Rmu_sc0005689.1_g000019

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005689.1
OG0000213
Physical Location & Seq
Reverse (-)
64130 .. 65080
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005689.1_g000019.1.cds

Sequence Viewer

Length: 951 bp
atgctattgttgttcgtaccatcaaattatccgacttgttataagatcggggagcgatgctatgaagaattacaattgcggcaagtggcttataagatcggggaagatgttcctgatttggttggttgtgctgttttcggctcccaaatcattttttccggtggcgtgagccccagcttgggttccggtgatagatttccgctaataagttctgaactctggaatagagatgttcatgccttcgaggttcatgacaatattttcaggaagatggatgcgactttacagagagggatattttcccctatgatggaggagctgatcgggaaagtgtacgctctttcctatgagttgatcgctgatcctccatcattcgaggtatttgaccctaaaataggcatgtggaagggtttgccccaacctccatttttccaacccagatctcgatatgactctcatacttccttcttttatgcaattgccggcacaaagatgtttgtgtcccatgacaaatgtccaatgttctgctttgacgttgcacacccaaatagagaatggagactagtccctactatgtgtggcggcggcccttttccttttatgggtaacgcttttgtcctggacctaccggaccaccatgatgacaagaagaagatcatgtttgcttatattcatgatacgtggcggctaggagtttatcttttttccttggaggaaggtcaggaatccatagcaccaattggttatttgaagctgccatggtggccttatgaattgggttcggcagatggctgtgactttgtccacataggaggtcagaaagcctgcattcttatcacccacgagaagaattgtttcacgctccaattcacgactcctcacaccttcgaattccagaccaacccatccacttttcctctaccttttacggttggttgctttctgctgtaa

Protein Analysis

316

Amino Acids

35.98

Weight (kDa)

