RNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF1668 | PF07893 | 128 - 222 | 3.1e-09 | Protein of unknown function (DUF1668) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| Acc36I | ACCTGC | 1 cut(s) | 732 |
| AccB1I | GGYRCC | 1 cut(s) | 584 |
| AccII | CGCG | 3 cut(s) | 51, 90, 815 |
| AciI | CCGC | 9 cut(s) | 49, 88, 234, 423, 468, 506, 684, 778, 815 |
| AclWI | GGATC | 3 cut(s) | 80, 186, 479 |
| AcsI | RAATTY | 1 cut(s) | 395 |
| AfaI | GTAC | 2 cut(s) | 38, 875 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 494, 495 |
| AgsI | TTSAA | 4 cut(s) | 58, 241, 1013, 1019 |
| AjnI | CCWGG | 1 cut(s) | 973 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 209, 241 |
| AluBI | AGCT | 4 cut(s) | 430, 451, 564, 1136 |
| AluI | AGCT | 4 cut(s) | 430, 451, 564, 1136 |
| Alw21I | GWGCWC | 1 cut(s) | 1152 |
| Alw26I | GTCTC | 2 cut(s) | 604, 652 |
| AlwI | GGATC | 3 cut(s) | 80, 186, 479 |
| AoxI | GGCC | 2 cut(s) | 280, 685 |
| ApeKI | GCWGC | 3 cut(s) | 322, 325, 847 |
| ApoI | RAATTY | 1 cut(s) | 395 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 603, 635 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 2 cut(s) | 281, 686 |
| AsuC2I | CCSGG | 1 cut(s) | 186 |
| AsuHPI | GGTGA | 1 cut(s) | 542 |
| AsuII | TTCGAA | 1 cut(s) | 315 |
| AsuNHI | GCTAGC | 1 cut(s) | 560 |
| BanI | GGYRCC | 1 cut(s) | 584 |
| BanII | GRGCYC | 1 cut(s) | 215 |
| BauI | CACGAG | 1 cut(s) | 828 |
| BbsI | GAAGAC | 2 cut(s) | 114, 613 |
| Bbv12I | GWGCWC | 1 cut(s) | 1152 |
| BbvI | GCAGC | 3 cut(s) | 334, 337, 834 |
| BccI | CCATC | 2 cut(s) | 358, 830 |
| BceAI | ACGGC | 1 cut(s) | 274 |
| BciT130I | CCWGG | 1 cut(s) | 975 |
| BcnI | CCSGG | 1 cut(s) | 186 |
| BcoDI | GTCTC | 2 cut(s) | 604, 652 |
| BfaI | CTAG | 3 cut(s) | 372, 561, 782 |
| BfmI | CTRYAG | 1 cut(s) | 757 |
| BfuAI | ACCTGC | 1 cut(s) | 732 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 684 |
| BglII | AGATCT | 1 cut(s) | 707 |
| BisI | GCNGC | 7 cut(s) | 235, 323, 326, 507, 685, 779, 848 |
| BlsI | GCNGC | 7 cut(s) | 236, 324, 327, 508, 686, 780, 849 |
| Bme1390I | CCNGG | 2 cut(s) | 186, 975 |
| BmgT120I | GGNCC | 2 cut(s) | 281, 686 |
| BmiI | GGNNCC | 2 cut(s) | 214, 586 |
| BmrFI | CCNGG | 2 cut(s) | 186, 975 |
| BmrI | ACTGGG | 1 cut(s) | 278 |
| BmsI | GCATC | 2 cut(s) | 278, 358 |
| BmtI | GCTAGC | 1 cut(s) | 564 |
| BmuI | ACTGGG | 1 cut(s) | 278 |
| BoxI | GACNNNNGTC | 1 cut(s) | 612 |
| BpiI | GAAGAC | 2 cut(s) | 114, 613 |
| Bpu14I | TTCGAA | 1 cut(s) | 315 |
| BpuEI | CTTGAG | 1 cut(s) | 884 |
| BpuMI | CCSGG | 1 cut(s) | 186 |
| BsaI | GGTCTC | 1 cut(s) | 652 |
| BsaJI | CCNNGG | 4 cut(s) | 184, 679, 801, 1032 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 494, 495 |
| Bse118I | RCCGGY | 2 cut(s) | 170, 230 |
| Bse1I | ACTGG | 2 cut(s) | 284, 662 |
| BseBI | CCWGG | 1 cut(s) | 975 |
| BseDI | CCNNGG | 4 cut(s) | 184, 679, 801, 1032 |
| BseGI | GGATG | 5 cut(s) | 136, 269, 307, 373, 736 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 494, 495 |
| BseNI | ACTGG | 2 cut(s) | 284, 662 |
| BseRI | GAGGAG | 2 cut(s) | 26, 29 |
