Rw4G004290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000213
Physical Location & Seq
Forward (+)
8569523 .. 8570743
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004290.1

Sequence Viewer

Length: 861 bp
ATGTCCTCCCAAAAACCGCTTGACCTACCCACCAGCGACGGCGAAGAGGAGAGGCAGCAACACCCGCTCCGGAAGACCAAAGAGAAGTTGATGTGGGACTTGGAGCTGGAGGAGGGTGACAAGTCATTCTACATGTGTTGTCTAGAGCACAGGAGCGACTGGGTGGCTTATGTTGTCCACGCCATCAAACTGTCGGATTTGTTATCATATTCGGCGGTGGGGGACCAGCCACCGCGATTACGGCAAGTGGCTTATAAGGCCGGGTCGCATCTCCCCGGCTCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGTGTGACACCCAGCTCCCCTTTCGGCTTCAGGACAATAGTCCCTACTATGTTCCGGGGTGGCCCTTTTCCCTTCAATAACAAGGCTTTAGTCCTGGACCTGCAGGAGGACGACAAGAAGAAAATAATGTTTGGCTACAGTTATGAGCCTTGGCGTCTAAGGGTATATCTTATGTCATTGTCTGAAAACAAAGAAATTATTACAAAAATCGGTCATCTGAGGATGCCAGTGTTACCTGCTGAATTGGGTTTGCCACAACGCTGTGAATTTTTGCACATAGGAGGTCAGAAAGCCTGCCTTGTTGTCACCGAATTCGACTTCCGTGGTGAAGTCGACGCTCCTGCTTATAATGAGCGCAATACTCATAAGAGACACGGTGCGGTCATACCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAACACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCAGTTTTCCTGAACCTGAAACGGTTGGCTGCTTTCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.55

Weight (kDa)

