Rmu_sc0003952.1_g000007

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003952.1
OG0000213
Physical Location & Seq
Forward (+)
21299 .. 28730
7432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003952.1_g000007.1.cds

Sequence Viewer

Length: 3177 bp
atgccagatttaagaagtggagttcggcgatcaaagaggatcaacaatgtccaggaaaatcctgctgttttagttcctgctgcacggactggtgcaggaaaagggttgactggtagaggtaggggtagagggtctagagccatgaatcaaggtaagaattccaagctgtttggtgctggagttggtggccaagggaatgcaggtttggatttaccaaaaagagatttggtggcggttcacgatgaattggtagatcagaaaggtgcacaaaaattgactgctattgaggatgaagggagcagtagtccacttcccgaaagagtacagattggaaactcccccatgtacaagttggatagaaagctgggaaaagggggctttggacaagtttatgtaggaagaagggtgacaggaggatatgggttctctgggcctgaggccttggaggttgctttaaagcttgaaggtcgaaacagtaaagggtgcagtcatggccctccttatgagtggcaagtatacagctcccttaatggatgttacggagttccccacgttcattacaaaggtcaacaaggagaatactatatcctggtcatggatatgctaggccccagtttatgggatgtttggaatcgcaatcagttgctgtctgaagagatggttgcttgtatagcggtggaggcaatctcaattctagagcagcttcatatcaaaggttttgtgcatggagacgttaagccagaaaactttttgcttggtcaacctggaacagccaatgataagaagttatatcttgttgaccttggtttggcttcaagatggaaggaaacatccggacgtcatgtcgattatgatcaaaaacctgatgttttcaggggaactgttcgttatgcaagtgtacatgctcatttaggcaggacagggagccgaagggatgatcttgagtcattagcttatacccttatatttctccttagaggcaaacttccttggcaaggttacaatggggaaaacaaaggatttcttgtttgcaagaagaagatggcaacttctcctgagatgctatgtggctcatgtcctcctccttttcaacagtttcttgagttggtgaccaatatgaaattcgatgaagaaccaaattacttaaaactaatttctctgtttgataacaacattaatgtgaatgctgctcttcgacctataagaactgatggagctgccaaggtgggccaaaaaaggggaaggttgtttcttgaatcagaagatagcgagcaacccaggaaaaaagttagactaggttgcccagccaatcagtggatctcagtctataataccagaccgtcgatgaagcaaaggtatcattacaatgttatggacgtgagagtggaccagcacattgacaaaggaaaggaagatggtttgtatattagctgtgtcgcttcagctgcgaatatgtgggctatagtcatggatgcagggacaggtttcacatcccaagtttatgaattatctcctgttttcttgcacaaggagtggataatggaacagtgggacaagaactactatatcacttcacttgctggcgcaggcaacggcagtgccctggtggtaatgtcccaaggcgtaccttatactcagcagtcgtacaaagtcagtgacgtattccctttcaaatggattaataagaaatggaaagaaggtttctctgttacctccatgactactgcaggtagcagatggggcattgtcatgtccagaaatgcaggttattctaatcaggttgttgagattgatttcctatatccgagcgaaggcatccatagaagatgggagaatggatatcgtattacctcaactgctgcgacagaggatcaagctgcattcatacttagttcacccaagaagaaatcacaagatgtggctcaggaaactctacggacatctgtttttccaactacgcatgtcaaggaaaaatggttgaagaatctatatattgcatccatctgctatgggagaacattgaagaaagagaagaagaagatttttgatcctccagcgagctctcgctctgcggagctccaatatgatcctctctcttactctcagaattttgatcaaggatgttcttgggaccaacctgatgaagatgacctttgttcgcgctcgttctccatgcgttttgcagttccgtccaagatcaagtttgagaggcttaattggcagtttgtcagttctagcattgtgcatgaatcctccggttcgcatctccctggatctgtgggttgcggtgtttggggatcccaaattgttttcaccggcggcgtgacacccagctcccctcacggcttcaggaatataggtcccgactcagtttggcatacaaatgtttatgcctttgaaacacacacaaatgagatcagaaagcttgatgccaatttacaaggagggaaattgtaccctctgacggtggagctgggcggcaaactgtacgctctttcctataggctggtcggcaagtgggaaggtttgccccagcctccatttttccaagttggctctccatattatgaacatggcaacttctcttacgcaatcgccggcaccaagatctttgcctcccatgaagaatgtcctgtgttctgctttgacgtcgtccacccagacagagaatggagactggtctctactatgcgccggggtggctcttttccctttgataacaaagttgcattagtcttggacctgcagggggacgatgacaagaaaataatgtttgcctacagtcatgagccttggcgtctatgggtatatcttatgtcattgtctgaaaaccaagaaactatcacaaaaatcggtgatctgaggatgccagtgttgcctgatgaattgggtttgccacaacgctgtgaatttttgcacattggaggtcagaaagcgtgccttgttgtcaccgaaattggcgtccgtgctgaagacgctcctgcttataatgagctcggtactcataagagacacggtgcagtcattccatttcaatttgaagttgatatcaccaaggtggacaaggacaagaaaaattgtttagcactccaattcatgcctcttcgcagcttcgaataccataccaacccatccactcttcgtgaacctgaaacggttggttgctttctgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0007346 GO:0008150 GO:0008152 GO:0008360 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010564 GO:0010604 GO:0015630 GO:0016055 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019222 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032879 GO:0032886 GO:0033043 GO:0035567 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051493 GO:0051716 GO:0051726 GO:0060069 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0070507 GO:0071704 GO:0080090 GO:0098657 GO:0140096 GO:0198738 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1905114 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

1058

Amino Acids

118.54

Weight (kDa)

8.69

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2988
AatII GACGTC 2 cut(s) 841, 2652
Acc36I ACCTGC 4 cut(s) 191, 1718, 1754, 2751
AccB1I GGYRCC 1 cut(s) 2600
AccB7I CCANNNNNTGG 2 cut(s) 618, 1314
AccI GTMKAC 1 cut(s) 516
AccII CGCG 1 cut(s) 2161
AccIII TCCGGA 1 cut(s) 833
AciI CCGC 6 cut(s) 233, 674, 2072, 2286, 2319, 2478
AclWI GGATC 8 cut(s) 47, 1325, 1878, 2042, 2081, 2281, 2292, 2305
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 4 cut(s) 157, 1121, 2107, 2909
AcuI CTGAAG 4 cut(s) 672, 1425, 2332, 2991
AcyI GRCGYC 4 cut(s) 838, 2649, 2797, 2961