| BseXI | GCAGC | 3 cut(s) | 334, 337, 834 |
| BseYI | CCCAGC | 1 cut(s) | 245 |
| Bsh1236I | CGCG | 3 cut(s) | 51, 90, 815 |
| BshFI | GGCC | 2 cut(s) | 282, 687 |
| BshNI | GGYRCC | 1 cut(s) | 584 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1152 |
| BsiSI | CCGG | 4 cut(s) | 171, 186, 231, 728 |
| BslFI | GGGAC | 5 cut(s) | 16, 236, 600, 650, 941 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 494, 495 |
| BsmAI | GTCTC | 2 cut(s) | 604, 652 |
| BsmFI | GGGAC | 5 cut(s) | 16, 236, 600, 650, 941 |
| BsnI | GGCC | 2 cut(s) | 282, 687 |
| Bso31I | GGTCTC | 1 cut(s) | 652 |
| Bsp119I | TTCGAA | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 2 cut(s) | 215, 1152 |
| Bsp1407I | TGTACA | 1 cut(s) | 36 |
| Bsp143I | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| BspACI | CCGC | 9 cut(s) | 49, 88, 234, 423, 468, 506, 684, 778, 815 |
| BspANI | GGCC | 2 cut(s) | 282, 687 |
| BspFNI | CGCG | 3 cut(s) | 51, 90, 815 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 2 cut(s) | 214, 586 |
| BspMI | ACCTGC | 1 cut(s) | 732 |
| BspOI | GCTAGC | 1 cut(s) | 564 |
| BspPI | GGATC | 3 cut(s) | 80, 186, 479 |
| BspT104I | TTCGAA | 1 cut(s) | 315 |
| BspT107I | GGYRCC | 1 cut(s) | 584 |
| BspTNI | GGTCTC | 1 cut(s) | 652 |
| BsrFI | RCCGGY | 2 cut(s) | 170, 230 |
| BsrGI | TGTACA | 1 cut(s) | 36 |
| BsrI | ACTGG | 2 cut(s) | 284, 662 |
| BssAI | RCCGGY | 2 cut(s) | 170, 230 |
| BssECI | CCNNGG | 4 cut(s) | 184, 679, 801, 1032 |
| BssMI | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 2 cut(s) | 801, 1032 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 1 cut(s) | 975 |
| Bst4CI | ACNGT | 3 cut(s) | 554, 855, 966 |
| BstAUI | TGTACA | 1 cut(s) | 36 |
| BstBI | TTCGAA | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 6 cut(s) | 172, 232, 390, 562, 583, 919 |
| BstF5I | GGATG | 5 cut(s) | 136, 269, 307, 373, 736 |
| BstFNI | CGCG | 3 cut(s) | 51, 90, 815 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 6 cut(s) | 75, 136, 181, 487, 710, 769 |
| BstMAI | GTCTC | 2 cut(s) | 604, 652 |
| BstMBI | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 151, 167, 684, 856 |
| BstNI | CCWGG | 1 cut(s) | 975 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 612 |
| BstSCI | CCNGG | 2 cut(s) | 184, 973 |
| BstSFI | CTRYAG | 1 cut(s) | 757 |
| BstUI | CGCG | 3 cut(s) | 51, 90, 815 |
| BstV1I | GCAGC | 3 cut(s) | 334, 337, 834 |
| BstV2I | GAAGAC | 2 cut(s) | 114, 613 |
| BstX2I | RGATCY | 3 cut(s) | 72, 178, 707 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 291 |
| BstYI | RGATCY | 3 cut(s) | 72, 178, 707 |
| BsuRI | GGCC | 2 cut(s) | 282, 687 |
| BtsCI | GGATG | 5 cut(s) | 136, 269, 307, 373, 736 |
| BveI | ACCTGC | 1 cut(s) | 732 |
| Cac8I | GCNNGC | 6 cut(s) | 172, 232, 390, 562, 583, 919 |
| CciI | TCATGA | 1 cut(s) | 763 |
| CfoI | GCGC | 1 cut(s) | 92 |
| Cfr10I | RCCGGY | 2 cut(s) | 170, 230 |
| Cfr13I | GGNCC | 2 cut(s) | 281, 686 |
| CseI | GACGC | 3 cut(s) | 29, 238, 1075 |
| Csp6I | GTAC | 2 cut(s) | 37, 874 |
| CviAII | CATG | 4 cut(s) | 605, 764, 990, 1075 |
