Rh1DG251300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000213
Physical Location & Seq
Forward (+)
46475122 .. 46475982
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG251300.1

Sequence Viewer

Length: 861 bp
ATGACCAAAAAATCACGATCTGGCAAAGAAGAGGAAAGGCATCCACATAAGCTTCAGACGATCCGGCGCTGTGAAAAAGACTTGAAAGTGAAAACAAGCAGTGGAAAGGTGAAGAAGAATCAGAGCACTCTTGTTCGGTGCGGTAGGAGCTTGAACGCGGAGGAGGTTTATCGTAAGTCCCTCTACTGTTGTAGCTTTGAAGTTAACCAGTCCATTCATAAGCCCAAGGAGAAATGGGATGCTTTTGTTGTCCGCGCCATCAATCTTGGCGATTTCTTCTCATTGTCATCATCCAAAATGAAATTAGAATTACAACAAGTAACTTATAGGGGTGGAAATGACCTCCCCGTTTTTGGGGGTTGCGGTGTGTTGGGCTCCCAGATTGTTTTCGTTAGCGGCCTGACACAAAATCATTCTGGGCGCTCTTTGAGTGGATGTTGCTCCAGTCGAGAAGTTTATGTGTTTGATACCAAGCATCCCGAGAAGGGGATCGTGAAAATGGATGGGACTCTAAACCTAGGGAAGTACCGACCGTTGACGGTGCAGGTGGCCGACAAACTCTACTCCCTGTGCAATTATGAGTTTTCTTACTGTCCTCCTGATTCATTTGAGGTATTTGACCCCAAAGAGCGGACTTGGTCCTTACTGCCTGATTTTCCATCCAACTATGGTCACTTCATGTCTTATGCAATTGTGGGCACCAAGTTTTTCGTCTCTAATGCCAAGGTGCCGGTGTGCTGCTTTGACATGGCTGACGAGTCAAACAAACAACAATGGAGAAGAGTCCCTAGTATGTGCGGAGGCGGCCCTTTTCCCTTTTGGGGACAAGCTTTTAGTCCTAGACCTACCGGAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.26

Weight (kDa)

