Rroxscaffold_5G00351660

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000213
Physical Location & Seq
Reverse (-)
28151623 .. 28156085
4463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351660.1

Sequence Viewer

Length: 1581 bp
ATGACCGAAAAATCGTTGAACCCAGAAAGCTATGGTGGTGAAGAAGAAGAAGAAGAAAGGCCGCATCGGCATAAGCGTGTGAAGACGGGCACAGGTAGCGTGGTGAAGATGGAGCCTCTGGTTCGGTGCGGTCGAGGGTTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTTGTCAATAAGTCTCTATTCATTTGTAGCTTTGAATCGTATAAGTCCATACACAACATCCGGGATGCTTCTTATGTTGTTCGCGCCATCAATCTTCGCGATCTGCTGACATCGTCGTCGTCTGTGAAACTAGAATTACGGCAACTGGCGTTCATGGCCGACAAAGATCTCCCAGCTAAAGGGGGTTGCGGTGTTTTTGGCTCCAAAATTGTTTTCGCCAGCGGCTTGAAACCCAACTTCGTGAAACCCGACTTCCAATTTGGGTCACCATACGGCCCAGCTTGCAGCACGGAAGTTTATGCCTTTGATATCCATGACCCCAAGCAAGAAATCGTCAAGATAGACGGGGCTTTTGGGACTTTAAACGGAGGGAAACACGACCCTGTGATTGCTGAGTTTGGCGGCAAACTCTACGCTCTGTCCTGTAAGACCTTTGTTAAAGATGGTGTTTCATTTGAAGTATTTGACCCCGAAAAGGGTACTTGGTCGGTTCTGCCAAAGTATCCTTATCTTGCCGGCTGGTTCTCCTATGCAATTGCGGGCACCAAATTGTTTATGTCTTGCCAATACCCCTGGAGTAAAAACCGATCGATTTACTGCTTTGACCTCGCCTCTGCCGACGACCCAAACAAACAAGAATGGAGGAGAGTCCCCAGTATGTGCCAAGGCGGCCCTTTTCCATTTGTAGGCAAAGCTCTAGTGCTGGACCTGCCGCAGCCTGAACACCATAACAAAAAGTTACTGTTGACCTTTTACCGTGGCTCCTTCCGCACTAGGGTAGTAGTTTATCTTATGTCCTTGGATGAAAACCAAGAAGATATCAGCGAAATCCAGGAGTTGAAGTTGCCTGCAGAGCTCCCTCGTCAACCAAATGACTGTCATTTCTTCCATCTAGGGGGAAACAATGTCTGCCTTGTCACCACCGCTTTCAGAAACACAGATGAAGAGGATGAAGCAATTAAGCCTGGGATTCATACCGTCCGTGGTGCTGCCATACCATTTCAATTTGAATTTGATATCTCCAAGGTGGACAAGGACAGGAAGAATTGTTTCACTGTTCGATTCCAGCCTCCTCGCATTTTCAGATTCCACACCGGTCCAGACTGCATCGTACCGCCCCGAACACTTGTTCTTCCAGAATCTATTTCAAGGTCTAACTGGAGCTCGGTATTTGATTTAGTTGCATCTAGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCTAGAAAGATGTTGCCTCCAAGTCTCCGACTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGTGGGTGCAGCTATAGCAGATGGGTCTCTTCTTCTTCAAGGTCTCTTCTTCCCTTCCATGCTTCTTTTATGTTATTGCAGAACAGTTGAGAAGATTCCTAATGAGTAA

Protein Analysis

526

Amino Acids

59.25

Weight (kDa)