6.51

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 255, 672
Acc36I ACCTGC 2 cut(s) 432, 568
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 7 cut(s) 17, 65, 215, 233, 291, 324, 704
AclWI GGATC 2 cut(s) 297, 310
AcsI RAATTY 2 cut(s) 590, 635
AcuI CTGAAG 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 400, 719, 725
AjnI CCWGG 1 cut(s) 417
AleI CACNNNNGTG 1 cut(s) 740
AluBI AGCT 3 cut(s) 106, 339, 795
AluI AGCT 3 cut(s) 106, 339, 795
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 688
AlwI GGATC 2 cut(s) 297, 310
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 2 cut(s) 258, 385
ApeKI GCWGC 3 cut(s) 55, 792, 846
ApoI RAATTY 2 cut(s) 590, 635
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 3 cut(s) 223, 386, 421
AsuC2I CCSGG 3 cut(s) 262, 276, 380
AsuHPI GGTGA 5 cut(s) 128, 310, 622, 662, 727
AsuII TTCGAA 1 cut(s) 798
AvaII GGWCC 2 cut(s) 223, 421
BamHI GGATCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 67, 804, 833
BccI CCATC 2 cut(s) 191, 823
BceAI ACGGC 2 cut(s) 55, 257
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 419
BcnI CCSGG 3 cut(s) 262, 276, 380
BcoDI GTCTC 1 cut(s) 688
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 2 cut(s) 425, 460
BfuAI ACCTGC 2 cut(s) 432, 568
BisI GCNGC 3 cut(s) 56, 793, 847
BlsI GCNGC 3 cut(s) 57, 794, 848
Bme1390I CCNGG 4 cut(s) 262, 276, 380, 419
Bme18I GGWCC 2 cut(s) 223, 421
BmgT120I GGNCC 3 cut(s) 223, 386, 421
BmiI GGNNCC 2 cut(s) 224, 304
BmrFI CCNGG 4 cut(s) 262, 276, 380, 419
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 277, 537
BmuI ACTGGG 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 798
BpuMI CCSGG 3 cut(s) 262, 276, 380
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 5 cut(s) 274, 379, 473, 646, 738
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 164, 551, 819
BseAI TCCGGA 1 cut(s) 69
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 5 cut(s) 274, 379, 473, 646, 738
BseGI GGATG 2 cut(s) 552, 815
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 3 cut(s) 164, 551, 819
BseRI GAGGAG 2 cut(s) 62, 125
BseXI GCAGC 3 cut(s) 67, 804, 833
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 260, 387
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 5 cut(s) 70, 261, 276, 321, 379
BslFI GGGAC 3 cut(s) 110, 236, 350
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 688
BsmFI GGGAC 3 cut(s) 110, 236, 350
BsnI GGCC 2 cut(s) 260, 387
Bsp119I TTCGAA 1 cut(s) 798
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 7 cut(s) 17, 65, 215, 233, 291, 324, 704
BspANI GGCC 2 cut(s) 260, 387
BspCNI CTCAG 1 cut(s) 534
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 224, 304
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 2 cut(s) 432, 568
BspPI GGATC 2 cut(s) 297, 310
BspT104I TTCGAA 1 cut(s) 798
BsrBI CCGCTC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 3 cut(s) 164, 551, 819
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 5 cut(s) 274, 379, 473, 646, 738
BssMI GATC 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 473, 738
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 4 cut(s) 192, 464, 701, 841
Bst6I CTCTTC 2 cut(s) 39, 792
BstACI GRCGYC 1 cut(s) 478
BstBI TTCGAA 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 482, 542
BstDSI CCRYGG 1 cut(s) 646
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 552, 815
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 688
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 3 cut(s) 64, 241, 257
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 136
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 260, 274, 378, 417
BstSFI CTRYAG 2 cut(s) 425, 460
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 67, 804, 833
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 2 cut(s) 260, 387
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 552, 815
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 2 cut(s) 432, 568
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 1 cut(s) 681
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 223, 386, 421
CseI GACGC 2 cut(s) 467, 668
CviAII CATG 2 cut(s) 133, 781
DdeI CTNAG 2 cut(s) 482, 542
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 39, 792
EarI CTCTTC 2 cut(s) 39, 792
Eco130I CCWWGG 2 cut(s) 473, 738
Eco32I GATATC 1 cut(s) 733
Eco47I GGWCC 2 cut(s) 223, 421
Eco57I CTGAAG 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 473, 738
ErhI CCWWGG 2 cut(s) 473, 738
FaeI CATG 2 cut(s) 136, 784
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 3 cut(s) 110, 236, 350
FatI CATG 2 cut(s) 132, 780
FauI CCCGC 1 cut(s) 72
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 56, 793, 847
FokI GGATG 2 cut(s) 559, 802
Fsp4HI GCNGC 3 cut(s) 56, 793, 847
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 680
GluI GCNGC 3 cut(s) 56, 793, 847
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 260, 387
HapII CCGG 5 cut(s) 70, 261, 276, 321, 379
HgaI GACGC 2 cut(s) 467, 668
HhaI GCGC 1 cut(s) 681
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 2 cut(s) 136, 784
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HpaII CCGG 5 cut(s) 70, 261, 276, 321, 379
HphI GGTGA 5 cut(s) 128, 310, 622, 662, 727
Hpy166II GTNNAC 3 cut(s) 178, 658, 745
Hpy188I TCNGA 4 cut(s) 196, 508, 543, 612
Hpy188III TCNNGA 4 cut(s) 70, 143, 355, 827
Hpy8I GTNNAC 3 cut(s) 178, 658, 745
Hpy99I CGWCG 2 cut(s) 41, 662
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 4 cut(s) 192, 464, 701, 841
HpyCH4V TGCA 2 cut(s) 427, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 241, 257
HpyF3I CTNAG 2 cut(s) 482, 542
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 2 cut(s) 136, 784
HspAI GCGC 1 cut(s) 679
Kpn2I TCCGGA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 5 cut(s) 72, 103, 153, 344, 667
Lsp1109I GCAGC 3 cut(s) 67, 804, 833
LweI GCATC 2 cut(s) 277, 537
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 4 cut(s) 116, 328, 555, 628
MalI GATC 1 cut(s) 304
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 302
MboII GAAGA 4 cut(s) 56, 85, 454, 779
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 8 cut(s) 309, 519, 566, 590, 635, 719, 760, 776
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 16, 40, 45, 103, 106, 424, 537, 599, 795
MroI TCCGGA 1 cut(s) 69
MseI TTAA 1 cut(s) 767
MslI CAYNNNNRTG 1 cut(s) 740
MspI CCGG 5 cut(s) 70, 261, 276, 321, 379
MspR9I CCNGG 4 cut(s) 262, 276, 380, 419
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 64, 241, 257
NciI CCSGG 3 cut(s) 262, 276, 380
NdeII GATC 1 cut(s) 302
NlaIII CATG 2 cut(s) 136, 784
NlaIV GGNNCC 2 cut(s) 224, 304
NmuCI GTSAC 3 cut(s) 116, 328, 628
NspI RCATGY 1 cut(s) 136
NspV TTCGAA 1 cut(s) 798
OliI CACNNNNGTG 1 cut(s) 740
PciI ACATGT 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 3 cut(s) 57, 794, 848
PscI ACATGT 1 cut(s) 132
PshAI GACNNNNGTC 1 cut(s) 362
PsiI TTATAA 2 cut(s) 255, 672
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 224, 304
PspPI GGNCC 3 cut(s) 223, 386, 421
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 740
SalI GTCGAC 1 cut(s) 656
SaqAI TTAA 1 cut(s) 767
SatI GCNGC 3 cut(s) 56, 793, 847
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 3 cut(s) 223, 386, 421
SbfI CCTGCAGG 1 cut(s) 429
ScrFI CCNGG 4 cut(s) 262, 276, 380, 419
SdaI CCTGCAGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 27, 108, 341, 426, 562, 610, 744, 797, 835
SfaNI GCATC 2 cut(s) 277, 537
SfcI CTRYAG 2 cut(s) 425, 460
SfuI TTCGAA 1 cut(s) 798
SgrAI CRCCGGYG 1 cut(s) 320
SinI GGWCC 2 cut(s) 223, 421
SmiMI CAYNNNNRTG 1 cut(s) 740
Sse8387I CCTGCAGG 1 cut(s) 429
Sse9I AATT 8 cut(s) 309, 519, 566, 590, 635, 719, 760, 776
SsiI CCGC 7 cut(s) 17, 65, 215, 233, 291, 324, 704
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 4 cut(s) 260, 274, 378, 417
StyI CCWWGG 2 cut(s) 473, 738
TaaI ACNGT 4 cut(s) 192, 464, 701, 841
TaqI TCGA 3 cut(s) 639, 657, 798
TaqII GACCGA 1 cut(s) 524
TasI AATT 8 cut(s) 309, 519, 566, 590, 635, 719, 760, 776
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 3 cut(s) 116, 328, 628
TseI GCWGC 3 cut(s) 55, 792, 846
Tsp45I GTSAC 3 cut(s) 116, 328, 628
TspDTI ATGAA 1 cut(s) 769
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 2 cut(s) 223, 421
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 590, 635
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.