AfaI GTAC 8 cut(s) 324, 347, 900, 1626, 1646, 2456, 2489, 3001
AfiI CCNNNNNNNGG 9 cut(s) 595, 618, 808, 995, 1237, 1314, 1811, 2464, 2749
AhdI GACNNNNNGTC 1 cut(s) 842
AjiI CACGTC 1 cut(s) 1378
AjnI CCWGG 6 cut(s) 51, 588, 763, 1277, 1602, 2269
AjuI GAANNNNNNNTTGG 4 cut(s) 188, 220, 1106, 1138
AleI CACNNNNGTG 1 cut(s) 3056
Alw21I GWGCWC 4 cut(s) 268, 2063, 2079, 2997
Alw26I GTCTC 4 cut(s) 723, 2668, 2686, 3004
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 8 cut(s) 47, 1325, 1878, 2042, 2081, 2281, 2292, 2305
AlwNI CAGNNNCTG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 833
AoxI GGCC 6 cut(s) 187, 431, 438, 493, 607, 1228
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 8 cut(s) 80, 700, 1187, 1217, 1445, 1859, 1877, 3108
ApoI RAATTY 4 cut(s) 157, 1121, 2107, 2909
ArsI GACNNNNNNTTYG 2 cut(s) 2946, 2978
AseI ATTAAT 2 cut(s) 1176, 1680
AspLEI GCGC 3 cut(s) 1586, 2163, 2694
AspS9I GGNCC 8 cut(s) 431, 494, 608, 1228, 1387, 2131, 2360, 2740
AsuC2I CCSGG 1 cut(s) 2696
AsuHPI GGTGA 7 cut(s) 418, 1120, 1887, 2305, 2867, 2941, 3043
AsuII TTCGAA 1 cut(s) 3114
AvaII GGWCC 4 cut(s) 1387, 2131, 2360, 2740
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 268, 1603
BalI TGGCCA 1 cut(s) 189
BamHI GGATCC 1 cut(s) 2297
BanI GGYRCC 1 cut(s) 2600
BanII GRGCYC 3 cut(s) 2063, 2079, 2997
BbsI GAAGAC 1 cut(s) 2979
Bbv12I GWGCWC 4 cut(s) 268, 2063, 2079, 2997
BbvI GCAGC 8 cut(s) 67, 712, 1174, 1204, 1432, 1846, 1864, 3120
BccI CCATC 9 cut(s) 652, 813, 1036, 1205, 1409, 1731, 1821, 2009, 3139
BceAI ACGGC 2 cut(s) 1609, 2359
BciT130I CCWGG 6 cut(s) 53, 590, 765, 1279, 1604, 2271
BclI TGATCA 2 cut(s) 853, 2113
BcnI CCSGG 1 cut(s) 2696
BcoDI GTCTC 4 cut(s) 723, 2668, 2686, 3004
BfaI CTAG 5 cut(s) 135, 605, 695, 1295, 2235
BfmI CTRYAG 5 cut(s) 1461, 1725, 2500, 2744, 2779
BfuAI ACCTGC 4 cut(s) 191, 1718, 1754, 2751
BglI GCCNNNNNGGC 1 cut(s) 2700
BglII AGATCT 1 cut(s) 2607
Bme1390I CCNGG 7 cut(s) 53, 590, 765, 1279, 1604, 2271, 2696
Bme18I GGWCC 4 cut(s) 1387, 2131, 2360, 2740
BmeRI GACNNNNNGTC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 1378
BmgT120I GGNCC 8 cut(s) 431, 494, 608, 1228, 1387, 2131, 2360, 2740
BmiI GGNNCC 6 cut(s) 610, 926, 2132, 2299, 2362, 2602
BmrFI CCNGG 7 cut(s) 53, 590, 765, 1279, 1604, 2271, 2696
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 7 cut(s) 1050, 1462, 1824, 2006, 2272, 2419, 2856
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 2979