| CviQI | GTAC | 2 cut(s) | 37, 874 |
| DpnI | GATC | 6 cut(s) | 74, 135, 180, 486, 709, 768 |
| DpnII | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| Eco130I | CCWWGG | 2 cut(s) | 801, 1032 |
| Eco24I | GRGCYC | 1 cut(s) | 215 |
| Eco31I | GGTCTC | 1 cut(s) | 652 |
| Eco32I | GATATC | 1 cut(s) | 85 |
| EcoRII | CCWGG | 1 cut(s) | 973 |
| EcoRV | GATATC | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 2 cut(s) | 801, 1032 |
| EcoT38I | GRGCYC | 1 cut(s) | 215 |
| ErhI | CCWWGG | 2 cut(s) | 801, 1032 |
| FaeI | CATG | 4 cut(s) | 608, 767, 993, 1078 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 906, 938 |
| FaqI | GGGAC | 5 cut(s) | 16, 236, 600, 650, 941 |
| FatI | CATG | 4 cut(s) | 604, 763, 989, 1074 |
| FauI | CCCGC | 3 cut(s) | 56, 416, 475 |
| FauNDI | CATATG | 1 cut(s) | 41 |
| Fnu4HI | GCNGC | 7 cut(s) | 235, 323, 326, 507, 685, 779, 848 |
| FokI | GGATG | 5 cut(s) | 123, 256, 314, 380, 743 |
| FriOI | GRGCYC | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 7 cut(s) | 235, 323, 326, 507, 685, 779, 848 |
| FspBI | CTAG | 3 cut(s) | 372, 561, 782 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 7 cut(s) | 235, 323, 326, 507, 685, 779, 848 |
| GsaI | CCCAGC | 1 cut(s) | 249 |
| HaeIII | GGCC | 2 cut(s) | 282, 687 |
| HapII | CCGG | 4 cut(s) | 171, 186, 231, 728 |
| HgaI | GACGC | 3 cut(s) | 29, 238, 1075 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1II | CATG | 4 cut(s) | 608, 767, 993, 1078 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HincII | GTYRAC | 1 cut(s) | 703 |
| HindII | GTYRAC | 1 cut(s) | 703 |
| HinfI | GANTC | 1 cut(s) | 818 |
| HpaII | CCGG | 4 cut(s) | 171, 186, 231, 728 |
| HphI | GGTGA | 1 cut(s) | 542 |
| Hpy166II | GTNNAC | 4 cut(s) | 703, 898, 944, 1039 |
| Hpy188I | TCNGA | 4 cut(s) | 65, 178, 912, 1154 |
| Hpy188III | TCNNGA | 4 cut(s) | 273, 358, 764, 863 |
| Hpy8I | GTNNAC | 4 cut(s) | 703, 898, 944, 1039 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 121 |
| HpyCH4III | ACNGT | 3 cut(s) | 554, 855, 966 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 535 |
| HpyCH4V | TGCA | 3 cut(s) | 145, 388, 575 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 151, 167, 684, 856 |
| HpySE526I | ACGT | 2 cut(s) | 60, 535 |
| Hsp92II | CATG | 4 cut(s) | 608, 767, 993, 1078 |
| HspAI | GCGC | 1 cut(s) | 90 |
| KroI | GCCGGC | 2 cut(s) | 170, 230 |
| KroNI | GCCGGC | 2 cut(s) | 172, 232 |
| Kzo9I | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| LmnI | GCTCC | 1 cut(s) | 218 |
| Lsp1109I | GCAGC | 3 cut(s) | 334, 337, 834 |
| LweI | GCATC | 2 cut(s) | 278, 358 |
| MaeI | CTAG | 3 cut(s) | 372, 561, 782 |
| MaeII | ACGT | 2 cut(s) | 60, 535 |
| MaeIII | GTNAC | 1 cut(s) | 928 |
| MalI | GATC | 6 cut(s) | 74, 135, 180, 486, 709, 768 |
| MboI | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| MboII | GAAGA | 6 cut(s) | 114, 373, 613, 751, 754, 1064 |
| MfeI | CAATTG | 1 cut(s) | 935 |
| MflI | RGATCY | 3 cut(s) | 72, 178, 707 |
| MhlI | GDGCHC | 2 cut(s) | 215, 1152 |
| MluCI | AATT | 8 cut(s) | 106, 146, 219, 349, 395, 935, 1013, 1070 |
