FvH4_1g03870

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Reverse (-)
2052420 .. 2054171
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03870.t1

Sequence Viewer

Length: 945 bp
ATGTCCCCTATCGTCAGACCCAGAATTCTGGTTCGTCATTGCTGCGCTCTACAGAGGCACAAGAGGCACAGGAGTGATGGATGCATCATGATGAAGAAGAAGAAGAAGCAGAAGCAGAAGAAGAAGAAAATCAGATTATGGGAGATGGTGAAGCAGACAACGGAGAAGTTGGAGTTGGAGGAACAAGAGGCTAATAAGACCCTCTACTTATGTTTCCATGAAGAACACAAGGATGAAAGCTTCAGTTTTGTTGTTCGCACCATCACTTTATCCGATCTCTTCGATCGTGAAAAAGAAGAAGAAGAAGAAGTGCAATTAGGGCAAGTGGCTTATAAGAACGTTCCGGATTTGATCGGTTGCGGTGTTTTCCGCTCCCAAATCGTTATCGCCGGCGGCTTGGACCCCAGCTTGGCTACCGGCTATGCGTGGGTACGTTCTGAACTTTGGAATAGGAATGTTTATAGCTTTGGGGTTGATGACAATAGAATCAGGAAGATGGATGCGAGTTTACAGAAAGGGAAATATGAGCCTATGATGATGGAGTTAGATGGGAAACTGTACGCTCTATCCTATAGATTGGTGGCTGATCCTCCCTCGTTTGAGGTGTTTGACCCTGAAATAGGCAAATGGGAAGGTTTGCCGCAACCTCCATTTTTCCAACCTCTCTCTCCATATTACACACATGCTGACTTCTCTTATGTAACTTCCGGCACCAAGATGTTTGTGTCCCAAGAACGATGTCCGGTGTTCTGCTTTGACGTGGCTCACCCGGACAGAGAATGGAGACTAGTCCCTACTATGTGCAGCGGCGGCCCTTTTCCCTTTTCTGGCCCAGCTTTAGTCCTGGACCTGCCGGAGCAAAATGACATCAACAACAAGAAGCTCATTTTCGGTTATAAGTTTGAGTTTATGTTATTTGCTTGGAGGATAATCAAGAATCCCTGA

Protein Analysis

315

Amino Acids

36.64

Weight (kDa)