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 2 cut(s) 198, 2037
Bpu10I CCTNAGC 1 cut(s) 1923
Bpu14I TTCGAA 1 cut(s) 3114
BpuEI CTTGAG 2 cut(s) 962, 1121
BpuMI CCSGG 1 cut(s) 2696
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 4 cut(s) 838, 2649, 2797, 2961
BsaI GGTCTC 1 cut(s) 2686
BsaWI WCCGGW 2 cut(s) 833, 2255
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 9 cut(s) 595, 618, 808, 995, 1237, 1314, 1811, 2464, 2749
Bse118I RCCGGY 2 cut(s) 2315, 2597
Bse1I ACTGG 5 cut(s) 94, 115, 612, 2682, 2870
Bse21I CCTNAGG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 833
BseBI CCWGG 6 cut(s) 53, 590, 765, 1279, 1604, 2271
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 9 cut(s) 595, 618, 808, 995, 1237, 1314, 1811, 2464, 2749
BseMII CTCAG 8 cut(s) 426, 1047, 1335, 1649, 1937, 2117, 2382, 2852
BseNI ACTGG 5 cut(s) 94, 115, 612, 2682, 2870
BseRI GAGGAG 1 cut(s) 1071
BseSI GKGCMC 2 cut(s) 268, 1603
BseXI GCAGC 8 cut(s) 67, 712, 1174, 1204, 1432, 1846, 1864, 3120
BseYI CCCAGC 5 cut(s) 364, 1303, 2330, 2473, 2532
BsgI GTGCAG 4 cut(s) 66, 114, 505, 3039
Bsh1236I CGCG 1 cut(s) 2161
BshFI GGCC 6 cut(s) 189, 433, 440, 495, 609, 1230
BshNI GGYRCC 1 cut(s) 2600
BsiHKAI GWGCWC 4 cut(s) 268, 2063, 2079, 2997
BsiSI CCGG 5 cut(s) 834, 2256, 2316, 2598, 2695
BslFI GGGAC 6 cut(s) 1492, 1565, 1600, 2144, 2346, 2765
BslI CCNNNNNNNGG 9 cut(s) 595, 618, 808, 995, 1237, 1314, 1811, 2464, 2749
BsmAI GTCTC 4 cut(s) 723, 2668, 2686, 3004
BsmBI CGTCTC 1 cut(s) 723
BsmFI GGGAC 6 cut(s) 1492, 1565, 1600, 2144, 2346, 2765
BsmI GAATGC 3 cut(s) 202, 1189, 1880
BsnI GGCC 6 cut(s) 189, 433, 440, 495, 609, 1230
Bso31I GGTCTC 1 cut(s) 2686
Bsp119I TTCGAA 1 cut(s) 3114
Bsp1286I GDGCHC 5 cut(s) 268, 1603, 2063, 2079, 2997
Bsp13I TCCGGA 1 cut(s) 833
Bsp1407I TGTACA 2 cut(s) 345, 898
BspACI CCGC 6 cut(s) 233, 674, 2072, 2286, 2319, 2478
BspANI GGCC 6 cut(s) 189, 433, 440, 495, 609, 1230
BspCNI CTCAG 8 cut(s) 427, 1048, 1334, 1648, 1936, 2116, 2381, 2853
BspEI TCCGGA 1 cut(s) 833
BspFNI CGCG 1 cut(s) 2161
BspHI TCATGA 1 cut(s) 2785
BspLI GGNNCC 6 cut(s) 610, 926, 2132, 2299, 2362, 2602
BspMAI CTGCAG 2 cut(s) 1729, 2748
BspMI ACCTGC 4 cut(s) 191, 1718, 1754, 2751
BspPI GGATC 8 cut(s) 47, 1325, 1878, 2042, 2081, 2281, 2292, 2305
BspQI GCTCTTC 1 cut(s) 1197
BspT104I TTCGAA 1 cut(s) 3114
BspT107I GGYRCC 1 cut(s) 2600