6.27

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 177 - 369 6.8e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 888
AccB1I GGYRCC 1 cut(s) 713
AccII CGCG 2 cut(s) 255, 270
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 1181
AfaI GTAC 2 cut(s) 652, 1284
AfiI CCNNNNNNNGG 7 cut(s) 350, 646, 647, 857, 946, 1066, 1440
AflIII ACRYGT 1 cut(s) 1471
AgeI ACCGGT 1 cut(s) 1265
AjnI CCWGG 3 cut(s) 743, 1002, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 8 cut(s) 30, 201, 347, 452, 866, 1027, 1335, 1484
AluI AGCT 8 cut(s) 30, 201, 347, 452, 866, 1027, 1335, 1484
Alw21I GWGCWC 3 cut(s) 1029, 1337, 1367
Alw26I GTCTC 5 cut(s) 189, 1393, 1435, 1503, 1520
AoxI GGCC 4 cut(s) 59, 327, 445, 841
ApeKI GCWGC 4 cut(s) 456, 886, 1160, 1481
ApoI RAATTY 1 cut(s) 1181
ArsI GACNNNNNNTTYG 4 cut(s) 413, 445, 506, 538
AsiGI ACCGGT 1 cut(s) 1265
Asp700I GAANNNNTTC 1 cut(s) 1220
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 4 cut(s) 446, 842, 877, 1268
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 4 cut(s) 50, 115, 429, 1081
AvaII GGWCC 2 cut(s) 877, 1268
BaeGI GKGCMC 2 cut(s) 92, 716
BanI GGYRCC 1 cut(s) 713
BanII GRGCYC 2 cut(s) 1029, 1337
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 3 cut(s) 1029, 1337, 1367
BbvI GCAGC 4 cut(s) 468, 898, 1147, 1493
BccI CCATC 5 cut(s) 103, 266, 608, 1068, 1487
BceAI ACGGC 2 cut(s) 326, 460
BciT130I CCWGG 3 cut(s) 745, 1004, 1137
BciVI GTATCC 1 cut(s) 684
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 5 cut(s) 189, 1393, 1435, 1503, 1520
BfaI CTAG 6 cut(s) 302, 869, 945, 1064, 1359, 1409
BfmI CTRYAG 2 cut(s) 1020, 1485
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 684
BglI GCCNNNNNGGC 2 cut(s) 67, 840
BglII AGATCT 1 cut(s) 337
BisI GCNGC 9 cut(s) 62, 394, 457, 574, 841, 884, 887, 1161, 1482
BlsI GCNGC 9 cut(s) 63, 395, 458, 575, 842, 885, 888, 1162, 1483
Bme1390I CCNGG 4 cut(s) 233, 745, 1004, 1137
Bme18I GGWCC 2 cut(s) 877, 1268
BmgT120I GGNCC 4 cut(s) 446, 842, 877, 1268
BmiI GGNNCC 4 cut(s) 114, 373, 715, 934
BmrFI CCNGG 4 cut(s) 233, 745, 1004, 1137
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 5 cut(s) 73, 226, 1287, 1364, 1466
BmuI ACTGGG 1 cut(s) 819
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 2 cut(s) 766, 1351
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 761
BsaI GGTCTC 2 cut(s) 1503, 1520
BsaJI CCNNGG 7 cut(s) 743, 835, 928, 969, 1136, 1153, 1194
BsaWI WCCGGW 2 cut(s) 1265, 1395
BsaXI ACNNNNNCTCC 6 cut(s) 917, 947, 998, 1028, 1390, 1420
Bsc4I CCNNNNNNNGG 7 cut(s) 350, 646, 647, 857, 946, 1066, 1440
Bse118I RCCGGY 2 cut(s) 686, 1265
Bse1I ACTGG 3 cut(s) 321, 825, 1334
BseBI CCWGG 3 cut(s) 745, 1004, 1137
BseCI ATCGAT 1 cut(s) 761
BseDI CCNNGG 7 cut(s) 743, 835, 928, 969, 1136, 1153, 1194
BseGI GGATG 4 cut(s) 228, 241, 979, 1126
BseLI CCNNNNNNNGG 7 cut(s) 350, 646, 647, 857, 946, 1066, 1440
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 3 cut(s) 321, 825, 1334
BseRI GAGGAG 9 cut(s) 161, 164, 167, 170, 173, 176, 179, 829, 1233
