RLG00000015981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000213
Physical Location & Seq
Reverse (-)
2975304 .. 2977065
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015981

Sequence Viewer

Length: 696 bp
ATGAATGAAAAATTATTAAACCCGGGAAGCTACAGTGAAGAAGATGAAGAAGAAGAAAGGCGACACCGACATATGCACACAAGCAACTTGAAGTTGCCAGAGGAAGACGACGGCTCGAAACGCGACTTCGGACCGTATGGTCCATTCAGCATAGATTACAGCACAGAAGCTTATGCCTTGGATACCAAGGACCCCAAACACGGCATAGTCAAGATGGAGGAGACTTTACACAAAGGGAAATGTCAGCCGTTAATGGCTGAGATGGCCGGAAAACTTTACACTCTGTCCAGTGGTCCCAATATTCCTGGAAGTTTCGAGGTATTTGACCCCAAACAGGGGACTTGGCCGCCACTGCTAAACTTCCCTACAGGTGCTCGCTGGTTCTCTTATGCTATTCCGGGCACCAAGTTGTTTGCGTCCAGTGAAGGGCACTCGATATACTGCTTTGACCTTGGTGCCGCCGGTCGAACCAAAGAAAGAGGAATGGAACAGCGTCCCCACGGCCGGAGCTCCCTCGTGAACCATGCATGGGACCATCATTTGTTCCATCTAGGGGGAAACAATGTCTGCCTTGTGGCCATCCCCTTCAGAAACTCGAATGAAGAGGATGAAGCTTACGAGCCTGCGATTCATACCATACAAGGTGCTGCATGCATGCTATACCATTTCAATTTGAGTTTGATATCTCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.99

Weight (kDa)