BspTNI GGTCTC 1 cut(s) 2686
BsrFI RCCGGY 2 cut(s) 2315, 2597
BsrGI TGTACA 2 cut(s) 345, 898
BsrI ACTGG 5 cut(s) 94, 115, 612, 2682, 2870
BssAI RCCGGY 2 cut(s) 2315, 2597
BssNAI GTATAC 1 cut(s) 517
BssNI GRCGYC 4 cut(s) 838, 2649, 2797, 2961
BssT1I CCWWGG 8 cut(s) 190, 441, 802, 989, 1221, 1618, 2792, 3054
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 6 cut(s) 53, 590, 765, 1279, 1604, 2271
Bst6I CTCTTC 4 cut(s) 648, 1197, 3108, 3144
BstACI GRCGYC 4 cut(s) 838, 2649, 2797, 2961
BstAUI TGTACA 2 cut(s) 345, 898
BstBI TTCGAA 1 cut(s) 3114
BstC8I GCNNGC 6 cut(s) 1271, 1582, 1588, 2059, 2599, 2938
BstEII GGTNACC 1 cut(s) 1108
BstENI CCTNNNNNAGG 1 cut(s) 993
BstFNI CGCG 1 cut(s) 2161
BstHHI GCGC 3 cut(s) 1586, 2163, 2694
BstMAI GTCTC 4 cut(s) 723, 2668, 2686, 3004
BstMWI GCNNNNNNNGC 9 cut(s) 492, 671, 680, 1445, 1740, 2218, 2700, 2875, 2975
BstNI CCWGG 6 cut(s) 53, 590, 765, 1279, 1604, 2271
BstNSI RCATGY 2 cut(s) 905, 1964
BstPI GGTNACC 1 cut(s) 1108
BstSCI CCNGG 7 cut(s) 51, 588, 763, 1277, 1602, 2269, 2694
BstSFI CTRYAG 5 cut(s) 1461, 1725, 2500, 2744, 2779
BstSLI GKGCMC 2 cut(s) 268, 1603
BstUI CGCG 1 cut(s) 2161
BstV1I GCAGC 8 cut(s) 67, 712, 1174, 1204, 1432, 1846, 1864, 3120
BstV2I GAAGAC 1 cut(s) 2979
BstX2I RGATCY 4 cut(s) 1317, 2273, 2297, 2607
BstYI RGATCY 4 cut(s) 1317, 2273, 2297, 2607
BstZ17I GTATAC 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 6 cut(s) 189, 433, 440, 495, 609, 1230
BtrI CACGTC 1 cut(s) 1378
BtsI GCAGTG 1 cut(s) 1603
BtsIMutI CAGTG 5 cut(s) 1319, 1553, 1603, 1660, 2877
BveI ACCTGC 4 cut(s) 191, 1718, 1754, 2751
Cac8I GCNNGC 6 cut(s) 1271, 1582, 1588, 2059, 2599, 2938
CaiI CAGNNNCTG 1 cut(s) 646
CciI TCATGA 1 cut(s) 2785
CfoI GCGC 3 cut(s) 1586, 2163, 2694
Cfr10I RCCGGY 2 cut(s) 2315, 2597
Cfr13I GGNCC 8 cut(s) 431, 494, 608, 1228, 1387, 2131, 2360, 2740
CseI GACGC 3 cut(s) 2786, 2950, 2984
Csp6I GTAC 8 cut(s) 323, 346, 899, 1625, 1645, 2455, 2488, 3000
CviQI GTAC 8 cut(s) 323, 346, 899, 1625, 1645, 2455, 2488, 3000
DraI TTTAAA 1 cut(s) 456
DriI GACNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 4 cut(s) 648, 1197, 3108, 3144
Eam1105I GACNNNNNGTC 1 cut(s) 842
EarI CTCTTC 4 cut(s) 648, 1197, 3108, 3144
Ecl136II GAGCTC 3 cut(s) 2061, 2077, 2995
Eco130I CCWWGG 8 cut(s) 190, 441, 802, 989, 1221, 1618, 2792, 3054
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 3 cut(s) 2063, 2079, 2997