9.25

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 2 cut(s) 698, 727
AccBSI CCGCTC 1 cut(s) 631
AccII CGCG 2 cut(s) 158, 255
AciI CCGC 8 cut(s) 141, 158, 253, 363, 396, 631, 798, 804
AclWI GGATC 2 cut(s) 55, 497
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 6 cut(s) 353, 354, 485, 486, 630, 821
AgsI TTSAA 3 cut(s) 85, 154, 200
AluBI AGCT 4 cut(s) 52, 150, 195, 830
AluI AGCT 4 cut(s) 52, 150, 195, 830
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 2 cut(s) 55, 497
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 3 cut(s) 397, 549, 805
ApeKI GCWGC 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 517
AspLEI GCGC 3 cut(s) 69, 257, 423
AspS9I GGNCC 2 cut(s) 639, 806
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 639
AvrII CCTAGG 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 701
BanI GGYRCC 2 cut(s) 698, 727
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 725
BccI CCATC 3 cut(s) 266, 497, 667
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 3 cut(s) 518, 789, 840
BfoI RGCGCY 2 cut(s) 70, 424
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 3 cut(s) 397, 739, 805
BlnI CCTAGG 1 cut(s) 517
BlsI GCNGC 3 cut(s) 398, 740, 806
Bme18I GGWCC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 639, 806
BmiI GGNNCC 3 cut(s) 376, 700, 729
BmsI GCATC 3 cut(s) 49, 229, 484
BpmI CTGGAG 1 cut(s) 427
BsaJI CCNNGG 3 cut(s) 225, 517, 723
BsaWI WCCGGW 1 cut(s) 848
Bsc4I CCNNNNNNNGG 6 cut(s) 353, 354, 485, 486, 630, 821
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 208, 444
BseDI CCNNGG 3 cut(s) 225, 517, 723
BseGI GGATG 7 cut(s) 40, 244, 290, 440, 475, 508, 659
BseLI CCNNNNNNNGG 6 cut(s) 353, 354, 485, 486, 630, 821
BseNI ACTGG 2 cut(s) 208, 444
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 1 cut(s) 725
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 2 cut(s) 158, 255
Bsh1285I CGRYCG 1 cut(s) 533
BshFI GGCC 3 cut(s) 399, 551, 807
BshNI GGYRCC 2 cut(s) 698, 727
BsiEI CGRYCG 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 3 cut(s) 64, 731, 849
BslFI GGGAC 4 cut(s) 163, 520, 770, 837
BslI CCNNNNNNNGG 6 cut(s) 353, 354, 485, 486, 630, 821
BsmAI GTCTC 1 cut(s) 718
BsmBI CGTCTC 1 cut(s) 718
BsmFI GGGAC 4 cut(s) 163, 520, 770, 837
BsnI GGCC 3 cut(s) 399, 551, 807
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 128, 377, 701
Bsp143I GATC 3 cut(s) 17, 60, 489
BspACI CCGC 8 cut(s) 141, 158, 253, 363, 396, 631, 798, 804
BspANI GGCC 3 cut(s) 399, 551, 807
BspFNI CGCG 2 cut(s) 158, 255
BspLI GGNNCC 3 cut(s) 376, 700, 729
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 2 cut(s) 55, 497
BspT107I GGYRCC 2 cut(s) 698, 727
BsrBI CCGCTC 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 2 cut(s) 208, 444
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 225, 517, 723
BssMI GATC 3 cut(s) 17, 60, 489
BssT1I CCWWGG 3 cut(s) 225, 517, 723
Bst4CI ACNGT 4 cut(s) 188, 534, 541, 593
Bst6I CTCTTC 2 cut(s) 24, 775
BstF5I GGATG 7 cut(s) 40, 244, 290, 440, 475, 508, 659
BstFNI CGCG 2 cut(s) 158, 255
BstH2I RGCGCY 2 cut(s) 70, 424
BstHHI GCGC 3 cut(s) 69, 257, 423
BstKTI GATC 3 cut(s) 20, 63, 492
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 3 cut(s) 17, 60, 489
BstMCI CGRYCG 1 cut(s) 533
BstMWI GCNNNNNNNGC 2 cut(s) 147, 804
BstSLI GKGCMC 1 cut(s) 701
BstUI CGCG 2 cut(s) 158, 255
BstV1I GCAGC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 399, 551, 807
BtsCI GGATG 7 cut(s) 40, 244, 290, 440, 475, 508, 659
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 535
CfoI GCGC 3 cut(s) 69, 257, 423
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 639, 806
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 679, 748
CviQI GTAC 1 cut(s) 526
DpnI GATC 3 cut(s) 19, 62, 491
