQI GTAC 5 cut(s) 28, 118, 346, 497, 557
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 3 cut(s) 338, 352, 406
FaiI YATR 7 cut(s) 180, 216, 273, 283, 336, 350, 404
FatI CATG 3 cut(s) 334, 348, 402
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 193
FspBI CTAG 2 cut(s) 152, 317
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 3 cut(s) 338, 352, 406
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 9, 311, 391
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 136, 376
Hpy188I TCNGA 5 cut(s) 8, 106, 126, 299, 525
Hpy188III TCNNGA 2 cut(s) 13, 200
Hpy8I GTNNAC 2 cut(s) 136, 376
HpyAV CCTTC 6 cut(s) 153, 228, 280, 355, 500, 558
HpyCH4III ACNGT 2 cut(s) 249, 280
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 115, 173, 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 179, 188, 431
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 338, 352, 406
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 4 cut(s) 106, 188, 202, 422
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 152, 317
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 28, 179, 350, 563
MhlI GDGCHC 2 cut(s) 42, 193
MluCI AATT 3 cut(s) 415, 438, 542
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 60, 64, 531, 547
MseI TTAA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 476
MwoI GCNNNNNNNGC 4 cut(s) 46, 179, 188, 431
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 338, 352, 406
NmeAIII GCCGAG 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 49
PfeI GAWTC 2 cut(s) 311, 391
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 5 cut(s) 29, 119, 347, 498, 558
RsaNI GTAC 5 cut(s) 28, 118, 346, 497, 557
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 42, 193
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 3 cut(s) 415, 438, 542
SseBI AGGCCT 1 cut(s) 49
SspMI CTAG 2 cut(s) 152, 317
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 49
TaaI ACNGT 2 cut(s) 249, 280
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 42, 193, 389
TasI AATT 3 cut(s) 415, 438, 542
TatI WGTACW 3 cut(s) 27, 117, 345
TfiI GAWTC 2 cut(s) 311, 391
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 334, 507
TspDTI ATGAA 2 cut(s) 35, 351
TspRI CASTG 2 cut(s) 334, 507
XapI RAATTY 1 cut(s) 542
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 2 cut(s) 152, 317
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.