Eco31I GGTCTC 1 cut(s) 2686
Eco32I GATATC 2 cut(s) 1841, 3049
Eco47I GGWCC 4 cut(s) 1387, 2131, 2360, 2740
Eco53kI GAGCTC 3 cut(s) 2061, 2077, 2995
Eco57I CTGAAG 4 cut(s) 672, 1425, 2332, 2991
Eco81I CCTNAGG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 1108
EcoICRI GAGCTC 3 cut(s) 2061, 2077, 2995
EcoNI CCTNNNNNAGG 1 cut(s) 993
EcoO109I RGGNCCY 2 cut(s) 608, 2360
EcoO65I GGTNACC 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 6 cut(s) 51, 588, 763, 1277, 1602, 2269
EcoRV GATATC 2 cut(s) 1841, 3049
EcoT14I CCWWGG 8 cut(s) 190, 441, 802, 989, 1221, 1618, 2792, 3054
EcoT38I GRGCYC 3 cut(s) 2063, 2079, 2997
ErhI CCWWGG 8 cut(s) 190, 441, 802, 989, 1221, 1618, 2792, 3054
Esp3I CGTCTC 1 cut(s) 723
FalI AAGNNNNNCTT 6 cut(s) 1008, 1040, 2136, 2168, 2925, 2957
FaqI GGGAC 6 cut(s) 1492, 1565, 1600, 2144, 2346, 2765
FbaI TGATCA 2 cut(s) 853, 2113
FblI GTMKAC 1 cut(s) 516
FriOI GRGCYC 3 cut(s) 2063, 2079, 2997
FspBI CTAG 5 cut(s) 135, 605, 695, 1295, 2235
GlaI GCGC 3 cut(s) 1585, 2162, 2693
GsaI CCCAGC 5 cut(s) 368, 1307, 2334, 2477, 2536
GsuI CTGGAG 2 cut(s) 198, 2037
HaeIII GGCC 6 cut(s) 189, 433, 440, 495, 609, 1230
HapII CCGG 5 cut(s) 834, 2256, 2316, 2598, 2695
HgaI GACGC 3 cut(s) 2786, 2950, 2984
HhaI GCGC 3 cut(s) 1586, 2163, 2694
Hin1I GRCGYC 4 cut(s) 838, 2649, 2797, 2961
Hin6I GCGC 3 cut(s) 1584, 2161, 2692
HinP1I GCGC 3 cut(s) 1584, 2161, 2692
HincII GTYRAC 4 cut(s) 108, 569, 761, 799
HindII GTYRAC 4 cut(s) 108, 569, 761, 799
HindIII AAGCTT 2 cut(s) 458, 2423
HinfI GANTC 7 cut(s) 145, 631, 944, 1256, 1984, 2249, 2366
HpaII CCGG 5 cut(s) 834, 2256, 2316, 2598, 2695
HphI GGTGA 7 cut(s) 418, 1120, 1887, 2305, 2867, 2941, 3043
Hpy99I CGWCG 2 cut(s) 1345, 2654
HpyAV CCTTC 9 cut(s) 287, 396, 458, 817, 924, 1236, 1691, 1805, 2516
HpyCH4IV ACGT 6 cut(s) 552, 732, 838, 1377, 1659, 2649
HpyF10VI GCNNNNNNNGC 9 cut(s) 492, 671, 680, 1445, 1740, 2218, 2700, 2875, 2975
HpySE526I ACGT 6 cut(s) 552, 732, 838, 1377, 1659, 2649
Hsp92I GRCGYC 4 cut(s) 838, 2649, 2797, 2961
HspAI GCGC 3 cut(s) 1584, 2161, 2692
Kpn2I TCCGGA 1 cut(s) 833
KroI GCCGGC 1 cut(s) 2597
KroNI GCCGGC 1 cut(s) 2599
Ksp22I TGATCA 2 cut(s) 853, 2113
LguI GCTCTTC 1 cut(s) 1197
LmnI GCTCC 9 cut(s) 297, 527, 924, 1214, 2074, 2082, 2339, 2470, 2983
Lsp1109I GCAGC 8 cut(s) 67, 712, 1174, 1204, 1432, 1846, 1864, 3120
LweI GCATC 7 cut(s) 1050, 1462, 1824, 2006, 2272, 2419, 2856