5.53

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 42, 93
AciI CCGC 5 cut(s) 79, 200, 582, 585, 685
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 1 cut(s) 890
AfaI GTAC 2 cut(s) 18, 335
AfiI CCNNNNNNNGG 5 cut(s) 178, 179, 310, 395, 602
AgsI TTSAA 1 cut(s) 751
AhlI ACTAGT 1 cut(s) 562
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 3 cut(s) 177, 319, 754
AluI AGCT 3 cut(s) 177, 319, 754
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 1 cut(s) 356
AoxI GGCC 2 cut(s) 586, 764
ApeKI GCWGC 1 cut(s) 754
ApoI RAATTY 1 cut(s) 890
Asp700I GAANNNNTTC 2 cut(s) 108, 854
AspS9I GGNCC 3 cut(s) 587, 622, 631
AsuHPI GGTGA 2 cut(s) 200, 829
AsuII TTCGAA 1 cut(s) 888
AvaII GGWCC 2 cut(s) 622, 631
BanII GRGCYC 1 cut(s) 173
BauI CACGAG 1 cut(s) 842
BbvI GCAGC 1 cut(s) 741
BccI CCATC 6 cut(s) 28, 265, 304, 376, 782, 913
BciT130I CCWGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 553
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 2 cut(s) 563, 689
BglI GCCNNNNNGGC 1 cut(s) 763
BglII AGATCT 1 cut(s) 440
BisI GCNGC 5 cut(s) 80, 583, 586, 686, 755
BlsI GCNGC 5 cut(s) 81, 584, 587, 687, 756
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 2 cut(s) 622, 631
BmgT120I GGNCC 3 cut(s) 587, 622, 631
BmiI GGNNCC 2 cut(s) 142, 184
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 2 cut(s) 47, 265
BoxI GACNNNNGTC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 708, 758
BsaWI WCCGGW 3 cut(s) 158, 185, 628
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 179, 310, 395, 602
Bse118I RCCGGY 1 cut(s) 482
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 708, 758
BseGI GGATG 2 cut(s) 280, 905
BseLI CCNNNNNNNGG 5 cut(s) 178, 179, 310, 395, 602
BseRI GAGGAG 2 cut(s) 329, 867
BseXI GCAGC 1 cut(s) 741
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 2 cut(s) 588, 766
BsiSI CCGG 4 cut(s) 159, 186, 483, 629
BslFI GGGAC 2 cut(s) 487, 551
BslI CCNNNNNNNGG 5 cut(s) 178, 179, 310, 395, 602
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 2 cut(s) 487, 551
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 2 cut(s) 588, 766
Bsp119I TTCGAA 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 5 cut(s) 79, 200, 582, 585, 685
BspANI GGCC 2 cut(s) 588, 766
BspHI TCATGA 2 cut(s) 250, 673
BspLI GGNNCC 2 cut(s) 142, 184
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 708, 758
BssMI GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
BssSI CACGAG 1 cut(s) 842
BssT1I CCWWGG 2 cut(s) 708, 758
Bst2BI CACGAG 1 cut(s) 842
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 931
BstBAI YACGTR 1 cut(s) 681
BstBI TTCGAA 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 484, 826
BstDSI CCRYGG 1 cut(s) 758
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 280, 905
BstKTI GATC 7 cut(s) 48, 99, 324, 357, 364, 443, 657
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 2 cut(s) 588, 766
BtgI CCRYGG 1 cut(s) 758
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 280, 905
Cac8I GCNNGC 2 cut(s) 484, 826
CciI TCATGA 2 cut(s) 250, 673
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 3 cut(s) 587, 622, 631
Csp6I GTAC 2 cut(s) 17, 334
CviAII CATG 8 cut(s) 236, 251, 400, 506, 638, 658, 674, 759
CviQI GTAC 2 cut(s) 17, 334
DpnI GATC 7 cut(s) 47, 98, 323, 356, 363, 442, 656
DpnII GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
Eco130I CCWWGG 2 cut(s) 708, 758
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 622, 631
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 708, 758
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 708, 758
FaeI CATG 8 cut(s) 239, 254, 403, 509, 641, 661, 677, 762
FaqI GGGAC 2 cut(s) 487, 551
FatI CATG 8 cut(s) 235, 250, 399, 505, 637, 657, 673, 758
Fnu4HI GCNGC 5 cut(s) 80, 583, 586, 686, 755
FokI GGATG 2 cut(s) 287, 892
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 5 cut(s) 80, 583, 586, 686, 755
FspBI CTAG 2 cut(s) 563, 689
GluI GCNGC 5 cut(s) 80, 583, 586, 686, 755
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 588, 766
HapII CCGG 4 cut(s) 159, 186, 483, 629
Hin1II CATG 8 cut(s) 239, 254, 403, 509, 641, 661, 677, 762
HinfI GANTC 3 cut(s) 452, 725, 874
HpaII CCGG 4 cut(s) 159, 186, 483, 629
HphI GGTGA 2 cut(s) 200, 829
Hpy166II GTNNAC 2 cut(s) 334, 805
Hpy188I TCNGA 3 cut(s) 33, 214, 819
Hpy8I GTNNAC 2 cut(s) 334, 805
HpyAV CCTTC 5 cut(s) 250, 400, 475, 710, 895
HpyCH4III ACNGT 1 cut(s) 931
HpyCH4IV ACGT 2 cut(s) 534, 680
HpyCH4V TGCA 3 cut(s) 476, 539, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpySE526I ACGT 2 cut(s) 534, 680
Hsp92II CATG 8 cut(s) 239, 254, 403, 509, 641, 661, 677, 762
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Kzo9I GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
LmnI GCTCC 4 cut(s) 52, 146, 316, 867
Lsp1109I GCAGC 1 cut(s) 741
LweI GCATC 2 cut(s) 47, 265
MaeI CTAG 2 cut(s) 563, 689
MaeII ACGT 2 cut(s) 534, 680
MaeIII GTNAC 2 cut(s) 605, 794
MalI GATC 7 cut(s) 47, 98, 323, 356, 363, 442, 656
MboI GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
MboII GAAGA 6 cut(s) 77, 116, 280, 661, 664, 859
MfeI CAATTG 3 cut(s) 74, 477, 738
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 9 cut(s) 25, 68, 74, 477, 738, 773, 850, 866, 890
MlyI GAGTC 2 cut(s) 446, 868
MmeI TCCRAC 2 cut(s) 56, 457
MroNI GCCGGC 1 cut(s) 482
MroXI GAANNNNTTC 2 cut(s) 108, 854
MslI CAYNNNNRTG 2 cut(s) 491, 639
MspI CCGG 4 cut(s) 159, 186, 483, 629
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 3 cut(s) 74, 477, 738
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 763
NaeI GCCGGC 1 cut(s) 484
NcoI CCATGG 1 cut(s) 758
NdeII GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 8 cut(s) 239, 254, 403, 509, 641, 661, 677, 762
NlaIV GGNNCC 2 cut(s) 142, 184
NmuCI GTSAC 1 cut(s) 794
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 888
PagI TCATGA 2 cut(s) 250, 673
PctI GAATGC 1 cut(s) 828
PdiI GCCGGC 1 cut(s) 484
PdmI GAANNNNTTC 2 cut(s) 108, 854
PfeI GAWTC 1 cut(s) 725
PflFI GACNNNGTC 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 5 cut(s) 81, 584, 587, 687, 756
PleI GAGTC 2 cut(s) 446, 868
PpsI GAGTC 2 cut(s) 446, 868
Ppu21I YACGTR 1 cut(s) 681
PshAI GACNNNNGTC 1 cut(s) 513
PsiI TTATAA 2 cut(s) 42, 93
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 142, 184
PspPI GGNCC 3 cut(s) 587, 622, 631
PsuI RGATCY 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 2 cut(s) 18, 335
RsaNI GTAC 2 cut(s) 17, 334
RseI CAYNNNNRTG 2 cut(s) 491, 639
SatI GCNGC 5 cut(s) 80, 583, 586, 686, 755
Sau3AI GATC 7 cut(s) 45, 96, 321, 354, 361, 440, 654
Sau96I GGNCC 3 cut(s) 587, 622, 631
SchI GAGTC 2 cut(s) 446, 868
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 2 cut(s) 47, 265
SfuI TTCGAA 1 cut(s) 888
SinI GGWCC 2 cut(s) 622, 631
SmiMI CAYNNNNRTG 2 cut(s) 491, 639
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 9 cut(s) 25, 68, 74, 477, 738, 773, 850, 866, 890
SsiI CCGC 5 cut(s) 79, 200, 582, 585, 685
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 563, 689
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 2 cut(s) 708, 758
TaaI ACNGT 1 cut(s) 931
TaiI ACGT 2 cut(s) 537, 683
TaqI TCGA 4 cut(s) 243, 375, 445, 888
TasI AATT 9 cut(s) 25, 68, 74, 477, 738, 773, 850, 866, 890
TauI GCSGC 4 cut(s) 82, 585, 588, 688
TfiI GAWTC 1 cut(s) 725
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 5 cut(s) 78, 224, 239, 662, 786
Tth111I GACNNNGTC 1 cut(s) 800
VpaK11BI GGWCC 2 cut(s) 622, 631
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 1 cut(s) 890
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XmnI GAANNNNTTC 2 cut(s) 108, 854
XspI CTAG 2 cut(s) 563, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.