Rmu_sc0000236.1_g000036

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000236.1
OG0000213
Physical Location & Seq
Reverse (-)
87937 .. 88985
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000236.1_g000036.1.cds

Sequence Viewer

Length: 966 bp
atgatgaagaaggagaagaagaagaaaataagagtatcagagaaggtgaagaagacaacaaagaagttgaagctcgaggaggaggaggctaagaagtcactctacatatgtttcattgaacaacgcaagggtgggagcgatgctattgttgttcgtaccatcaaattatccgacttgttatcctccgatgaagaattacaattgcggcaagtggcttataagattggggaagatgttcctgatttggttggttgtgctgttttcggctcccaaatcattttttccggtggcgtgagccccagcttgggttccggtgatagatttccgctaataagttctgaactctggaatagagatgttcatgccttcgaggttcatgacaatattttcaggaagatggatgcgactttacagagagggatattttcccctatgatggtggagctgagcgggaaagtgtacgttctttcctatgagttgatcgctgatcctccatcattcgaggtatttgaccctaaaataggcctgtggaagggtttgccccaacctccatttttccaacccagatctcgatatgactctcatacttccttcttttatgcaattgccggcaccaagatgtttgtgtcccatgacaaatgtccaatgttctgctttgacgttgcacacccaaacagagaatggagactagtccctactatgtgtggcggcggccctttccttttatggctaggagtttatcttttttccttggaggaaggtcaggaatccatagcaccgattggttatttgaagctgccatggtggccttatgaattgggttcggcagatggttgtgactttgtccacataggaggtcagaaagcctgcattcttatcacccaaacgactcctcacaccttcgaattccagaccaacccatccacttttcctctaccttttacggttggttgctttctgctgtaa

Protein Analysis

321

Amino Acids

36.29

Weight (kDa)

