FvH4_1g07350

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Forward (+)
3894285 .. 3896524
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07350.t2

Sequence Viewer

Length: 1311 bp
ATGTCTCTGTCTTCCGACCTAACCACGAGATACGGCAAAGACGCCCCGCTCCGGCAGTGCCGTGAACATAAGTCTCACAAGCACACGCGTGATGGGAAGAAGAAAAAGGAGAACAAAACCAAGGAGTTGAAGTTGGAGTTGGAGCTGGAGTTGGAGTCGGAGGAGGCTAATAAGTCACTCTACATGTGTGTTCTAGAGCACAGGATAGAGTCGGTGGCTTATGTTGTCCGCACCGTCAAGCTTTCGGATCTCTTATCATCTTCTTCGCCGGTGCCGTTACGGCAAGTGGCTTACGAGGCCGGTTCGCATCTCCCCGGATCTGTGGGTTGCGGAGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTCAAACCCAGCCGCCCTCACGGCCTCGGTGCTCTAAGCGGTGACTCAGTTTGTCATACAAATGTGTACGCCTTGGAAACAAATGCAAATACAAATTCGTCTCACTCAATCAGAAAGCTTGATGCCAATTTACAAGGAGCGAAATATGATGCTCTGACGGTGGAGCTGGGCGGCAAACTGTACGCTCTTTCATATCGGAGGGTCGGCGATCCTCCCTCATTTGAGGTACTTGACCCTAAACTAGGCAGGTGGGAAGGTTTGCCCCAGCCTCCATTTTTCCAAATTGACTCTCCGTATTATGATCATGGCAACTTCGCTTACGCCATCGCCGGCACAAAGATATTCGCCTCCCATCAAGAATGTCCGGTGTTCTGTTTTGACGTGGCTTATCCCGACAGAGAATGGAGGATTGTCTCTACTATGTGCGGCGGTGGCCCCTTTCCATTTTACAACAGAGCTTTAGTTCTGGACCTGCAGGGGGACGATGACAGGAAAATAATGTTTGCCTATAGTTACGAGCCTTGGCGTCTACGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAACCATCACAAAAATCGGTGATGTTAGGATGCCACGGTTGCCTGAGGAATTGGGTCTGCCACAACGCTGTCAATTGTTGCACATTGGAGGTCAGAAAGCCTGTCTTGTTGTCACCGAAATCAGCCCCCCTGATGCAGACGAACCTGATTATGAGCTCGGTACTCATAAGACTCACGGTGCTGTCATACCATTTCAATATGAGCTTGATATGACCAAGGTGGACAAGGACAAGAAGAACTGCTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTTCCCGATCCTGAATCGTTCCAGCTCATTTTAAAATCGTCTTCAGTTGATTGGTCATGGGTGCACAATATGGTTCTGTAA

Protein Analysis

437

Amino Acids

49.05

Weight (kDa)