| MmeI | TCCRAC | 2 cut(s) | 43, 890 |
| MreI | CGCCGGCG | 1 cut(s) | 230 |
| MroNI | GCCGGC | 2 cut(s) | 170, 230 |
| MseI | TTAA | 2 cut(s) | 96, 353 |
| MslI | CAYNNNNRTG | 2 cut(s) | 300, 590 |
| MspA1I | CMGCKG | 1 cut(s) | 1136 |
| MspI | CCGG | 4 cut(s) | 171, 186, 231, 728 |
| MspR9I | CCNGG | 2 cut(s) | 186, 975 |
| MunI | CAATTG | 1 cut(s) | 935 |
| MvaI | CCWGG | 1 cut(s) | 975 |
| MvnI | CGCG | 3 cut(s) | 51, 90, 815 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 151, 167, 684, 856 |
| NaeI | GCCGGC | 2 cut(s) | 172, 232 |
| NciI | CCSGG | 1 cut(s) | 186 |
| NdeI | CATATG | 1 cut(s) | 41 |
| NdeII | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| NgoMIV | GCCGGC | 2 cut(s) | 170, 230 |
| NheI | GCTAGC | 1 cut(s) | 560 |
| NlaIII | CATG | 4 cut(s) | 608, 767, 993, 1078 |
| NlaIV | GGNNCC | 2 cut(s) | 214, 586 |
| NmeAIII | GCCGAG | 1 cut(s) | 704 |
| NspV | TTCGAA | 1 cut(s) | 315 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PdiI | GCCGGC | 2 cut(s) | 172, 232 |
| PfeI | GAWTC | 1 cut(s) | 818 |
| PkrI | GCNGC | 7 cut(s) | 236, 324, 327, 508, 686, 780, 849 |
| PshAI | GACNNNNGTC | 1 cut(s) | 612 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| Psp6I | CCWGG | 1 cut(s) | 973 |
| PspFI | CCCAGC | 1 cut(s) | 245 |
| PspGI | CCWGG | 1 cut(s) | 973 |
| PspN4I | GGNNCC | 2 cut(s) | 214, 586 |
| PspPI | GGNCC | 2 cut(s) | 281, 686 |
| PsuI | RGATCY | 3 cut(s) | 72, 178, 707 |
| PvuII | CAGCTG | 1 cut(s) | 1136 |
| RsaI | GTAC | 2 cut(s) | 38, 875 |
| RsaNI | GTAC | 2 cut(s) | 37, 874 |
| RseI | CAYNNNNRTG | 2 cut(s) | 300, 590 |
| SaqAI | TTAA | 2 cut(s) | 96, 353 |
| SatI | GCNGC | 7 cut(s) | 235, 323, 326, 507, 685, 779, 848 |
| Sau3AI | GATC | 6 cut(s) | 72, 133, 178, 484, 707, 766 |
| Sau96I | GGNCC | 2 cut(s) | 281, 686 |
| ScrFI | CCNGG | 2 cut(s) | 186, 975 |
| SduI | GDGCHC | 2 cut(s) | 215, 1152 |
| SfaNI | GCATC | 2 cut(s) | 278, 358 |
| SfcI | CTRYAG | 1 cut(s) | 757 |
| SfuI | TTCGAA | 1 cut(s) | 315 |
| SgrAI | CRCCGGYG | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 300, 590 |
| SmlI | CTYRAG | 1 cut(s) | 863 |
| SmoI | CTYRAG | 1 cut(s) | 863 |
| Sse9I | AATT | 8 cut(s) | 106, 146, 219, 349, 395, 935, 1013, 1070 |
| SsiI | CCGC | 9 cut(s) | 49, 88, 234, 423, 468, 506, 684, 778, 815 |
| SspMI | CTAG | 3 cut(s) | 372, 561, 782 |
| StyD4I | CCNGG | 2 cut(s) | 184, 973 |
| StyI | CCWWGG | 2 cut(s) | 801, 1032 |
| TaaI | ACNGT | 3 cut(s) | 554, 855, 966 |
| TaiI | ACGT | 2 cut(s) | 63, 538 |
| TaqI | TCGA | 4 cut(s) | 132, 315, 630, 720 |
| TasI | AATT | 8 cut(s) | 106, 146, 219, 349, 395, 935, 1013, 1070 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TauI | GCSGC | 4 cut(s) | 237, 509, 687, 781 |
| TfiI | GAWTC | 1 cut(s) | 818 |
| Tru1I | TTAA | 2 cut(s) | 96, 353 |
| Tru9I | TTAA | 2 cut(s) | 96, 353 |
| TseI | GCWGC | 3 cut(s) | 322, 325, 847 |
| TspDTI | ATGAA | 4 cut(s) | 17, 520, 966, 1063 |
| TspGWI | ACGGA | 2 cut(s) | 85, 129 |
| XapI | RAATTY | 1 cut(s) | 395 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 651 |
| XspI | CTAG | 3 cut(s) | 372, 561, 782 |