FvH4_1g03820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Reverse (-)
2037103 .. 2037507
405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03820.t1

Sequence Viewer

Length: 321 bp
ATGTCGTTAAACCCAGAAAGCTCAAGCGGGTTGAAGCTGAAGGACGAATATGCTGATAAGTCTCTATTCATCTGTAGCTTTGAATCTTACGAAAAGTCAATCCCTACTGCGAGACAAGTGGCGAATCTGGTCGACAATGATCTCCCATATGAAGGGGGTTGCGGTGTTTTGGGCAAGATTGTTTTCGTCAGCGGTTTGAAACCCAATCCCAATCCGGAAGGTTTGGGACCGTTCGGCCCTGATCCCAGCACACATGCTTATGCCTTGATGAGGTATTTGACCCCAACAGGGTACTTGGTCACGTCTGCCAAAATATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.37

Weight (kDa)

5.24

Isoelectric Point (pI)

19.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 3 cut(s) 27, 162, 192
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 152, 270, 288
AgsI TTSAA 3 cut(s) 34, 83, 199
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 3 cut(s) 21, 37, 78
AluI AGCT 3 cut(s) 21, 37, 78
Alw26I GTCTC 2 cut(s) 66, 106
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 227, 236
AvaII GGWCC 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 66, 106
BfmI CTRYAG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 227, 236
BmiI GGNNCC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 270, 288
BseAI TCCGGA 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 152, 270, 288
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 152, 270, 288
BsmAI GTCTC 2 cut(s) 66, 106
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 2 cut(s) 139, 241
BspACI CCGC 3 cut(s) 27, 162, 192
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 236
BssMI GATC 2 cut(s) 139, 241
Bst4CI ACNGT 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 268
BstKTI GATC 2 cut(s) 142, 244
BstMAI GTCTC 2 cut(s) 66, 106
BstMBI GATC 2 cut(s) 139, 241
BstNSI RCATGY 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 237
BtrI CACGTC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 227, 236
Csp6I GTAC 1 cut(s) 292
CviAII CATG 1 cut(s) 254
CviJI RGCY 4 cut(s) 21, 37, 78, 237
CviKI_1 RGCY 4 cut(s) 21, 37, 78, 237
CviQI GTAC 1 cut(s) 292
DpnI GATC 2 cut(s) 141, 243
DpnII GATC 2 cut(s) 139, 241
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 268
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 51, 148, 150, 255, 261
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 20
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 215
Hin1II CATG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 83, 124
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 34, 146, 212
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 139, 241
LpnPI CCDG 6 cut(s) 27, 113, 228, 252, 259, 273
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 141, 243
MboI GATC 2 cut(s) 139, 241
MnlI CCTC 1 cut(s) 264
MroI TCCGGA 1 cut(s) 214
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 139, 241
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 257
PfeI GAWTC 2 cut(s) 83, 124
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 227, 236
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 258
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 2 cut(s) 139, 241
Sau96I GGNCC 2 cut(s) 227, 236
SetI ASST 6 cut(s) 23, 39, 80, 223, 275, 305
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SsiI CCGC 3 cut(s) 27, 162, 192
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 132
TfiI GAWTC 2 cut(s) 83, 124
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 58, 165
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 268
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.