Rroxscaffold_2G00150950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000213
Physical Location & Seq
Reverse (-)
88309952 .. 88310444
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150950.1

Sequence Viewer

Length: 360 bp
ATGTGCCAACGCGGCCCTTTTCCTTTTAGAAACAAAGCTTTGGTCCTGGACCTGCCGGCGGGTGCTGATGACAAGAAGAAGATAATGTTTGCCTATAGTTTTGGTCAAGATCAGAAAGCCTGCATTGTTGCCCCCGAATTGGTTAGGCCATATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACGGGGTATTGCCATACCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACTCTCCAATTCATGCCTACTCGAATCTTCGACTTCTATACCAACCCATCCACTTTTCCTGATCCTGAAGCGGAAGGTTGCTTTGTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

5.79

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 12, 59, 338
AclWI GGATC 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 58, 139
AgsI TTSAA 2 cut(s) 218, 224
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 323
AoxI GGCC 2 cut(s) 13, 146
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspS9I GGNCC 4 cut(s) 14, 43, 49, 161
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 3 cut(s) 43, 49, 161
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 3 cut(s) 43, 49, 161
BmgT120I GGNCC 4 cut(s) 14, 43, 49, 161
BmrFI CCNGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 139
Bse118I RCCGGY 1 cut(s) 55
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 58, 139
BseYI CCCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 15, 148
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 58, 139
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 15, 148
Bsp143I GATC 2 cut(s) 109, 328
BspACI CCGC 3 cut(s) 12, 59, 338
BspANI GGCC 2 cut(s) 15, 148
BspFNI CGCG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 109, 328
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 57, 121
BstF5I GGATG 1 cut(s) 314
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 2 cut(s) 112, 331
BstMBI GATC 2 cut(s) 109, 328
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 12
BsuRI GGCC 2 cut(s) 15, 148
BtsCI GGATG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 57, 121
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 14, 43, 49, 161
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 15, 38, 119, 148, 179
CviKI_1 RGCY 5 cut(s) 15, 38, 119, 148, 179
DpnI GATC 2 cut(s) 111, 330
DpnII GATC 2 cut(s) 109, 328
Eco130I CCWWGG 1 cut(s) 237
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 3 cut(s) 43, 49, 161
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 283
FaiI YATR 8 cut(s) 96, 151, 153, 189, 209, 281, 306, 358
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 15, 148
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 184, 268, 291
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 107, 326, 332
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 283
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 109, 328
LpnPI CCDG 9 cut(s) 32, 59, 65, 69, 133, 165, 177, 339, 345
MalI GATC 2 cut(s) 111, 330
MboI GATC 2 cut(s) 109, 328
MboII GAAGA 4 cut(s) 88, 91, 268, 286
MluCI AATT 4 cut(s) 137, 218, 259, 275
MlyI GAGTC 2 cut(s) 178, 262
MnlI CCTC 1 cut(s) 169
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 12
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 2 cut(s) 109, 328
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 178, 262
PpsI GAGTC 2 cut(s) 178, 262
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 45
PspPI GGNCC 4 cut(s) 14, 43, 49, 161
PspPPI RGGWCCY 1 cut(s) 161
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 109, 328
Sau96I GGNCC 4 cut(s) 14, 43, 49, 161
SchI GAGTC 2 cut(s) 178, 262
ScrFI CCNGG 1 cut(s) 47
SetI ASST 5 cut(s) 40, 54, 166, 243, 346
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 3 cut(s) 43, 49, 161
Sse9I AATT 4 cut(s) 137, 218, 259, 275
SsiI CCGC 3 cut(s) 12, 59, 338
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 237
TaqI TCGA 3 cut(s) 243, 289, 297
TasI AATT 4 cut(s) 137, 218, 259, 275
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 268
VpaK11BI GGWCC 3 cut(s) 43, 49, 161
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.