7.03

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 450
AciI CCGC 5 cut(s) 205, 326, 450, 708, 711
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 905
AfaI GTAC 2 cut(s) 157, 461
AfiI CCNNNNNNNGG 5 cut(s) 304, 305, 436, 521, 532
AgsI TTSAA 3 cut(s) 70, 119, 793
AhlI ACTAGT 1 cut(s) 688
AluBI AGCT 4 cut(s) 73, 303, 445, 796
AluI AGCT 4 cut(s) 73, 303, 445, 796
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 523, 712, 806
ApeKI GCWGC 1 cut(s) 796
ApoI RAATTY 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 713
AsuHPI GGTGA 3 cut(s) 58, 326, 871
AsuII TTCGAA 1 cut(s) 903
AvaI CYCGRG 1 cut(s) 74
BanI GGYRCC 1 cut(s) 611
BanII GRGCYC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 783
BccI CCATC 6 cut(s) 167, 391, 430, 502, 824, 928
BcoDI GTCTC 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 688
BfaI CTAG 2 cut(s) 689, 731
BglI GCCNNNNNGGC 1 cut(s) 805
BglII AGATCT 1 cut(s) 566
BisI GCNGC 4 cut(s) 206, 709, 712, 797
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 4 cut(s) 207, 710, 713, 798
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 3 cut(s) 268, 310, 613
BmsI GCATC 2 cut(s) 130, 391
BoxI GACNNNNGTC 1 cut(s) 639
BpiI GAAGAC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 903
BsaJI CCNNGG 2 cut(s) 750, 800
BsaWI WCCGGW 2 cut(s) 284, 311
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 305, 436, 521, 532
Bse118I RCCGGY 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 750, 800
BseGI GGATG 2 cut(s) 406, 920
BseLI CCNNNNNNNGG 5 cut(s) 304, 305, 436, 521, 532
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 4 cut(s) 92, 95, 98, 882
BseXI GCAGC 1 cut(s) 783
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 3 cut(s) 525, 714, 808
BshNI GGYRCC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 285, 312, 609
BslFI GGGAC 2 cut(s) 613, 677
BslI CCNNNNNNNGG 5 cut(s) 304, 305, 436, 521, 532
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 2 cut(s) 613, 677
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 3 cut(s) 525, 714, 808
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 480, 487, 566
Bsp1720I GCTNAGC 1 cut(s) 446
Bsp19I CCATGG 1 cut(s) 800
BspACI CCGC 5 cut(s) 205, 326, 450, 708, 711
BspANI GGCC 3 cut(s) 525, 714, 808
BspCNI CTCAG 1 cut(s) 438
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 268, 310, 613
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 903
BspT107I GGYRCC 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 608
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 750, 800
BssMI GATC 3 cut(s) 480, 487, 566
BssT1I CCWWGG 2 cut(s) 750, 800
Bst4CI ACNGT 1 cut(s) 946
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 2 cut(s) 610, 868
BstDEI CTNAG 2 cut(s) 90, 446
BstDSI CCRYGG 1 cut(s) 800
BstENI CCTNNNNNAGG 2 cut(s) 519, 530
BstF5I GGATG 2 cut(s) 406, 920
BstKTI GATC 3 cut(s) 483, 490, 569
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 3 cut(s) 480, 487, 566
BstMWI GCNNNNNNNGC 1 cut(s) 805
BstPAI GACNNNNGTC 1 cut(s) 639
BstV1I GCAGC 1 cut(s) 783
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BsuRI GGCC 3 cut(s) 525, 714, 808
BtgI CCRYGG 1 cut(s) 800
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 406, 920
Cac8I GCNNGC 2 cut(s) 610, 868
CciI TCATGA 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 713
Csp6I GTAC 2 cut(s) 156, 460
CviAII CATG 4 cut(s) 362, 377, 632, 801
CviQI GTAC 2 cut(s) 156, 460
DdeI CTNAG 2 cut(s) 90, 446
DpnI GATC 3 cut(s) 482, 489, 568
DpnII GATC 3 cut(s) 480, 487, 566
Eco130I CCWWGG 2 cut(s) 750, 800
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 74
EcoNI CCTNNNNNAGG 2 cut(s) 519, 530
EcoRI GAATTC 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 750, 800
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 750, 800
FaeI CATG 4 cut(s) 365, 380, 635, 804
FaqI GGGAC 2 cut(s) 613, 677
FatI CATG 4 cut(s) 361, 376, 631, 800