5.79

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 138
AccB1I GGYRCC 2 cut(s) 401, 455
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 347, 459
AcoI YGGCCR 4 cut(s) 264, 344, 502, 576
AcuI CTGAAG 1 cut(s) 571
AfiI CCNNNNNNNGG 8 cut(s) 200, 334, 335, 336, 426, 504, 529, 553
AgsI TTSAA 2 cut(s) 91, 670
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 4 cut(s) 30, 170, 510, 614
AluI AGCT 4 cut(s) 30, 170, 510, 614
Alw21I GWGCWC 2 cut(s) 376, 512
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 4 cut(s) 264, 344, 502, 576
ApeKI GCWGC 1 cut(s) 647
AspS9I GGNCC 5 cut(s) 131, 140, 190, 293, 532
AsuC2I CCSGG 3 cut(s) 23, 24, 399
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 5 cut(s) 131, 140, 190, 293, 532
BaeGI GKGCMC 2 cut(s) 404, 432
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 2 cut(s) 401, 455
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 376, 512
BbvI GCAGC 1 cut(s) 634
BccI CCATC 5 cut(s) 208, 256, 543, 555, 587
BceAI ACGGC 4 cut(s) 127, 217, 232, 517
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 175
BcnI CCSGG 3 cut(s) 23, 24, 399
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 2 cut(s) 31, 366
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 3 cut(s) 347, 459, 648
BlsI GCNGC 3 cut(s) 348, 460, 649
Bme1390I CCNGG 4 cut(s) 23, 24, 306, 399
Bme18I GGWCC 5 cut(s) 131, 140, 190, 293, 532
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 5 cut(s) 131, 140, 190, 293, 532
BmiI GGNNCC 5 cut(s) 192, 295, 403, 457, 533
BmrFI CCNGG 4 cut(s) 23, 24, 306, 399
BpiI GAAGAC 1 cut(s) 111
BpuMI CCSGG 3 cut(s) 23, 24, 399
BsaJI CCNNGG 6 cut(s) 22, 177, 186, 451, 499, 689
Bsc4I CCNNNNNNNGG 8 cut(s) 200, 334, 335, 336, 426, 504, 529, 553
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 288, 420
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 6 cut(s) 22, 177, 186, 451, 499, 689
BseGI GGATG 2 cut(s) 579, 613
BseLI CCNNNNNNNGG 8 cut(s) 200, 334, 335, 336, 426, 504, 529, 553
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 288, 420
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 2 cut(s) 404, 432
BseX3I CGGCCG 1 cut(s) 502
BseXI GCAGC 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 2 cut(s) 466, 505
BshFI GGCC 4 cut(s) 266, 346, 504, 578
BshNI GGYRCC 2 cut(s) 401, 455
BsiEI CGRYCG 2 cut(s) 466, 505
BsiHKAI GWGCWC 2 cut(s) 376, 512
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 5 cut(s) 23, 267, 398, 462, 505
BslFI GGGAC 4 cut(s) 279, 352, 480, 545
BslI CCNNNNNNNGG 8 cut(s) 200, 334, 335, 336, 426, 504, 529, 553
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 4 cut(s) 279, 352, 480, 545
BsnI GGCC 4 cut(s) 266, 346, 504, 578
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 4 cut(s) 376, 404, 432, 512
BspACI CCGC 2 cut(s) 347, 459
BspANI GGCC 4 cut(s) 266, 346, 504, 578
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 192, 295, 403, 457, 533
BspT107I GGYRCC 2 cut(s) 401, 455
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 2 cut(s) 288, 420
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 6 cut(s) 22, 177, 186, 451, 499, 689
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 4 cut(s) 177, 186, 451, 689
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 35, 135
Bst6I CTCTTC 1 cut(s) 597
BstC8I GCNNGC 4 cut(s) 376, 624, 652, 656
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 579, 613
BstFNI CGCG 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 215
BstMCI CGRYCG 2 cut(s) 466, 505
BstMWI GCNNNNNNNGC 3 cut(s) 120, 263, 352
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 654, 658
BstSCI CCNGG 4 cut(s) 21, 22, 304, 397
BstSFI CTRYAG 2 cut(s) 31, 366
BstSLI GKGCMC 2 cut(s) 404, 432
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 111
BstZI CGGCCG 1 cut(s) 502
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 4 cut(s) 266, 346, 504, 578
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 2 cut(s) 579, 613
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 4 cut(s) 40, 295, 350, 427
Cac8I GCNNGC 4 cut(s) 376, 624, 652, 656
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 5 cut(s) 131, 140, 190, 293, 532