MaeI CTAG 5 cut(s) 135, 605, 695, 1295, 2235
MaeII ACGT 6 cut(s) 552, 732, 838, 1377, 1659, 2649
MaeIII GTNAC 8 cut(s) 406, 536, 998, 1108, 1655, 1708, 2323, 2947
MflI RGATCY 4 cut(s) 1317, 2273, 2297, 2607
MhlI GDGCHC 5 cut(s) 268, 1603, 2063, 2079, 2997
MlsI TGGCCA 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 2 cut(s) 953, 2360
MmeI TCCRAC 2 cut(s) 333, 1976
Mox20I TGGCCA 1 cut(s) 189
MroI TCCGGA 1 cut(s) 833
MroNI GCCGGC 1 cut(s) 2597
MscI TGGCCA 1 cut(s) 189
MseI TTAA 8 cut(s) 11, 455, 528, 735, 1145, 1176, 1680, 2214
MslI CAYNNNNRTG 7 cut(s) 599, 1178, 1365, 1748, 2382, 2409, 3056
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 1445
MspI CCGG 5 cut(s) 834, 2256, 2316, 2598, 2695
MspR9I CCNGG 7 cut(s) 53, 590, 765, 1279, 1604, 2271, 2696
Mva1269I GAATGC 3 cut(s) 202, 1189, 1880
MvaI CCWGG 6 cut(s) 53, 590, 765, 1279, 1604, 2271
MvnI CGCG 1 cut(s) 2161
MwoI GCNNNNNNNGC 9 cut(s) 492, 671, 680, 1445, 1740, 2218, 2700, 2875, 2975
NaeI GCCGGC 1 cut(s) 2599
NciI CCSGG 1 cut(s) 2696
NgoMIV GCCGGC 1 cut(s) 2597
NlaIV GGNNCC 6 cut(s) 610, 926, 2132, 2299, 2362, 2602
NmuCI GTSAC 5 cut(s) 406, 1108, 1655, 2323, 2947
NspI RCATGY 2 cut(s) 905, 1964
NspV TTCGAA 1 cut(s) 3114
OliI CACNNNNGTG 1 cut(s) 3056
PagI TCATGA 1 cut(s) 2785
PceI AGGCCT 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 1197
PctI GAATGC 3 cut(s) 202, 1189, 1880
PdiI GCCGGC 1 cut(s) 2599
PfeI GAWTC 5 cut(s) 145, 631, 1256, 1984, 2249
PflFI GACNNNGTC 1 cut(s) 2651
PflMI CCANNNNNTGG 2 cut(s) 618, 1314
PfoI TCCNGGA 1 cut(s) 51
PleI GAGTC 2 cut(s) 952, 2360
PpsI GAGTC 2 cut(s) 952, 2360
PpuMI RGGWCCY 1 cut(s) 2360
PshBI ATTAAT 2 cut(s) 1176, 1680
PsiI TTATAA 1 cut(s) 2988
Psp124BI GAGCTC 3 cut(s) 2063, 2079, 2997
Psp5II RGGWCCY 1 cut(s) 2360
Psp6I CCWGG 6 cut(s) 51, 588, 763, 1277, 1602, 2269
PspEI GGTNACC 1 cut(s) 1108
PspFI CCCAGC 5 cut(s) 364, 1303, 2330, 2473, 2532
PspGI CCWGG 6 cut(s) 51, 588, 763, 1277, 1602, 2269
PspN4I GGNNCC 6 cut(s) 610, 926, 2132, 2299, 2362, 2602
PspPI GGNCC 8 cut(s) 431, 494, 608, 1228, 1387, 2131, 2360, 2740
PspPPI RGGWCCY 1 cut(s) 2360
PstI CTGCAG 2 cut(s) 1729, 2748
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 4 cut(s) 1317, 2273, 2297, 2607
PsyI GACNNNGTC 1 cut(s) 2651
PvuII CAGCTG 1 cut(s) 1445
RsaI GTAC 8 cut(s) 324, 347, 900, 1626, 1646, 2456, 2489, 3001
RsaNI GTAC 8 cut(s) 323, 346, 899, 1625, 1645, 2455, 2488, 3000