8.49

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 164 - 277 2.3e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 333, 897
Acc36I ACCTGC 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 6 cut(s) 360, 370, 393, 641, 807, 810
AclI AACGTT 1 cut(s) 339
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 226
AfaI GTAC 2 cut(s) 432, 560
AfiI CCNNNNNNNGG 3 cut(s) 409, 620, 827
AhlI ACTAGT 1 cut(s) 787
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 843
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 5 cut(s) 240, 408, 465, 836, 883
AluI AGCT 5 cut(s) 240, 408, 465, 836, 883
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 2 cut(s) 811, 829
ApeKI GCWGC 2 cut(s) 42, 804
ApoI RAATTY 1 cut(s) 24
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 4 cut(s) 400, 812, 830, 847
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 2 cut(s) 160, 758
AvaII GGWCC 2 cut(s) 400, 847
BanI GGYRCC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 29, 816
BccI CCATC 6 cut(s) 71, 139, 269, 490, 532, 542
BciT130I CCWGG 1 cut(s) 845
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 1 cut(s) 778
BcuI ACTAGT 1 cut(s) 787
BfaI CTAG 1 cut(s) 788
BfmI CTRYAG 2 cut(s) 50, 571
BfuAI ACCTGC 1 cut(s) 858
BisI GCNGC 6 cut(s) 43, 394, 641, 805, 808, 811
BlsI GCNGC 6 cut(s) 44, 395, 642, 806, 809, 812
Bme1390I CCNGG 2 cut(s) 770, 845
Bme18I GGWCC 2 cut(s) 400, 847
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 4 cut(s) 400, 812, 830, 847
BmiI GGNNCC 2 cut(s) 402, 712
BmrFI CCNGG 2 cut(s) 770, 845
BmsI GCATC 3 cut(s) 71, 93, 490
BpuMI CCSGG 1 cut(s) 770
BsaWI WCCGGW 2 cut(s) 343, 742
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 620, 827
Bse118I RCCGGY 2 cut(s) 389, 416
Bse3DI GCAATG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 1 cut(s) 845
BseGI GGATG 3 cut(s) 86, 238, 505
BseLI CCNNNNNNNGG 3 cut(s) 409, 620, 827
BseMI GCAATG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 29, 816
BseYI CCCAGC 2 cut(s) 404, 832
BsgI GTGCAG 1 cut(s) 823
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 813, 831
BshNI GGYRCC 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 7 cut(s) 344, 390, 417, 708, 743, 770, 854
BslFI GGGAC 2 cut(s) 712, 776
BslI CCNNNNNNNGG 3 cut(s) 409, 620, 827
BsmAI GTCTC 1 cut(s) 778
BsmFI GGGAC 2 cut(s) 712, 776
BsnI GGCC 2 cut(s) 813, 831
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 274, 283, 351, 586
BspACI CCGC 6 cut(s) 360, 370, 393, 641, 807, 810
BspANI GGCC 2 cut(s) 813, 831
BspEI TCCGGA 1 cut(s) 343
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 402, 712
BspMI ACCTGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 2 cut(s) 389, 416
BssAI RCCGGY 2 cut(s) 389, 416
BssMI GATC 4 cut(s) 274, 283, 351, 586
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 3 cut(s) 86, 238, 505
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 277, 286, 354, 589
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 4 cut(s) 274, 283, 351, 586
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 64, 319, 810
BstNI CCWGG 1 cut(s) 845
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 768, 843
BstSFI CTRYAG 2 cut(s) 50, 571
BstV1I GCAGC 2 cut(s) 29, 816
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 813, 831
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 3 cut(s) 86, 238, 505
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 1 cut(s) 391
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 389, 416
Cfr13I GGNCC 4 cut(s) 400, 812, 830, 847
Csp6I GTAC 2 cut(s) 431, 559
CviAII CATG 3 cut(s) 88, 218, 683
CviQI GTAC 2 cut(s) 431, 559
DpnI GATC 4 cut(s) 276, 285, 353, 588
DpnII GATC 4 cut(s) 274, 283, 351, 586
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 400, 847
