FvH4_1g04520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Reverse (-)
2396693 .. 2397839
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04520.t1

Sequence Viewer

Length: 1011 bp
ATGATGGACACTTCCTTCAGACAAGGAAAGCATAGGCCCTTGCTGGTGCAGCTCGGCGGAAAGCGTTACGCTCTGTCTGGTAAGCCCATTTTTGAACCCGCACCAGCTAATCCTGCATTTGAGGTATTTGACCCCTGGCTGAAGAATTGGACTCCACTGGCAGAACCTCCGTTTTTAGATTTTGACGGTCCAAGGTTTAAATTTGCTCCATTCTCTTATATTATTAGTGGAAGTAAAATATATGTGTCGAGCAGGGAAGTCAGGTCAACAACAGGGTTTGTCCCGGGGATAGGAATGGTAACGTTAGGGGGATGGATGAGGCATATGGCAAGGATTAGAAATGAGCAACAAGCGAATGAAGAAGATATATTACTAGAGTTAGGGATTCAAGATGAGGAAGAAGTGGATGAAGAAGATATGTTAGAGATTCAAAATGAGGAAGTAGCGGATGAAGAAGGGGATGAAGATGTGGAGGAAGATGCAAATGAAGAAGAGGATGAATTAATAGAGGAAGTAGTTCACCCGGAAGTAGAGCAACTGTGGATCGAAGAAGAAGGTAATTGTGATGTGTATTGCTTCGATGTTGCAAAGGCGGATTTAGGATGGAGGAAGATATCCAATTTTTTTTGGAAAGAAGAAGGGCGGGCTCCCTTTGATACAACTCCATTTCATGGGAGAGTCTTGTTTGTGGACTTTAATCTTGATGGTGACCTGAAGTTAGTTTTTACATATGTATTTGATGGTGAATTTGAAAATCAAAACGAAATATATGTTTTTCTCATGTCTAACTCAGAAGAGAGAGCAATGCTACTTTGTTGTTTGGAGTTTCGCTTGCCCGTTGAATTCAGAGAACCCACAGAGTATAACTTTGTGCAGCTTGGGGATCGTAAAATTGGTCTTATTTTGATTAGATTTTCCCGAAGCAACCAAGACTGGAACGACACAGCTTTTGTAAAATATGCATCGGGGAAGATGAATGTAGTTTTGGTCCCATTGGCTTTTGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.93

Weight (kDa)