DpnII GATC 3 cut(s) 17, 60, 489
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 24, 775
EarI CTCTTC 2 cut(s) 24, 775
Eco130I CCWWGG 3 cut(s) 225, 517, 723
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 639
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 479
EcoT14I CCWWGG 3 cut(s) 225, 517, 723
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 3 cut(s) 225, 517, 723
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 2 cut(s) 682, 751
FaqI GGGAC 4 cut(s) 163, 520, 770, 837
FatI CATG 2 cut(s) 678, 747
Fnu4HI GCNGC 3 cut(s) 397, 739, 805
FokI GGATG 7 cut(s) 27, 251, 277, 447, 462, 515, 646
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 3 cut(s) 397, 739, 805
FspBI CTAG 3 cut(s) 518, 789, 840
GlaI GCGC 3 cut(s) 68, 256, 422
GluI GCNGC 3 cut(s) 397, 739, 805
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 2 cut(s) 70, 424
HaeIII GGCC 3 cut(s) 399, 551, 807
HapII CCGG 3 cut(s) 64, 731, 849
HhaI GCGC 3 cut(s) 69, 257, 423
Hin1II CATG 2 cut(s) 682, 751
Hin6I GCGC 3 cut(s) 67, 255, 421
HinP1I GCGC 3 cut(s) 67, 255, 421
HincII GTYRAC 2 cut(s) 205, 537
HindII GTYRAC 2 cut(s) 205, 537
HindIII AAGCTT 2 cut(s) 50, 828
HinfI GANTC 5 cut(s) 118, 508, 602, 758, 783
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 3 cut(s) 64, 731, 849
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 205, 537
Hpy188I TCNGA 2 cut(s) 57, 123
Hpy188III TCNNGA 5 cut(s) 15, 449, 479, 493, 599
Hpy8I GTNNAC 2 cut(s) 205, 537
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 4 cut(s) 188, 534, 541, 593
HpyCH4V TGCA 3 cut(s) 544, 573, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 804
Hsp92II CATG 2 cut(s) 682, 751
HspAI GCGC 3 cut(s) 67, 255, 421
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 17, 60, 489
LmnI GCTCC 3 cut(s) 147, 380, 446
Lsp1109I GCAGC 1 cut(s) 725
LweI GCATC 3 cut(s) 49, 229, 484
MaeI CTAG 3 cut(s) 518, 789, 840
MaeIII GTNAC 2 cut(s) 319, 671
MalI GATC 3 cut(s) 19, 62, 491
MbiI CCGCTC 1 cut(s) 631
MboI GATC 3 cut(s) 17, 60, 489
MboII GAAGA 5 cut(s) 41, 124, 127, 268, 792
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 3 cut(s) 128, 377, 701
MluCI AATT 4 cut(s) 302, 308, 574, 690
MlyI GAGTC 3 cut(s) 502, 767, 792
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 8 cut(s) 25, 154, 157, 191, 353, 604, 606, 794
MseI TTAA 1 cut(s) 204
MspI CCGG 3 cut(s) 64, 731, 849
MunI CAATTG 1 cut(s) 690
MvnI CGCG 2 cut(s) 158, 255
MwoI GCNNNNNNNGC 2 cut(s) 147, 804
NdeII GATC 3 cut(s) 17, 60, 489
NlaIII CATG 2 cut(s) 682, 751
NlaIV GGNNCC 3 cut(s) 376, 700, 729
NmuCI GTSAC 1 cut(s) 671
PaqCI CACCTGC 1 cut(s) 535
PfeI GAWTC 2 cut(s) 118, 602
PflFI GACNNNGTC 1 cut(s) 637
PkrI GCNGC 3 cut(s) 398, 740, 806
PleI GAGTC 3 cut(s) 502, 766, 791
PpsI GAGTC 3 cut(s) 502, 766, 791
PspN4I GGNNCC 3 cut(s) 376, 700, 729
PspPI GGNCC 2 cut(s) 639, 806
PsyI GACNNNGTC 1 cut(s) 637
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 397, 739, 805
Sau3AI GATC 3 cut(s) 17, 60, 489
Sau96I GGNCC 2 cut(s) 639, 806
SchI GAGTC 3 cut(s) 502, 767, 792
SduI GDGCHC 3 cut(s) 128, 377, 701
SfaNI GCATC 3 cut(s) 49, 229, 484
SinI GGWCC 1 cut(s) 639
Sse9I AATT 4 cut(s) 302, 308, 574, 690
SsiI CCGC 8 cut(s) 141, 158, 253, 363, 396, 631, 798, 804
SspMI CTAG 3 cut(s) 518, 789, 840
StyI CCWWGG 3 cut(s) 225, 517, 723
TaaI ACNGT 4 cut(s) 188, 534, 541, 593
TaqI TCGA 1 cut(s) 448
TasI AATT 4 cut(s) 302, 308, 574, 690
TauI GCSGC 2 cut(s) 399, 807
TfiI GAWTC 2 cut(s) 118, 602
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 4 cut(s) 206, 314, 594, 667
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 639
XmaJI CCTAGG 1 cut(s) 517
XspI CTAG 3 cut(s) 518, 789, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.