6.22

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 142 - 349 1.3e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 603
Acc36I ACCTGC 2 cut(s) 603, 846
AccB1I GGYRCC 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 895
AccII CGCG 1 cut(s) 88
AciI CCGC 9 cut(s) 47, 229, 330, 363, 379, 405, 537, 792, 795
AclWI GGATC 6 cut(s) 255, 325, 336, 349, 569, 1232
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 1257
AcyI GRCGYC 3 cut(s) 42, 366, 892
AfaI GTAC 4 cut(s) 434, 548, 594, 1093
AfiI CCNNNNNNNGG 3 cut(s) 51, 608, 844
AflIII ACRYGT 2 cut(s) 86, 183
AgsI TTSAA 2 cut(s) 130, 1127
AjiI CACGTC 1 cut(s) 748
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 9 cut(s) 145, 241, 484, 532, 824, 1087, 1135, 1203, 1255
AluI AGCT 9 cut(s) 145, 241, 484, 532, 824, 1087, 1135, 1203, 1255
Alw21I GWGCWC 4 cut(s) 201, 400, 1089, 1296
Alw26I GTCTC 4 cut(s) 9, 78, 471, 784
Alw44I GTGCAC 1 cut(s) 1292
AlwI GGATC 6 cut(s) 255, 325, 336, 349, 569, 1232
AoxI GGCC 3 cut(s) 297, 388, 799
ApaLI GTGCAC 1 cut(s) 1292
ApeKI GCWGC 1 cut(s) 1200
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 800, 835
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 349, 419, 962, 1036
AsuII TTCGAA 1 cut(s) 1206
AvaII GGWCC 1 cut(s) 835
AxyI CCTNAGG 1 cut(s) 975
BaeGI GKGCMC 1 cut(s) 1296
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 1089
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 3, 1263
Bbv12I GWGCWC 4 cut(s) 201, 400, 1089, 1296
BbvI GCAGC 1 cut(s) 1212
BccI CCATC 5 cut(s) 86, 698, 726, 944, 1231
BceAI ACGGC 5 cut(s) 45, 49, 259, 296, 403
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 4 cut(s) 9, 78, 471, 784
BfaI CTAG 2 cut(s) 194, 608
BfmI CTRYAG 2 cut(s) 839, 874
BfuAI ACCTGC 2 cut(s) 603, 846
BglI GCCNNNNNGGC 2 cut(s) 280, 387
BisI GCNGC 5 cut(s) 364, 379, 538, 793, 1201
BlpI GCTNAGC 1 cut(s) 1174
BlsI GCNGC 5 cut(s) 365, 380, 539, 794, 1202
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 2 cut(s) 800, 835
BmiI GGNNCC 3 cut(s) 273, 343, 802
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 5 cut(s) 316, 478, 505, 951, 1054
BpiI GAAGAC 2 cut(s) 3, 1263
BpmI CTGGAG 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 1174
Bpu14I TTCGAA 1 cut(s) 1206
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 3 cut(s) 42, 366, 892
BsaJI CCNNGG 7 cut(s) 120, 313, 391, 438, 887, 965, 1146
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 6 cut(s) 116, 134, 140, 146, 164, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 608, 844
Bse118I RCCGGY 4 cut(s) 268, 299, 359, 695
Bse21I CCTNAGG 1 cut(s) 975
BseDI CCNNGG 7 cut(s) 120, 313, 391, 438, 887, 965, 1146
BseGI GGATG 2 cut(s) 966, 1223
BseLI CCNNNNNNNGG 3 cut(s) 51, 608, 844
BseMII CTCAG 2 cut(s) 426, 966
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 1296
BseXI GCAGC 1 cut(s) 1212
BseYI CCCAGC 3 cut(s) 374, 532, 630
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 299, 390, 801
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 4 cut(s) 201, 400, 1089, 1296
BsiSI CCGG 7 cut(s) 52, 269, 300, 315, 360, 696, 731
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 3 cut(s) 51, 608, 844
BsmAI GTCTC 4 cut(s) 9, 78, 471, 784
BsmBI CGTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 3 cut(s) 299, 390, 801
Bsp119I TTCGAA 1 cut(s) 1206
Bsp1286I GDGCHC 4 cut(s) 201, 400, 1089, 1296
Bsp143I GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
Bsp1720I GCTNAGC 1 cut(s) 1174
BspACI CCGC 9 cut(s) 47, 229, 330, 363, 379, 405, 537, 792, 795
BspANI GGCC 3 cut(s) 299, 390, 801
BspCNI CTCAG 2 cut(s) 425, 967
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 273, 343, 802
BspMAI CTGCAG 1 cut(s) 843
BspMI ACCTGC 2 cut(s) 603, 846
BspPI GGATC 6 cut(s) 255, 325, 336, 349, 569, 1232
BspT104I TTCGAA 1 cut(s) 1206