Cfr9I CCCGGG 1 cut(s) 22
CpoI CGGWCCG 1 cut(s) 131
CseI GACGC 2 cut(s) 405, 482
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 4 cut(s) 524, 528, 651, 655
DdeI CTNAG 1 cut(s) 258
DrdI GACNNNNNNGTC 1 cut(s) 138
DseDI GACNNNNNNGTC 1 cut(s) 138
EaeI YGGCCR 4 cut(s) 264, 344, 502, 576
EagI CGGCCG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 502
Eco130I CCWWGG 4 cut(s) 177, 186, 451, 689
Eco24I GRGCYC 1 cut(s) 512
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 5 cut(s) 131, 140, 190, 293, 532
Eco52I CGGCCG 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 571
Eco88I CYCGRG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 4 cut(s) 177, 186, 451, 689
EcoT22I ATGCAT 2 cut(s) 529, 656
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 4 cut(s) 177, 186, 451, 689
FaeI CATG 4 cut(s) 527, 531, 654, 658
FaqI GGGAC 4 cut(s) 279, 352, 480, 545
FatI CATG 4 cut(s) 523, 527, 650, 654
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 347, 459, 648
FokI GGATG 2 cut(s) 566, 620
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 3 cut(s) 347, 459, 648
FspBI CTAG 1 cut(s) 551
GluI GCNGC 3 cut(s) 347, 459, 648
HaeIII GGCC 4 cut(s) 266, 346, 504, 578
HapII CCGG 5 cut(s) 23, 267, 398, 462, 505
HgaI GACGC 2 cut(s) 405, 482
Hin1II CATG 4 cut(s) 527, 531, 654, 658
HindIII AAGCTT 2 cut(s) 168, 612
HinfI GANTC 1 cut(s) 628
HpaII CCGG 5 cut(s) 23, 267, 398, 462, 505
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 131, 590
Hpy188III TCNNGA 2 cut(s) 211, 517
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 419, 595
HpyCH4III ACNGT 2 cut(s) 35, 135
HpyCH4V TGCA 4 cut(s) 76, 527, 650, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 263, 352
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 4 cut(s) 527, 531, 654, 658
LmnI GCTCC 2 cut(s) 507, 515
Lsp1109I GCAGC 1 cut(s) 634
MaeI CTAG 1 cut(s) 551
MboII GAAGA 7 cut(s) 50, 53, 59, 62, 65, 116, 614
MhlI GDGCHC 4 cut(s) 376, 404, 432, 512
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 2 cut(s) 11, 670
MluNI TGGCCA 1 cut(s) 578
MnlI CCTC 6 cut(s) 94, 211, 310, 473, 524, 598
Mox20I TGGCCA 1 cut(s) 578
Mph1103I ATGCAT 2 cut(s) 529, 656
MscI TGGCCA 1 cut(s) 578
MseI TTAA 2 cut(s) 17, 251
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 5 cut(s) 23, 267, 398, 462, 505
MspR9I CCNGG 4 cut(s) 23, 24, 306, 399
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 120, 263, 352
NciI CCSGG 3 cut(s) 23, 24, 399
NdeI CATATG 1 cut(s) 72
NlaIII CATG 4 cut(s) 527, 531, 654, 658
NlaIV GGNNCC 5 cut(s) 192, 295, 403, 457, 533
NsiI ATGCAT 2 cut(s) 529, 656
NspI RCATGY 2 cut(s) 654, 658
PaeI GCATGC 2 cut(s) 654, 658
PfeI GAWTC 1 cut(s) 628
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 3 cut(s) 348, 460, 649
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 5 cut(s) 192, 295, 403, 457, 533
PspPI GGNCC 5 cut(s) 131, 140, 190, 293, 532
PspPPI RGGWCCY 1 cut(s) 190
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 17, 251
SatI GCNGC 3 cut(s) 347, 459, 648
Sau96I GGNCC 5 cut(s) 131, 140, 190, 293, 532
ScrFI CCNGG 4 cut(s) 23, 24, 306, 399
SduI GDGCHC 4 cut(s) 376, 404, 432, 512
SetI ASST 9 cut(s) 32, 172, 321, 373, 453, 512, 616, 646, 695
SfcI CTRYAG 2 cut(s) 31, 366
SinI GGWCC 5 cut(s) 131, 140, 190, 293, 532
SmaI CCCGGG 1 cut(s) 24
SphI GCATGC 2 cut(s) 654, 658
Sse9I AATT 2 cut(s) 11, 670
SsiI CCGC 2 cut(s) 347, 459
SspI AATATT 1 cut(s) 301
SspMI CTAG 1 cut(s) 551
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 4 cut(s) 21, 22, 304, 397
StyI CCWWGG 4 cut(s) 177, 186, 451, 689
TaaI ACNGT 2 cut(s) 35, 135
TaqI TCGA 5 cut(s) 116, 315, 434, 466, 596
TasI AATT 2 cut(s) 11, 670
TauI GCSGC 2 cut(s) 349, 461
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 2 cut(s) 17, 251
Tru9I TTAA 2 cut(s) 17, 251
TscAI CASTG 4 cut(s) 40, 295, 357, 427
TseI GCWGC 1 cut(s) 647
TspDTI ATGAA 6 cut(s) 17, 21, 60, 615, 620, 624
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 4 cut(s) 40, 295, 357, 427
VpaK11BI GGWCC 5 cut(s) 131, 140, 190, 293, 532
XceI RCATGY 2 cut(s) 654, 658
XmaI CCCGGG 1 cut(s) 22
XspI CTAG 1 cut(s) 551
Zsp2I ATGCAT 2 cut(s) 529, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.