BseSI GKGCMC 2 cut(s) 92, 716
BseXI GCAGC 4 cut(s) 468, 898, 1147, 1493
BseYI CCCAGC 2 cut(s) 343, 448
BsgI GTGCAG 1 cut(s) 1500
Bsh1236I CGCG 2 cut(s) 255, 270
Bsh1285I CGRYCG 2 cut(s) 133, 761
BshFI GGCC 4 cut(s) 61, 329, 447, 843
BshNI GGYRCC 1 cut(s) 713
BshTI ACCGGT 1 cut(s) 1265
BshVI ATCGAT 1 cut(s) 761
BsiEI CGRYCG 2 cut(s) 133, 761
BsiHKAI GWGCWC 3 cut(s) 1029, 1337, 1367
BsiSI CCGG 4 cut(s) 232, 687, 1266, 1396
BslFI GGGAC 3 cut(s) 541, 806, 1482
BslI CCNNNNNNNGG 7 cut(s) 350, 646, 647, 857, 946, 1066, 1440
BsmAI GTCTC 5 cut(s) 189, 1393, 1435, 1503, 1520
BsmFI GGGAC 3 cut(s) 541, 806, 1482
BsnI GGCC 4 cut(s) 61, 329, 447, 843
Bso31I GGTCTC 2 cut(s) 1503, 1520
Bsp1286I GDGCHC 5 cut(s) 92, 716, 1029, 1337, 1367
Bsp143I GATC 3 cut(s) 271, 337, 758
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 4 cut(s) 61, 329, 447, 843
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 1 cut(s) 761
BspFNI CGCG 2 cut(s) 255, 270
BspLI GGNNCC 4 cut(s) 114, 373, 715, 934
BspMAI CTGCAG 1 cut(s) 1024
BspMI ACCTGC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 2 cut(s) 1503, 1520
BsrFI RCCGGY 2 cut(s) 686, 1265
BsrI ACTGG 3 cut(s) 321, 825, 1334
BssAI RCCGGY 2 cut(s) 686, 1265
BssECI CCNNGG 7 cut(s) 743, 835, 928, 969, 1136, 1153, 1194
BssMI GATC 3 cut(s) 271, 337, 758
BssT1I CCWWGG 3 cut(s) 835, 969, 1194
Bst2UI CCWGG 3 cut(s) 745, 1004, 1137
Bst4CI ACNGT 7 cut(s) 915, 929, 1049, 1150, 1228, 1404, 1558
Bst6I CTCTTC 3 cut(s) 1110, 1506, 1523
BstC8I GCNNGC 5 cut(s) 391, 454, 688, 712, 1020
BstDEI CTNAG 1 cut(s) 564
BstDSI CCRYGG 2 cut(s) 928, 1153
BstEII GGTNACC 1 cut(s) 435
BstF5I GGATG 4 cut(s) 228, 241, 979, 1126
BstFNI CGCG 2 cut(s) 255, 270
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 274, 340, 761
BstMAI GTCTC 5 cut(s) 189, 1393, 1435, 1503, 1520
BstMBI GATC 3 cut(s) 271, 337, 758
BstMCI CGRYCG 2 cut(s) 133, 761
BstMWI GCNNNNNNNGC 9 cut(s) 67, 96, 326, 453, 840, 880, 939, 1024, 1487
BstNI CCWGG 3 cut(s) 745, 1004, 1137
BstNSI RCATGY 1 cut(s) 1475
BstPI GGTNACC 1 cut(s) 435
BstSCI CCNGG 4 cut(s) 231, 743, 1002, 1135
BstSFI CTRYAG 2 cut(s) 1020, 1485
BstSLI GKGCMC 2 cut(s) 92, 716
BstUI CGCG 2 cut(s) 255, 270
BstV1I GCAGC 4 cut(s) 468, 898, 1147, 1493
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 761
BsuI GTATCC 1 cut(s) 684
BsuRI GGCC 4 cut(s) 61, 329, 447, 843
BsuTUI ATCGAT 1 cut(s) 761
BtgI CCRYGG 2 cut(s) 928, 1153
BtsCI GGATG 4 cut(s) 228, 241, 979, 1126
BtsIMutI CAGTG 1 cut(s) 1224
BtuMI TCGCGA 1 cut(s) 270
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 5 cut(s) 391, 454, 688, 712, 1020
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 2 cut(s) 686, 1265
Cfr13I GGNCC 4 cut(s) 446, 842, 877, 1268
ClaI ATCGAT 1 cut(s) 761
Csp6I GTAC 2 cut(s) 651, 1283
CspAI ACCGGT 1 cut(s) 1265
CviAII CATG 4 cut(s) 325, 485, 1472, 1531
CviQI GTAC 2 cut(s) 651, 1283
DdeI CTNAG 1 cut(s) 564
DpnI GATC 3 cut(s) 273, 339, 760
DpnII GATC 3 cut(s) 271, 337, 758
DraI TTTAAA 1 cut(s) 534
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 3 cut(s) 1110, 1506, 1523