4.33

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 671
AciI CCGC 5 cut(s) 57, 99, 446, 593, 643
AclI AACGTT 1 cut(s) 302
AclWI GGATC 2 cut(s) 551, 891
AcsI RAATTY 3 cut(s) 200, 746, 842
AcuI CTGAAG 2 cut(s) 161, 734
AfiI CCNNNNNNNGG 2 cut(s) 290, 671
AgsI TTSAA 5 cut(s) 95, 389, 431, 752, 842
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 4 cut(s) 52, 107, 877, 947
AluI AGCT 4 cut(s) 52, 107, 877, 947
AlwI GGATC 2 cut(s) 551, 891
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 49, 874
ApoI RAATTY 3 cut(s) 200, 746, 842
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
AseI ATTAAT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 516
AspS9I GGNCC 3 cut(s) 36, 188, 988
AsuC2I CCSGG 3 cut(s) 284, 285, 524
AsuHPI GGTGA 3 cut(s) 512, 719, 755
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 188, 988
BanII GRGCYC 1 cut(s) 649
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BbvI GCAGC 2 cut(s) 61, 886
BccI CCATC 4 cut(s) 306, 597, 698, 734
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 3 cut(s) 284, 285, 524
BfaI CTAG 2 cut(s) 374, 1009
BisI GCNGC 2 cut(s) 50, 875
BlsI GCNGC 2 cut(s) 51, 876
Bme1390I CCNGG 4 cut(s) 136, 284, 285, 524
Bme18I GGWCC 2 cut(s) 188, 988
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 36, 188, 988
BmiI GGNNCC 2 cut(s) 648, 990
BmrFI CCNGG 4 cut(s) 136, 284, 285, 524
BmsI GCATC 2 cut(s) 469, 971
BpuMI CCSGG 3 cut(s) 284, 285, 524
BsaJI CCNNGG 4 cut(s) 134, 191, 283, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 671
Bse1I ACTGG 2 cut(s) 162, 938
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 4 cut(s) 134, 191, 283, 284
BseGI GGATG 7 cut(s) 317, 321, 412, 454, 466, 502, 608
BseLI CCNNNNNNNGG 2 cut(s) 290, 671
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 2 cut(s) 162, 938
BseXI GCAGC 2 cut(s) 61, 886
BsgI GTGCAG 2 cut(s) 68, 893
BshFI GGCC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 2 cut(s) 284, 524
BslFI GGGAC 2 cut(s) 266, 974
BslI CCNNNNNNNGG 2 cut(s) 290, 671
BsmFI GGGAC 2 cut(s) 266, 974
BsnI GGCC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 2 cut(s) 543, 883
BspACI CCGC 5 cut(s) 57, 99, 446, 593, 643
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 803
BspLI GGNNCC 2 cut(s) 648, 990
BspPI GGATC 2 cut(s) 551, 891
BsrDI GCAATG 1 cut(s) 810
BsrI ACTGG 2 cut(s) 162, 938
BssECI CCNNGG 4 cut(s) 134, 191, 283, 284
BssMI GATC 2 cut(s) 543, 883
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 188, 540
Bst6I CTCTTC 2 cut(s) 486, 789
BstC8I GCNNGC 2 cut(s) 645, 833
BstDEI CTNAG 1 cut(s) 790
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 7 cut(s) 317, 321, 412, 454, 466, 502, 608
BstKTI GATC 2 cut(s) 546, 886
BstMBI GATC 2 cut(s) 543, 883
BstMWI GCNNNNNNNGC 2 cut(s) 49, 113
BstNI CCWGG 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 4 cut(s) 134, 282, 283, 522
BstV1I GCAGC 2 cut(s) 61, 886
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 7 cut(s) 317, 321, 412, 454, 466, 502, 608
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 645, 833
Cfr13I GGNCC 3 cut(s) 36, 188, 988
Cfr9I CCCGGG 1 cut(s) 283
CviAII CATG 2 cut(s) 671, 781
CviJI RGCY 9 cut(s) 37, 52, 85, 107, 139, 647, 877, 947, 998
CviKI_1 RGCY 9 cut(s) 37, 52, 85, 107, 139, 647, 877, 947, 998
DdeI CTNAG 1 cut(s) 790
DpnI GATC 2 cut(s) 545, 885
DpnII GATC 2 cut(s) 543, 883
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 486, 789
EarI CTCTTC 2 cut(s) 486, 789
EciI GGCGGA 2 cut(s) 72, 608
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 649
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 188, 988
Eco57I CTGAAG 2 cut(s) 161, 734
Eco88I CYCGRG 1 cut(s) 283
Eco91I GGTNACC 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 964
EcoT38I GRGCYC 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 674, 784
FaqI GGGAC 2 cut(s) 266, 974
FatI CATG 2 cut(s) 670, 780
FauI CCCGC 2 cut(s) 106, 636
FauNDI CATATG 2 cut(s) 324, 730
Fnu4HI GCNGC 2 cut(s) 50, 875
FokI GGATG 7 cut(s) 324, 328, 419, 461, 473, 509, 615
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 2 cut(s) 50, 875
FspBI CTAG 2 cut(s) 374, 1009
GluI GCNGC 2 cut(s) 50, 875
HaeIII GGCC 1 cut(s) 37
HapII CCGG 2 cut(s) 284, 524
Hin1II CATG 2 cut(s) 674, 784
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 4 cut(s) 151, 385, 427, 678
HpaII CCGG 2 cut(s) 284, 524
HphI GGTGA 3 cut(s) 512, 719, 755
Hpy166II GTNNAC 3 cut(s) 267, 520, 691
Hpy188I TCNGA 3 cut(s) 20, 793, 848
Hpy188III TCNNGA 3 cut(s) 389, 701, 918
Hpy8I GTNNAC 3 cut(s) 267, 520, 691
HpyAV CCTTC 4 cut(s) 25, 449, 548, 632
HpyCH4III ACNGT 2 cut(s) 188, 540
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 6 cut(s) 49, 116, 482, 587, 874, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 113
HpyF3I CTNAG 1 cut(s) 790
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 674, 784
Kzo9I GATC 2 cut(s) 543, 883
LmnI GCTCC 2 cut(s) 211, 652
Lsp1109I GCAGC 2 cut(s) 61, 886
LweI GCATC 2 cut(s) 469, 971
MaeI CTAG 2 cut(s) 374, 1009
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 65, 298, 707
MalI GATC 2 cut(s) 545, 885
MboI GATC 2 cut(s) 543, 883
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 8 cut(s) 145, 200, 500, 559, 619, 746, 842, 891
MlyI GAGTC 2 cut(s) 145, 687
MnlI CCTC 9 cut(s) 115, 177, 312, 388, 430, 466, 487, 502, 600
Mph1103I ATGCAT 1 cut(s) 964
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 198, 503, 696
MspI CCGG 2 cut(s) 284, 524
MspR9I CCNGG 4 cut(s) 136, 284, 285, 524
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 49, 113
NciI CCSGG 3 cut(s) 284, 285, 524
NdeI CATATG 2 cut(s) 324, 730
NdeII GATC 2 cut(s) 543, 883
NlaIII CATG 2 cut(s) 674, 784
NlaIV GGNNCC 2 cut(s) 648, 990
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 385, 427
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 2 cut(s) 51, 876
PleI GAGTC 2 cut(s) 145, 686
PpsI GAGTC 2 cut(s) 145, 686
PshBI ATTAAT 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 648, 990
PspPI GGNCC 3 cut(s) 36, 188, 988
SaqAI TTAA 3 cut(s) 198, 503, 696
SatI GCNGC 2 cut(s) 50, 875
Sau3AI GATC 2 cut(s) 543, 883
Sau96I GGNCC 3 cut(s) 36, 188, 988
SchI GAGTC 2 cut(s) 145, 687
ScrFI CCNGG 4 cut(s) 136, 284, 285, 524
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 469, 971
SinI GGWCC 2 cut(s) 188, 988
SmaI CCCGGG 1 cut(s) 285
Sse9I AATT 8 cut(s) 145, 200, 500, 559, 619, 746, 842, 891
SsiI CCGC 5 cut(s) 57, 99, 446, 593, 643
SspMI CTAG 2 cut(s) 374, 1009
StyD4I CCNGG 4 cut(s) 134, 282, 283, 522
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 188, 540
TaiI ACGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 248, 546, 579
TasI AATT 8 cut(s) 145, 200, 500, 559, 619, 746, 842, 891
TfiI GAWTC 2 cut(s) 385, 427
Tru1I TTAA 3 cut(s) 198, 503, 696
Tru9I TTAA 3 cut(s) 198, 503, 696
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 2 cut(s) 49, 874
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 8 cut(s) 372, 423, 465, 477, 501, 513, 659, 989
TspGWI ACGGA 1 cut(s) 159
TspMI CCCGGG 1 cut(s) 283
TspRI CASTG 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 188, 988
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 3 cut(s) 200, 746, 842
XmaI CCCGGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 374, 1009
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.