BspT107I GGYRCC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 4 cut(s) 268, 299, 359, 695
BssAI RCCGGY 4 cut(s) 268, 299, 359, 695
BssECI CCNNGG 7 cut(s) 120, 313, 391, 438, 887, 965, 1146
BssMI GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
BssNI GRCGYC 3 cut(s) 42, 366, 892
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 4 cut(s) 120, 438, 887, 1146
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 5 cut(s) 235, 526, 546, 969, 1109
Bst6I CTCTTC 2 cut(s) 1200, 1236
BstACI GRCGYC 3 cut(s) 42, 366, 892
BstBI TTCGAA 1 cut(s) 1206
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 4 cut(s) 401, 412, 975, 1174
BstDSI CCRYGG 1 cut(s) 965
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 966, 1223
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 6 cut(s) 250, 320, 344, 577, 670, 1240
BstMAI GTCTC 4 cut(s) 9, 78, 471, 784
BstMBI GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
BstMWI GCNNNNNNNGC 5 cut(s) 280, 296, 387, 798, 970
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 839, 874
BstSLI GKGCMC 1 cut(s) 1296
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 1212
BstV2I GAAGAC 2 cut(s) 3, 1263
BstX2I RGATCY 3 cut(s) 247, 317, 341
BstYI RGATCY 3 cut(s) 247, 317, 341
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 3 cut(s) 299, 390, 801
BtgI CCRYGG 1 cut(s) 965
BtgZI GCGATG 1 cut(s) 676
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 2 cut(s) 966, 1223
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 2 cut(s) 603, 846
Cac8I GCNNGC 1 cut(s) 697
Cfr10I RCCGGY 4 cut(s) 268, 299, 359, 695
Cfr13I GGNCC 2 cut(s) 800, 835
CseI GACGC 3 cut(s) 50, 355, 881
Csp6I GTAC 4 cut(s) 433, 547, 593, 1092
CviAII CATG 4 cut(s) 184, 671, 1189, 1287
CviQI GTAC 4 cut(s) 433, 547, 593, 1092
DdeI CTNAG 4 cut(s) 401, 412, 975, 1174
DpnI GATC 6 cut(s) 249, 319, 343, 576, 669, 1239
DpnII GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
DraI TTTAAA 1 cut(s) 1263
Eam1104I CTCTTC 2 cut(s) 1200, 1236
EarI CTCTTC 2 cut(s) 1200, 1236
Ecl136II GAGCTC 1 cut(s) 1087
Eco130I CCWWGG 4 cut(s) 120, 438, 887, 1146
Eco24I GRGCYC 1 cut(s) 1089
Eco47I GGWCC 1 cut(s) 835
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 1 cut(s) 1257
Eco81I CCTNAGG 1 cut(s) 975
EcoICRI GAGCTC 1 cut(s) 1087
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoT14I CCWWGG 4 cut(s) 120, 438, 887, 1146
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 4 cut(s) 120, 438, 887, 1146
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 4 cut(s) 187, 674, 1192, 1290
FalI AAGNNNNNCTT 4 cut(s) 1020, 1052, 1157, 1189
FaqI GGGAC 1 cut(s) 860
FatI CATG 4 cut(s) 183, 670, 1188, 1286
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 895
Fnu4HI GCNGC 5 cut(s) 364, 379, 538, 793, 1201
FokI GGATG 2 cut(s) 973, 1210
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 5 cut(s) 364, 379, 538, 793, 1201
FspBI CTAG 2 cut(s) 194, 608
GluI GCNGC 5 cut(s) 364, 379, 538, 793, 1201
GsaI CCCAGC 3 cut(s) 378, 536, 634
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 3 cut(s) 299, 390, 801
HapII CCGG 7 cut(s) 52, 269, 300, 315, 360, 696, 731
HgaI GACGC 3 cut(s) 50, 355, 881
Hin1I GRCGYC 3 cut(s) 42, 366, 892
Hin1II CATG 4 cut(s) 187, 674, 1192, 1290
HindIII AAGCTT 2 cut(s) 239, 482
HinfI GANTC 6 cut(s) 155, 209, 410, 653, 1102, 1244
HpaII CCGG 7 cut(s) 52, 269, 300, 315, 360, 696, 731
HphI GGTGA 4 cut(s) 349, 419, 962, 1036
Hpy166II GTNNAC 5 cut(s) 65, 433, 896, 1153, 1294
Hpy188I TCNGA 8 cut(s) 16, 160, 247, 479, 522, 564, 922, 1026
Hpy188III TCNNGA 6 cut(s) 194, 722, 758, 833, 1235, 1241
Hpy8I GTNNAC 5 cut(s) 65, 433, 896, 1153, 1294
HpyAV CCTTC 1 cut(s) 614
HpyCH4III ACNGT 5 cut(s) 235, 526, 546, 969, 1109
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 5 cut(s) 452, 841, 1012, 1067, 1294
