FvH4_1g07301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Forward (+)
3856859 .. 3857716
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07301.t1

Sequence Viewer

Length: 372 bp
ATGATGAAAGTAGAATGCATATTTCTTCCTACTCAAACGAAATATGCATTGGAGGGTCAACTAGATAGGTTGCCTGAGGAATTGGGTCTGCCACAACGCTGTCAATTGTTGCACATTGGAGGTCAGAAAGCCTGTCTTGTTGTCACCGAAATCAGCCCCCCTGATGCAGACGAACCTGATTATGAGCTCGGTACTCATAAGACTCACGGTGTTGTCATACCATTTCAATATGAGCTTGATATGACCAAGGTGGACAAGGACAAGAAGAACTGCTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTTCCCGATCCTGAATCGGTTGGTTGCTTTCTGCTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

4.95

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 332
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 3 cut(s) 187, 235, 303
AluI AGCT 3 cut(s) 187, 235, 303
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 306
AxyI CCTNAGG 1 cut(s) 75
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 331
BfaI CTAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 302
BmsI GCATC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 246
Bse21I CCTNAGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 337
Bsp1720I GCTNAGC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 300, 336
BstBI TTCGAA 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 75, 274
BstF5I GGATG 1 cut(s) 323
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 131, 156, 187, 235, 303
CviKI_1 RGCY 5 cut(s) 131, 156, 187, 235, 303
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 2 cut(s) 75, 274
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 300, 336
EarI CTCTTC 2 cut(s) 300, 336
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 2 cut(s) 20, 49
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 292
FaiI YATR 9 cut(s) 20, 45, 183, 198, 218, 231, 242, 290, 315
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 257, 289
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 292
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 2 cut(s) 202, 344
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 59, 253
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 335, 341
Hpy8I GTNNAC 2 cut(s) 59, 253
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 18, 47, 112, 167
HpyF3I CTNAG 2 cut(s) 75, 274
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 6 cut(s) 87, 145, 174, 189, 350, 354
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 4 cut(s) 17, 277, 287, 323
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 80, 104, 284
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 4 cut(s) 46, 70, 113, 303
Mph1103I ATGCAT 2 cut(s) 20, 49
MunI CAATTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 20
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 20, 49
NspV TTCGAA 1 cut(s) 306
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 364
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SacI GAGCTC 1 cut(s) 189
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 337
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 189
SetI ASST 7 cut(s) 71, 124, 178, 189, 237, 252, 305
SfaNI GCATC 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 306
Sse9I AATT 3 cut(s) 80, 104, 284
SspMI CTAG 1 cut(s) 62
SstI GAGCTC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 80, 104, 284
TfiI GAWTC 1 cut(s) 344
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 20, 277
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 2 cut(s) 20, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.