RseI CAYNNNNRTG 7 cut(s) 599, 1178, 1365, 1748, 2382, 2409, 3056
SacI GAGCTC 3 cut(s) 2063, 2079, 2997
SapI GCTCTTC 1 cut(s) 1197
SaqAI TTAA 8 cut(s) 11, 455, 528, 735, 1145, 1176, 1680, 2214
Sau96I GGNCC 8 cut(s) 431, 494, 608, 1228, 1387, 2131, 2360, 2740
SbfI CCTGCAGG 1 cut(s) 2748
SchI GAGTC 2 cut(s) 953, 2360
ScrFI CCNGG 7 cut(s) 53, 590, 765, 1279, 1604, 2271, 2696
SdaI CCTGCAGG 1 cut(s) 2748
SduI GDGCHC 5 cut(s) 268, 1603, 2063, 2079, 2997
SfaNI GCATC 7 cut(s) 1050, 1462, 1824, 2006, 2272, 2419, 2856
SfcI CTRYAG 5 cut(s) 1461, 1725, 2500, 2744, 2779
SfuI TTCGAA 1 cut(s) 3114
SgrAI CRCCGGYG 1 cut(s) 2315
SinI GGWCC 4 cut(s) 1387, 2131, 2360, 2740
SmiMI CAYNNNNRTG 7 cut(s) 599, 1178, 1365, 1748, 2382, 2409, 3056
SmlI CTYRAG 2 cut(s) 941, 1100
SmoI CTYRAG 2 cut(s) 941, 1100
Sse8387I CCTGCAGG 1 cut(s) 2748
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 6 cut(s) 233, 674, 2072, 2286, 2319, 2478
SspMI CTAG 5 cut(s) 135, 605, 695, 1295, 2235
SstI GAGCTC 3 cut(s) 2063, 2079, 2997
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 7 cut(s) 51, 588, 763, 1277, 1602, 2269, 2694
StyI CCWWGG 8 cut(s) 190, 441, 802, 989, 1221, 1618, 2792, 3054
TaiI ACGT 6 cut(s) 555, 735, 841, 1380, 1662, 2652
TaqI TCGA 6 cut(s) 469, 846, 1125, 1195, 1343, 3114
TatI WGTACW 3 cut(s) 322, 345, 898
TauI GCSGC 2 cut(s) 2322, 2481
TfiI GAWTC 5 cut(s) 145, 631, 1256, 1984, 2249
Tru1I TTAA 8 cut(s) 11, 455, 528, 735, 1145, 1176, 1680, 2214
Tru9I TTAA 8 cut(s) 11, 455, 528, 735, 1145, 1176, 1680, 2214
TscAI CASTG 5 cut(s) 1319, 1553, 1603, 1660, 2877
TseFI GTSAC 5 cut(s) 406, 1108, 1655, 2323, 2947
TseI GCWGC 8 cut(s) 80, 700, 1187, 1217, 1445, 1859, 1877, 3108
Tsp45I GTSAC 5 cut(s) 406, 1108, 1655, 2323, 2947
TspGWI ACGGA 5 cut(s) 100, 555, 1951, 2178, 2954
TspRI CASTG 5 cut(s) 1319, 1553, 1603, 1660, 2877
Tth111I GACNNNGTC 1 cut(s) 2651
Van91I CCANNNNNTGG 2 cut(s) 618, 1314
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 4 cut(s) 1387, 2131, 2360, 2740
VspI ATTAAT 2 cut(s) 1176, 1680
XagI CCTNNNNNAGG 1 cut(s) 993
XapI RAATTY 4 cut(s) 157, 1121, 2107, 2909
XbaI TCTAGA 2 cut(s) 134, 694
XceI RCATGY 2 cut(s) 905, 1964
XcmI CCANNNNNNNNNTGG 3 cut(s) 349, 1311, 2667
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 5 cut(s) 135, 605, 695, 1295, 2235
ZraI GACGTC 2 cut(s) 839, 2650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.