FvH4_5g33421

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000213
Physical Location & Seq
Reverse (-)
24167466 .. 24168972
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33421.t1

Sequence Viewer

Length: 555 bp
ATGGGAGGTGCAGCCGCTGCGTTCTCCTCCGGCGAACCTTCTTCTGTTTTTTCTTCACCCTCGCCGGCCGAAACCATCGCCAACCACGACACAGATCCTCCTCCGCTGCTCTCCCTCATTTCCAGCCCCAAATTCCGTGACCGCCACACCCTCCGAAACCCTACCCCTCCTCTCTCCGCCTTCTTCTTCCTCTCCACCTCTCCGGATCCCTCTCCTTTCCCCTCCATTCGCTCCCGGAGTTCCGACGAGCCAAGAATCTCCAGAGAAAGGAAGAAGAAGCTTCGCCGGAGAAGAACACAACTTCGCCGGAGGAGAACGAGGACAGATCGTTGTTCTTCACCTCTGAGTTATGTGTTGCATGATTGTCGTCTGAAGTCTCTTGTTTCTGGCATTGGCGGTGAAGCTGATCGGATTGGGGTAGGTTATGGTTCATGCGGTCATGCATGGATGGTGGATTTGTCCCCCGGGATGATGACGACGTGGATGGCAGATTTTAGGATGTTTCACGGTGGTCGAGGAGGCAGCAGGCTCGGTGGTGGCTCTCGGCAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

185

Amino Acids

20.25

Weight (kDa)

11.32

Isoelectric Point (pI)