EarI CTCTTC 3 cut(s) 1110, 1506, 1523
Ecl136II GAGCTC 2 cut(s) 1027, 1335
Eco130I CCWWGG 3 cut(s) 835, 969, 1194
Eco24I GRGCYC 2 cut(s) 1029, 1337
Eco31I GGTCTC 2 cut(s) 1503, 1520
Eco32I GATATC 3 cut(s) 481, 991, 1189
Eco47I GGWCC 2 cut(s) 877, 1268
Eco53kI GAGCTC 2 cut(s) 1027, 1335
Eco91I GGTNACC 1 cut(s) 435
EcoICRI GAGCTC 2 cut(s) 1027, 1335
EcoO65I GGTNACC 1 cut(s) 435
EcoRII CCWGG 3 cut(s) 743, 1002, 1135
EcoRV GATATC 3 cut(s) 481, 991, 1189
EcoT14I CCWWGG 3 cut(s) 835, 969, 1194
EcoT38I GRGCYC 2 cut(s) 1029, 1337
ErhI CCWWGG 3 cut(s) 835, 969, 1194
FaeI CATG 4 cut(s) 328, 488, 1475, 1534
FaqI GGGAC 3 cut(s) 541, 806, 1482
FatI CATG 4 cut(s) 324, 484, 1471, 1530
FauI CCCGC 1 cut(s) 703
Fnu4HI GCNGC 9 cut(s) 62, 394, 457, 574, 841, 884, 887, 1161, 1482
FokI GGATG 4 cut(s) 215, 248, 986, 1133
FriOI GRGCYC 2 cut(s) 1029, 1337
Fsp4HI GCNGC 9 cut(s) 62, 394, 457, 574, 841, 884, 887, 1161, 1482
FspBI CTAG 6 cut(s) 302, 869, 945, 1064, 1359, 1409
GlaI GCGC 1 cut(s) 256
GluI GCNGC 9 cut(s) 62, 394, 457, 574, 841, 884, 887, 1161, 1482
GsaI CCCAGC 2 cut(s) 347, 452
GsuI CTGGAG 2 cut(s) 766, 1351
HaeIII GGCC 4 cut(s) 61, 329, 447, 843
HapII CCGG 4 cut(s) 232, 687, 1266, 1396
HhaI GCGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 328, 488, 1475, 1534
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 2 cut(s) 918, 1037
HindII GTYRAC 2 cut(s) 918, 1037
HinfI GANTC 7 cut(s) 206, 819, 1141, 1233, 1257, 1310, 1567
HpaII CCGG 4 cut(s) 232, 687, 1266, 1396
HphI GGTGA 4 cut(s) 50, 115, 429, 1081
Hpy166II GTNNAC 3 cut(s) 918, 1037, 1201
Hpy188I TCNGA 5 cut(s) 1103, 1256, 1393, 1435, 1462
Hpy188III TCNNGA 6 cut(s) 269, 412, 508, 1271, 1307, 1409
Hpy8I GTNNAC 3 cut(s) 918, 1037, 1201
Hpy99I CGWCG 3 cut(s) 289, 292, 794
HpyAV CCTTC 5 cut(s) 136, 946, 1383, 1459, 1536
HpyCH4III ACNGT 7 cut(s) 915, 929, 1049, 1150, 1228, 1404, 1558
HpyCH4V TGCA 7 cut(s) 456, 704, 1022, 1278, 1355, 1481, 1551
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 96, 326, 453, 840, 880, 939, 1024, 1487
HpyF3I CTNAG 1 cut(s) 564
Hsp92II CATG 4 cut(s) 328, 488, 1475, 1534
HspAI GCGC 1 cut(s) 255
KroI GCCGGC 1 cut(s) 686
KroNI GCCGGC 1 cut(s) 688
Kzo9I GATC 3 cut(s) 271, 337, 758
LmnI GCTCC 5 cut(s) 112, 377, 938, 1032, 1332
Lsp1109I GCAGC 4 cut(s) 468, 898, 1147, 1493
LweI GCATC 5 cut(s) 73, 226, 1287, 1364, 1466
MaeI CTAG 6 cut(s) 302, 869, 945, 1064, 1359, 1409
MaeIII GTNAC 3 cut(s) 435, 909, 1087
MalI GATC 3 cut(s) 273, 339, 760
MboI GATC 3 cut(s) 271, 337, 758
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 5 cut(s) 92, 716, 1029, 1337, 1367
MluCI AATT 9 cut(s) 305, 378, 428, 705, 719, 1128, 1175, 1181, 1216
MlyI GAGTC 1 cut(s) 828
MmeI TCCRAC 1 cut(s) 1458
MroNI GCCGGC 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 1220
MseI TTAA 3 cut(s) 533, 609, 1131
MslI CAYNNNNRTG 3 cut(s) 75, 1360, 1476
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 4 cut(s) 232, 687, 1266, 1396
MspR9I CCNGG 4 cut(s) 233, 745, 1004, 1137