FauI CCCGC 1 cut(s) 443
FauNDI CATATG 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 206, 709, 712, 797
FokI GGATG 2 cut(s) 413, 907
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 4 cut(s) 206, 709, 712, 797
FspBI CTAG 2 cut(s) 689, 731
GluI GCNGC 4 cut(s) 206, 709, 712, 797
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 3 cut(s) 525, 714, 808
HapII CCGG 3 cut(s) 285, 312, 609
Hin1II CATG 4 cut(s) 365, 380, 635, 804
HinfI GANTC 3 cut(s) 578, 767, 889
HpaII CCGG 3 cut(s) 285, 312, 609
HphI GGTGA 3 cut(s) 58, 326, 871
Hpy166II GTNNAC 2 cut(s) 460, 847
Hpy188I TCNGA 5 cut(s) 40, 172, 187, 340, 861
Hpy188III TCNNGA 7 cut(s) 239, 346, 377, 391, 570, 764, 910
Hpy8I GTNNAC 2 cut(s) 460, 847
HpyAV CCTTC 7 cut(s) 4, 37, 376, 526, 601, 752, 910
HpyCH4III ACNGT 1 cut(s) 946
HpyCH4IV ACGT 2 cut(s) 462, 660
HpyCH4V TGCA 3 cut(s) 602, 665, 870
HpyF10VI GCNNNNNNNGC 1 cut(s) 805
HpyF3I CTNAG 2 cut(s) 90, 446
HpySE526I ACGT 2 cut(s) 462, 660
Hsp92II CATG 4 cut(s) 365, 380, 635, 804
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Kzo9I GATC 3 cut(s) 480, 487, 566
LmnI GCTCC 3 cut(s) 135, 272, 442
Lsp1109I GCAGC 1 cut(s) 783
LweI GCATC 2 cut(s) 130, 391
MaeI CTAG 2 cut(s) 689, 731
MaeII ACGT 2 cut(s) 462, 660
MaeIII GTNAC 2 cut(s) 96, 836
MalI GATC 3 cut(s) 482, 489, 568
MbiI CCGCTC 1 cut(s) 450
MboI GATC 3 cut(s) 480, 487, 566
MboII GAAGA 9 cut(s) 19, 28, 31, 34, 61, 64, 203, 242, 406
MfeI CAATTG 2 cut(s) 200, 603
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 6 cut(s) 164, 194, 200, 603, 815, 905
MlyI GAGTC 2 cut(s) 572, 883
MmeI TCCRAC 2 cut(s) 195, 583
MroNI GCCGGC 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 3 cut(s) 285, 312, 609
MunI CAATTG 2 cut(s) 200, 603
Mva1269I GAATGC 1 cut(s) 870
MwoI GCNNNNNNNGC 1 cut(s) 805
NaeI GCCGGC 1 cut(s) 610
NcoI CCATGG 1 cut(s) 800
NdeI CATATG 1 cut(s) 107
NdeII GATC 3 cut(s) 480, 487, 566
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 4 cut(s) 365, 380, 635, 804
NlaIV GGNNCC 3 cut(s) 268, 310, 613
NmuCI GTSAC 2 cut(s) 96, 836
NspV TTCGAA 1 cut(s) 903
PaeR7I CTCGAG 1 cut(s) 74
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 1 cut(s) 525
PctI GAATGC 1 cut(s) 870
PdiI GCCGGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 767
PflFI GACNNNGTC 1 cut(s) 842
PkrI GCNGC 4 cut(s) 207, 710, 713, 798
PleI GAGTC 2 cut(s) 572, 883
PpsI GAGTC 2 cut(s) 572, 883
PshAI GACNNNNGTC 1 cut(s) 639
PsiI TTATAA 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 268, 310, 613
PspPI GGNCC 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 74
PsuI RGATCY 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 842
RsaI GTAC 2 cut(s) 157, 461
RsaNI GTAC 2 cut(s) 156, 460
RseI CAYNNNNRTG 1 cut(s) 617
SatI GCNGC 4 cut(s) 206, 709, 712, 797
Sau3AI GATC 3 cut(s) 480, 487, 566
Sau96I GGNCC 1 cut(s) 713
SchI GAGTC 2 cut(s) 572, 883
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 2 cut(s) 130, 391
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 903
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 688
Sse9I AATT 6 cut(s) 164, 194, 200, 603, 815, 905
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 5 cut(s) 205, 326, 450, 708, 711
SspI AATATT 1 cut(s) 385
SspMI CTAG 2 cut(s) 689, 731
StuI AGGCCT 1 cut(s) 525
StyI CCWWGG 2 cut(s) 750, 800
TaaI ACNGT 1 cut(s) 946
TaiI ACGT 2 cut(s) 465, 663
TaqI TCGA 5 cut(s) 75, 369, 501, 571, 903
TasI AATT 6 cut(s) 164, 194, 200, 603, 815, 905
TauI GCSGC 3 cut(s) 208, 711, 714
TfiI GAWTC 1 cut(s) 767
TseFI GTSAC 2 cut(s) 96, 836
TseI GCWGC 1 cut(s) 796
Tsp45I GTSAC 2 cut(s) 96, 836
TspDTI ATGAA 6 cut(s) 20, 103, 204, 350, 365, 828
Tth111I GACNNNGTC 1 cut(s) 842
XagI CCTNNNNNAGG 2 cut(s) 519, 530
XapI RAATTY 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 678
XhoI CTCGAG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 689, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.