75.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 6 cut(s) 15, 104, 142, 177, 396, 435
AclI AACGTT 1 cut(s) 550
AclWI GGATC 3 cut(s) 89, 200, 213
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 267
AjiI CACGTC 1 cut(s) 480
AluBI AGCT 2 cut(s) 280, 404
AluI AGCT 2 cut(s) 280, 404
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 3 cut(s) 89, 200, 213
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 11, 17, 106, 522
ApoI RAATTY 1 cut(s) 131
AsuC2I CCSGG 3 cut(s) 235, 465, 466
AsuHPI GGTGA 3 cut(s) 48, 330, 410
AvaI CYCGRG 1 cut(s) 464
BamHI GGATCC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 4, 23, 93, 534
BccI CCATC 3 cut(s) 83, 442, 478
BcgI CGANNNNNNTGC 4 cut(s) 347, 381, 511, 545
BcnI CCSGG 3 cut(s) 235, 465, 466
BcoDI GTCTC 1 cut(s) 381
BisI GCNGC 5 cut(s) 12, 15, 18, 107, 523
BlsI GCNGC 5 cut(s) 13, 16, 19, 108, 524
Bme1390I CCNGG 3 cut(s) 235, 465, 466
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 235, 465, 466
BpmI CTGGAG 1 cut(s) 244
BpuMI CCSGG 3 cut(s) 235, 465, 466
BsaJI CCNNGG 2 cut(s) 463, 464
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 463, 464
BseGI GGATG 4 cut(s) 453, 474, 489, 504
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 5 cut(s) 16, 90, 159, 325, 531
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 4 cut(s) 4, 23, 93, 534
BsgI GTGCAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 7 cut(s) 30, 65, 203, 235, 286, 307, 465
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 4 cut(s) 94, 205, 325, 406
BspACI CCGC 6 cut(s) 15, 104, 142, 177, 396, 435
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 336
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 3 cut(s) 89, 200, 213
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 463, 464
BssMI GATC 4 cut(s) 94, 205, 325, 406
Bst4CI ACNGT 1 cut(s) 509
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 66, 527
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 4 cut(s) 453, 474, 489, 504
BstKTI GATC 4 cut(s) 97, 208, 328, 409
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 4 cut(s) 94, 205, 325, 406
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 233, 463, 464
BstV1I GCAGC 4 cut(s) 4, 23, 93, 534
BstX2I RGATCY 2 cut(s) 94, 205
BstYI RGATCY 2 cut(s) 94, 205
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 4 cut(s) 453, 474, 489, 504
Cac8I GCNNGC 2 cut(s) 66, 527
CaiI CAGNNNCTG 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 64
Cfr9I CCCGGG 1 cut(s) 464
CviAII CATG 4 cut(s) 359, 432, 440, 444
CviJI RGCY 8 cut(s) 14, 68, 126, 250, 280, 404, 529, 540
CviKI_1 RGCY 8 cut(s) 14, 68, 126, 250, 280, 404, 529, 540
DdeI CTNAG 1 cut(s) 344
DpnI GATC 4 cut(s) 96, 207, 327, 408
DpnII GATC 4 cut(s) 94, 205, 325, 406
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
EciI GGCGGA 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 445
FaeI CATG 4 cut(s) 362, 435, 443, 447
FaiI YATR 6 cut(s) 351, 360, 426, 433, 441, 445
FaqI GGGAC 1 cut(s) 445
FatI CATG 4 cut(s) 358, 431, 439, 443
Fnu4HI GCNGC 5 cut(s) 12, 15, 18, 107, 523
FokI GGATG 4 cut(s) 460, 481, 496, 511
Fsp4HI GCNGC 5 cut(s) 12, 15, 18, 107, 523
GluI GCNGC 5 cut(s) 12, 15, 18, 107, 523
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 68
HapII CCGG 7 cut(s) 30, 65, 203, 235, 286, 307, 465
Hin1II CATG 4 cut(s) 362, 435, 443, 447
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 255
HpaII CCGG 7 cut(s) 30, 65, 203, 235, 286, 307, 465
HphI GGTGA 3 cut(s) 48, 330, 410
Hpy188I TCNGA 5 cut(s) 155, 244, 345, 372, 411
Hpy188III TCNNGA 2 cut(s) 203, 261
Hpy99I CGWCG 2 cut(s) 248, 481
HpyAV CCTTC 2 cut(s) 48, 190
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 479, 550
HpyCH4V TGCA 3 cut(s) 11, 358, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 479, 550
Hsp92II CATG 4 cut(s) 362, 435, 443, 447
Kpn2I TCCGGA 1 cut(s) 202
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 94, 205, 325, 406
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 4 cut(s) 4, 23, 93, 534
MaeII ACGT 2 cut(s) 479, 550
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 96, 207, 327, 408
MboI GATC 4 cut(s) 94, 205, 325, 406
MboII GAAGA 8 cut(s) 33, 45, 175, 178, 283, 286, 303, 327
MflI RGATCY 2 cut(s) 94, 205
MluCI AATT 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 445
MroI TCCGGA 1 cut(s) 202
MroNI GCCGGC 1 cut(s) 64
MspA1I CMGCKG 2 cut(s) 17, 106
MspI CCGG 7 cut(s) 30, 65, 203, 235, 286, 307, 465
MspR9I CCNGG 3 cut(s) 235, 465, 466
MwoI GCNNNNNNNGC 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 3 cut(s) 235, 465, 466
NdeII GATC 4 cut(s) 94, 205, 325, 406
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 4 cut(s) 362, 435, 443, 447
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 5 cut(s) 13, 16, 19, 108, 524
Psp1406I AACGTT 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 2 cut(s) 94, 205
SatI GCNGC 5 cut(s) 12, 15, 18, 107, 523
Sau3AI GATC 4 cut(s) 94, 205, 325, 406
ScrFI CCNGG 3 cut(s) 235, 465, 466
SetI ASST 9 cut(s) 10, 40, 200, 282, 343, 406, 424, 482, 553
SmaI CCCGGG 1 cut(s) 466
Sse9I AATT 1 cut(s) 131
SsiI CCGC 6 cut(s) 15, 104, 142, 177, 396, 435
StyD4I CCNGG 3 cut(s) 233, 463, 464
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 482, 553
TaqI TCGA 1 cut(s) 514
TasI AATT 1 cut(s) 131
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 255
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 11, 17, 106, 522
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 125
TspMI CCCGGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.