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 296, 387, 798, 970
HpyF3I CTNAG 4 cut(s) 401, 412, 975, 1174
HpySE526I ACGT 1 cut(s) 747
Hsp92I GRCGYC 3 cut(s) 42, 366, 892
Hsp92II CATG 4 cut(s) 187, 674, 1192, 1290
KroI GCCGGC 1 cut(s) 695
KroNI GCCGGC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
LmnI GCTCC 4 cut(s) 54, 142, 503, 529
Lsp1109I GCAGC 1 cut(s) 1212
LweI GCATC 5 cut(s) 316, 478, 505, 951, 1054
MaeI CTAG 2 cut(s) 194, 608
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 5 cut(s) 174, 276, 407, 878, 1042
MalI GATC 6 cut(s) 249, 319, 343, 576, 669, 1239
MbiI CCGCTC 1 cut(s) 49
MboI GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
MboII GAAGA 9 cut(s) 3, 109, 112, 252, 255, 1177, 1187, 1223, 1263
MfeI CAATTG 1 cut(s) 1004
MflI RGATCY 3 cut(s) 247, 317, 341
MhlI GDGCHC 4 cut(s) 201, 400, 1089, 1296
MluCI AATT 7 cut(s) 348, 460, 493, 648, 980, 1004, 1184
MluI ACGCGT 1 cut(s) 86
MlyI GAGTC 5 cut(s) 164, 218, 404, 647, 1096
MmeI TCCRAC 5 cut(s) 39, 114, 120, 132, 138
MroNI GCCGGC 1 cut(s) 695
MseI TTAA 1 cut(s) 1262
MslI CAYNNNNRTG 2 cut(s) 87, 426
MspI CCGG 7 cut(s) 52, 269, 300, 315, 360, 696, 731
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 1004
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 5 cut(s) 280, 296, 387, 798, 970
NaeI GCCGGC 1 cut(s) 697
NciI CCSGG 1 cut(s) 315
NdeII GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
NgoMIV GCCGGC 1 cut(s) 695
NlaIII CATG 4 cut(s) 187, 674, 1192, 1290
NlaIV GGNNCC 3 cut(s) 273, 343, 802
NmuCI GTSAC 3 cut(s) 174, 407, 1042
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 1206
OliI CACNNNNGTG 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 603
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 1244
PkrI GCNGC 5 cut(s) 365, 380, 539, 794, 1202
PleI GAGTC 5 cut(s) 163, 217, 404, 647, 1096
PpsI GAGTC 5 cut(s) 163, 217, 404, 647, 1096
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 1089
PspFI CCCAGC 3 cut(s) 374, 532, 630
PspN4I GGNNCC 3 cut(s) 273, 343, 802
PspPI GGNCC 2 cut(s) 800, 835
PstI CTGCAG 1 cut(s) 843
PsuI RGATCY 3 cut(s) 247, 317, 341
RsaI GTAC 4 cut(s) 434, 548, 594, 1093
RsaNI GTAC 4 cut(s) 433, 547, 593, 1092
RseI CAYNNNNRTG 2 cut(s) 87, 426
SacI GAGCTC 1 cut(s) 1089
SaqAI TTAA 1 cut(s) 1262
SatI GCNGC 5 cut(s) 364, 379, 538, 793, 1201
Sau3AI GATC 6 cut(s) 247, 317, 341, 574, 667, 1237
Sau96I GGNCC 2 cut(s) 800, 835
SbfI CCTGCAGG 1 cut(s) 843
SchI GAGTC 5 cut(s) 164, 218, 404, 647, 1096
ScrFI CCNGG 1 cut(s) 315
SdaI CCTGCAGG 1 cut(s) 843
SduI GDGCHC 4 cut(s) 201, 400, 1089, 1296
SfaNI GCATC 5 cut(s) 316, 478, 505, 951, 1054
SfcI CTRYAG 2 cut(s) 839, 874
SfuI TTCGAA 1 cut(s) 1206
SgrAI CRCCGGYG 2 cut(s) 268, 359
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 2 cut(s) 87, 426
Sse8387I CCTGCAGG 1 cut(s) 843
Sse9I AATT 7 cut(s) 348, 460, 493, 648, 980, 1004, 1184
SsiI CCGC 9 cut(s) 47, 229, 330, 363, 379, 405, 537, 792, 795
SspMI CTAG 2 cut(s) 194, 608
SstI GAGCTC 1 cut(s) 1089
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 4 cut(s) 120, 438, 887, 1146
TaaI ACNGT 5 cut(s) 235, 526, 546, 969, 1109
TaiI ACGT 1 cut(s) 750
TaqI TCGA 1 cut(s) 1206
TasI AATT 7 cut(s) 348, 460, 493, 648, 980, 1004, 1184
TauI GCSGC 4 cut(s) 366, 381, 540, 795
TfiI GAWTC 1 cut(s) 1244
Tru1I TTAA 1 cut(s) 1262
Tru9I TTAA 1 cut(s) 1262
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 3 cut(s) 174, 407, 1042
TseI GCWGC 1 cut(s) 1200
Tsp45I GTSAC 3 cut(s) 174, 407, 1042
TspDTI ATGAA 2 cut(s) 546, 1177
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 1 cut(s) 62
VneI GTGCAC 1 cut(s) 1292
VpaK11BI GGWCC 1 cut(s) 835
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 1 cut(s) 460
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 895
XspI CTAG 2 cut(s) 194, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.