Eco57I CTGAAG 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 843
EcoT22I ATGCAT 1 cut(s) 86
FaeI CATG 3 cut(s) 91, 221, 686
FaqI GGGAC 2 cut(s) 712, 776
FatI CATG 3 cut(s) 87, 217, 682
Fnu4HI GCNGC 6 cut(s) 43, 394, 641, 805, 808, 811
FokI GGATG 3 cut(s) 93, 245, 512
Fsp4HI GCNGC 6 cut(s) 43, 394, 641, 805, 808, 811
FspBI CTAG 1 cut(s) 788
GlaI GCGC 1 cut(s) 46
GluI GCNGC 6 cut(s) 43, 394, 641, 805, 808, 811
GsaI CCCAGC 2 cut(s) 408, 836
HaeIII GGCC 2 cut(s) 813, 831
HapII CCGG 7 cut(s) 344, 390, 417, 708, 743, 770, 854
HhaI GCGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 91, 221, 686
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 2 cut(s) 486, 937
HpaII CCGG 7 cut(s) 344, 390, 417, 708, 743, 770, 854
HphI GGTGA 2 cut(s) 160, 758
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 17, 134, 274, 439
Hpy188III TCNNGA 5 cut(s) 88, 287, 344, 490, 934
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 626
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 3 cut(s) 339, 433, 759
HpyCH4V TGCA 3 cut(s) 84, 313, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 319, 810
HpySE526I ACGT 3 cut(s) 339, 433, 759
Hsp92II CATG 3 cut(s) 91, 221, 686
HspAI GCGC 1 cut(s) 45
Kpn2I TCCGGA 1 cut(s) 343
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 274, 283, 351, 586
LmnI GCTCC 2 cut(s) 377, 856
Lsp1109I GCAGC 2 cut(s) 29, 816
LweI GCATC 3 cut(s) 71, 93, 490
MaeI CTAG 1 cut(s) 788
MaeII ACGT 3 cut(s) 339, 433, 759
MaeIII GTNAC 1 cut(s) 700
MalI GATC 4 cut(s) 276, 285, 353, 588
MbiI CCGCTC 1 cut(s) 372
MboI GATC 4 cut(s) 274, 283, 351, 586
MluCI AATT 2 cut(s) 24, 314
MmeI TCCRAC 3 cut(s) 150, 156, 682
Mph1103I ATGCAT 1 cut(s) 86
MreI CGCCGGCG 1 cut(s) 389
MroI TCCGGA 1 cut(s) 343
MroNI GCCGGC 1 cut(s) 389
MslI CAYNNNNRTG 4 cut(s) 72, 89, 231, 716
MspA1I CMGCKG 1 cut(s) 807
MspI CCGG 7 cut(s) 344, 390, 417, 708, 743, 770, 854
MspR9I CCNGG 2 cut(s) 770, 845
MvaI CCWGG 1 cut(s) 845
MwoI GCNNNNNNNGC 3 cut(s) 64, 319, 810
NaeI GCCGGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 770
NdeII GATC 4 cut(s) 274, 283, 351, 586
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 91, 221, 686
NlaIV GGNNCC 2 cut(s) 402, 712
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 72
PagI TCATGA 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 486, 937
PfoI TCCNGGA 1 cut(s) 843
PkrI GCNGC 6 cut(s) 44, 395, 642, 806, 809, 812
Ple19I CGATCG 1 cut(s) 286
PsiI TTATAA 2 cut(s) 333, 897
Psp1406I AACGTT 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 843
PspFI CCCAGC 2 cut(s) 404, 832
PspGI CCWGG 1 cut(s) 843
PspN4I GGNNCC 2 cut(s) 402, 712
PspPI GGNCC 4 cut(s) 400, 812, 830, 847
PvuI CGATCG 1 cut(s) 286
RsaI GTAC 2 cut(s) 432, 560
RsaNI GTAC 2 cut(s) 431, 559
RseI CAYNNNNRTG 4 cut(s) 72, 89, 231, 716
SatI GCNGC 6 cut(s) 43, 394, 641, 805, 808, 811
Sau3AI GATC 4 cut(s) 274, 283, 351, 586
Sau96I GGNCC 4 cut(s) 400, 812, 830, 847
ScrFI CCNGG 2 cut(s) 770, 845
SfaNI GCATC 3 cut(s) 71, 93, 490
SfcI CTRYAG 2 cut(s) 50, 571
SgrAI CRCCGGYG 1 cut(s) 389
SinI GGWCC 2 cut(s) 400, 847
SmiMI CAYNNNNRTG 4 cut(s) 72, 89, 231, 716
SpeI ACTAGT 1 cut(s) 787
Sse9I AATT 2 cut(s) 24, 314
SsiI CCGC 6 cut(s) 360, 370, 393, 641, 807, 810
SspMI CTAG 1 cut(s) 788
StyD4I CCNGG 2 cut(s) 768, 843
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 3 cut(s) 342, 436, 762
TaqI TCGA 1 cut(s) 282
TasI AATT 2 cut(s) 24, 314
TauI GCSGC 4 cut(s) 396, 643, 810, 813
TfiI GAWTC 2 cut(s) 486, 937
TseI GCWGC 2 cut(s) 42, 804
TspDTI ATGAA 3 cut(s) 107, 234, 249
TspGWI ACGGA 1 cut(s) 176
VpaK11BI GGWCC 2 cut(s) 400, 847
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 686
XspI CTAG 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.