Rroxscaffold_3G00233830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000213
Physical Location & Seq
Forward (+)
20140717 .. 20141208
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233830.1

Sequence Viewer

Length: 492 bp
ATGTGCCAACGCGGCCCTTTTCCTTTTGGAAACAAAGCTTTGGTCCTGGACCTGCCGGCGGGTGCTGATGACAAGAAGAAGATAATGTTTGCCTATACTATGGGTCGTTGGTATCTAAGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACACCGATTGGTGATTTTAAGCTGCCAAGGTTGCCTCAGGAATATGAATTTGCAAAAAGATGTTATTTTGTTCATATAGGAGGTCAGAAAGCCTGCATTATTGCCCCCGAATTGGTTATGCCTTATAAACGAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACGGGGTGTTGCCATGCCATTTCAATTTGAAGTTGATATCACCAAGGTCGGCAAGGACGAGAAGAATTGTTTGACCCTCCGATTCATGCCTACTCGTATCTTCAAATTCTATACCAACCCATCCACTTTTCCTGATCCTGAAGCATATGGTTGCTTTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.75

Weight (kDa)

8.78

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 60
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 12, 59
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 2 cut(s) 206, 431
AcuI CTGAAG 1 cut(s) 486
AdeI CACNNNGTG 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 58, 271
AgsI TTSAA 3 cut(s) 350, 356, 430
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 2 cut(s) 38, 181
AluI AGCT 2 cut(s) 38, 181
AlwI GGATC 1 cut(s) 455
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 206, 431
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspS9I GGNCC 4 cut(s) 14, 43, 49, 293
AsuHPI GGTGA 2 cut(s) 182, 358
AvaII GGWCC 3 cut(s) 43, 49, 293
AxyI CCTNAGG 1 cut(s) 195
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 2 cut(s) 13, 182
BlsI GCNGC 2 cut(s) 14, 183
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 3 cut(s) 43, 49, 293
BmgT120I GGNCC 4 cut(s) 14, 43, 49, 293
BmrFI CCNGG 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 135, 185, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 271
Bse118I RCCGGY 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 135, 185, 369
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 58, 271
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 58, 271
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 2 cut(s) 12, 59
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 135, 185, 369
BssMI GATC 1 cut(s) 460
BssT1I CCWWGG 3 cut(s) 135, 185, 369
Bst2UI CCWGG 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 57, 253
BstDEI CTNAG 2 cut(s) 116, 195
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 12, 190
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 446
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 57, 253
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 14, 43, 49, 293
CviAII CATG 2 cut(s) 340, 412
CviJI RGCY 5 cut(s) 15, 38, 181, 251, 311
CviKI_1 RGCY 5 cut(s) 15, 38, 181, 251, 311
DdeI CTNAG 2 cut(s) 116, 195
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraIII CACNNNGTG 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 135, 185, 369
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 3 cut(s) 43, 49, 293
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 3 cut(s) 135, 185, 369
ErhI CCWWGG 3 cut(s) 135, 185, 369
FaeI CATG 2 cut(s) 343, 415
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 339, 411
FauI CCCGC 1 cut(s) 52
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 13, 182
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 13, 182
GluI GCNGC 2 cut(s) 13, 182
GsaI CCCAGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 343, 415
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 152, 316, 408
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 182, 358
Hpy188I TCNGA 2 cut(s) 246, 407
Hpy188III TCNNGA 4 cut(s) 149, 197, 458, 464
HpyCH4V TGCA 2 cut(s) 212, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 190
HpyF3I CTNAG 2 cut(s) 116, 195
Hsp92II CATG 2 cut(s) 343, 415
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 168
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 5 cut(s) 88, 91, 152, 400, 418
MluCI AATT 5 cut(s) 206, 269, 350, 391, 431
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 204, 233, 284, 301, 413
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 2 cut(s) 177, 303
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 12, 190
NaeI GCCGGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 472
NdeII GATC 1 cut(s) 460
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 343, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 152, 408
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 14, 183
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 293
PsiI TTATAA 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 45
PspPI GGNCC 4 cut(s) 14, 43, 49, 293
PspPPI RGGWCCY 1 cut(s) 293
SaqAI TTAA 2 cut(s) 177, 303
SatI GCNGC 2 cut(s) 13, 182
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 4 cut(s) 14, 43, 49, 293
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 47
SetI ASST 7 cut(s) 40, 54, 183, 191, 244, 298, 375
SinI GGWCC 3 cut(s) 43, 49, 293
Sse9I AATT 5 cut(s) 206, 269, 350, 391, 431
SsiI CCGC 2 cut(s) 12, 59
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 3 cut(s) 135, 185, 369
TasI AATT 5 cut(s) 206, 269, 350, 391, 431
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 152, 408
Tru1I TTAA 2 cut(s) 177, 303
Tru9I TTAA 2 cut(s) 177, 303
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 219, 221, 400
VpaK11BI GGWCC 3 cut(s) 43, 49, 293
XapI RAATTY 2 cut(s) 206, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.