Rmu_sc0000259.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000259.1
OG0000213
Physical Location & Seq
Forward (+)
77242 .. 77721
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000259.1_g000017.1.cds

Sequence Viewer

Length: 480 bp
atgcgcggcccttttccttttggaaacaaagctttggttctagacctgccggctgatgacaagaagaagataatgtttgcctatactatgggtcgttggtatctacgagtttatcttatgtccttggaagaaaatcaagaatctatcacaccgattggtgattttaagctgccaaggttgcctcaggaatatgaatttgcaaaaagatgttattttgttcatataggaggtcagaaagcctgtattattgcccccgaattggttatgacttataaacaaggacctgatattaacgaggctgggactcataggacacggggtgttgccatgccatttcaatttgaagttgatatcaccaaggtcgacaaggacgagaagaattgtttgaccctccaattcatgcctactcgtatcttcaaattctataccaacccatccacttttcctgatcctgaagcatatggttgctttgtgctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.4

Weight (kDa)

7.62

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 6
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 194, 419
AcuI CTGAAG 1 cut(s) 474
AdeI CACNNNGTG 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 3 cut(s) 338, 344, 418
AluBI AGCT 2 cut(s) 32, 169
AluI AGCT 2 cut(s) 32, 169
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 194, 419
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 8, 281
AsuHPI GGTGA 2 cut(s) 170, 346
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 183
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 442
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 7, 170
BlsI GCNGC 2 cut(s) 8, 171
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 8, 281
BsaJI CCNNGG 3 cut(s) 123, 173, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 49
Bse21I CCTNAGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 123, 173, 357
BseGI GGATG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 123, 173, 357
BssMI GATC 1 cut(s) 448
BssT1I CCWWGG 3 cut(s) 123, 173, 357
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 434
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 8, 281
CviAII CATG 2 cut(s) 328, 400
CviJI RGCY 6 cut(s) 9, 32, 53, 169, 239, 299
CviKI_1 RGCY 6 cut(s) 9, 32, 53, 169, 239, 299
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DraIII CACNNNGTG 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 123, 173, 357
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 474
Eco81I CCTNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 281
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 3 cut(s) 123, 173, 357
ErhI CCWWGG 3 cut(s) 123, 173, 357
FaeI CATG 2 cut(s) 331, 403
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 327, 399
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 7, 170
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 2 cut(s) 7, 170
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 7, 170
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 331, 403
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 140, 304
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 170, 346
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 5 cut(s) 41, 137, 185, 446, 452
Hpy8I GTNNAC 1 cut(s) 364
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 331, 403
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 59, 63, 170, 253, 285, 297, 459, 465
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 41
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 5 cut(s) 76, 79, 140, 388, 406
MluCI AATT 6 cut(s) 194, 257, 338, 379, 395, 419
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 4 cut(s) 192, 221, 289, 401
MroNI GCCGGC 1 cut(s) 49
MseI TTAA 2 cut(s) 165, 291
MspI CCGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 178
NaeI GCCGGC 1 cut(s) 51
NdeI CATATG 1 cut(s) 460
NdeII GATC 1 cut(s) 448
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 331, 403
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 8, 171
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 281
PsiI TTATAA 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 299
PspPI GGNCC 2 cut(s) 8, 281
PspPPI RGGWCCY 1 cut(s) 281
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 165, 291
SatI GCNGC 2 cut(s) 7, 170
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 8, 281
SchI GAGTC 1 cut(s) 298
SetI ASST 7 cut(s) 34, 48, 171, 179, 232, 286, 363
SinI GGWCC 1 cut(s) 281
Sse9I AATT 6 cut(s) 194, 257, 338, 379, 395, 419
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 3 cut(s) 123, 173, 357
TaqI TCGA 1 cut(s) 363
TasI AATT 6 cut(s) 194, 257, 338, 379, 395, 419
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 165, 291
Tru9I TTAA 2 cut(s) 165, 291
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 207, 209, 388
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 2 cut(s) 194, 419
XbaI TCTAGA 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.