MunI CAATTG 1 cut(s) 705
MvaI CCWGG 3 cut(s) 745, 1004, 1137
MvnI CGCG 2 cut(s) 255, 270
MwoI GCNNNNNNNGC 9 cut(s) 67, 96, 326, 453, 840, 880, 939, 1024, 1487
NaeI GCCGGC 1 cut(s) 688
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 271, 337, 758
NgoMIV GCCGGC 1 cut(s) 686
NlaIII CATG 4 cut(s) 328, 488, 1475, 1534
NlaIV GGNNCC 4 cut(s) 114, 373, 715, 934
NmuCI GTSAC 2 cut(s) 435, 1087
NruI TCGCGA 1 cut(s) 270
NspI RCATGY 1 cut(s) 1475
PciI ACATGT 1 cut(s) 1471
PcsI WCGNNNNNNNCGW 4 cut(s) 73, 130, 417, 786
PdiI GCCGGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 1220
PfeI GAWTC 6 cut(s) 206, 1141, 1233, 1257, 1310, 1567
PflFI GACNNNGTC 3 cut(s) 173, 283, 1404
PfoI TCCNGGA 2 cut(s) 231, 1002
PinAI ACCGGT 1 cut(s) 1265
PkrI GCNGC 9 cut(s) 63, 395, 458, 575, 842, 885, 888, 1162, 1483
Ple19I CGATCG 1 cut(s) 761
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
PscI ACATGT 1 cut(s) 1471
Psp124BI GAGCTC 2 cut(s) 1029, 1337
Psp6I CCWGG 3 cut(s) 743, 1002, 1135
PspEI GGTNACC 1 cut(s) 435
PspFI CCCAGC 2 cut(s) 343, 448
PspGI CCWGG 3 cut(s) 743, 1002, 1135
PspN4I GGNNCC 4 cut(s) 114, 373, 715, 934
PspPI GGNCC 4 cut(s) 446, 842, 877, 1268
PstI CTGCAG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 3 cut(s) 173, 283, 1404
PvuI CGATCG 1 cut(s) 761
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 2 cut(s) 652, 1284
RsaNI GTAC 2 cut(s) 651, 1283
RseI CAYNNNNRTG 3 cut(s) 75, 1360, 1476
SacI GAGCTC 2 cut(s) 1029, 1337
SaqAI TTAA 3 cut(s) 533, 609, 1131
SatI GCNGC 9 cut(s) 62, 394, 457, 574, 841, 884, 887, 1161, 1482
Sau3AI GATC 3 cut(s) 271, 337, 758
Sau96I GGNCC 4 cut(s) 446, 842, 877, 1268
SchI GAGTC 1 cut(s) 828
ScrFI CCNGG 4 cut(s) 233, 745, 1004, 1137
SduI GDGCHC 5 cut(s) 92, 716, 1029, 1337, 1367
SfaNI GCATC 5 cut(s) 73, 226, 1287, 1364, 1466
SfcI CTRYAG 2 cut(s) 1020, 1485
SinI GGWCC 2 cut(s) 877, 1268
SmiMI CAYNNNNRTG 3 cut(s) 75, 1360, 1476
Sse9I AATT 9 cut(s) 305, 378, 428, 705, 719, 1128, 1175, 1181, 1216
SspMI CTAG 6 cut(s) 302, 869, 945, 1064, 1359, 1409
SstI GAGCTC 2 cut(s) 1029, 1337
StyD4I CCNGG 4 cut(s) 231, 743, 1002, 1135
StyI CCWWGG 3 cut(s) 835, 969, 1194
TaaI ACNGT 7 cut(s) 915, 929, 1049, 1150, 1228, 1404, 1558
TaqI TCGA 3 cut(s) 133, 761, 1231
TaqII GACCGA 1 cut(s) 20
TasI AATT 9 cut(s) 305, 378, 428, 705, 719, 1128, 1175, 1181, 1216
TauI GCSGC 5 cut(s) 64, 396, 576, 843, 886
TfiI GAWTC 6 cut(s) 206, 1141, 1233, 1257, 1310, 1567
Tru1I TTAA 3 cut(s) 533, 609, 1131
Tru9I TTAA 3 cut(s) 533, 609, 1131
TscAI CASTG 1 cut(s) 1231
TseFI GTSAC 2 cut(s) 435, 1087
TseI GCWGC 4 cut(s) 456, 886, 1160, 1481
Tsp45I GTSAC 2 cut(s) 435, 1087
TspDTI ATGAA 7 cut(s) 181, 313, 612, 990, 1128, 1133, 1137
TspGWI ACGGA 3 cut(s) 476, 552, 1142
TspRI CASTG 1 cut(s) 1231
Tth111I GACNNNGTC 3 cut(s) 173, 283, 1404
VpaK11BI GGWCC 2 cut(s) 877, 1268
XapI RAATTY 1 cut(s) 1181
XbaI TCTAGA 1 cut(s) 1408
XceI RCATGY 1 cut(s) 1475
XmnI GAANNNNTTC 1 cut(s) 1220
XspI CTAG 6 cut(s) 302, 869, 945, 1064, 1359, 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.