FvH4_4g06202

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000213
Physical Location & Seq
Forward (+)
5560351 .. 5562272
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06202.t1

Sequence Viewer

Length: 402 bp
ATGAAGCCGGGGATGCATACTGTACGCGGTGCTGCCATACCATTTCAATATGAGTTTGATATCTCCAAGGTGGACACGGACAGGAAGAATTGTTTCACTGTCCGATTTGAGCATCCTCGCATTTTCGAATACCATTCCGGTCCTGACTGTTTCAGTCCGCCTGAAACACTTGGAAAGTGGCTTCAACCCCAGATAAATTTTACTTCATACTGGAGGATTTTGTATTCTATTGGGGGCATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTTCATCACAAATCCTGTTTCACTCGTGCGTGATCACAATATTAAAGGAAAGCTGGTAGAGCTAGGAATTTCTGTGCAATGCTATAATGCATTTGTTGCACAAGCCATGGGAAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

8.24

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 27, 158
AcsI RAATTY 2 cut(s) 196, 348
AfaI GTAC 2 cut(s) 24, 265
AgsI TTSAA 2 cut(s) 47, 185
AluBI AGCT 2 cut(s) 334, 343
AluI AGCT 2 cut(s) 334, 343
Alw21I GWGCWC 1 cut(s) 278
Alw44I GTGCAC 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 196, 348
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 9
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 278
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 19
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 9
BfaI CTAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 3, 121
BpmI CTGGAG 1 cut(s) 232
Bpu14I TTCGAA 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 8, 66, 387
BsaWI WCCGGW 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 8, 66, 387
BseGI GGATG 2 cut(s) 18, 112
BseMI GCAATG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 2 cut(s) 8, 138
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 27, 158
BspFNI CGCG 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 8, 66, 387
BssMI GATC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 66, 387
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 22, 100, 149
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 18, 112
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 13, 340, 377
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 18, 112
BtsIMutI CAGTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 23, 264
CviAII CATG 2 cut(s) 271, 388
CviJI RGCY 5 cut(s) 7, 181, 334, 343, 386
CviKI_1 RGCY 5 cut(s) 7, 181, 334, 343, 386
CviQI GTAC 2 cut(s) 23, 264
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 66, 387
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 140
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 66, 387
EcoT22I ATGCAT 2 cut(s) 18, 373
ErhI CCWWGG 2 cut(s) 66, 387
FaeI CATG 2 cut(s) 274, 391
FatI CATG 2 cut(s) 270, 387
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 25, 99
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 232
HapII CCGG 2 cut(s) 8, 138
Hin1II CATG 2 cut(s) 274, 391
HpaII CCGG 2 cut(s) 8, 138
Hpy166II GTNNAC 2 cut(s) 73, 276
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 73, 276
HpyCH4III ACNGT 3 cut(s) 22, 100, 149
HpyCH4V TGCA 6 cut(s) 16, 249, 276, 358, 371, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 340, 377
Hsp92II CATG 2 cut(s) 274, 391
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 9 cut(s) 21, 67, 151, 156, 174, 196, 203, 309, 320
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 2 cut(s) 3, 121
MaeI CTAG 1 cut(s) 344
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 3 cut(s) 88, 196, 348
MnlI CCTC 2 cut(s) 126, 207
Mph1103I ATGCAT 2 cut(s) 18, 373
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 1 cut(s) 324
MspI CCGG 2 cut(s) 8, 138
MspR9I CCNGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 13, 340, 377
NciI CCSGG 1 cut(s) 9
NcoI CCATGG 1 cut(s) 387
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 274, 391
NsiI ATGCAT 2 cut(s) 18, 373
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 2 cut(s) 24, 265
RsaNI GTAC 2 cut(s) 23, 264
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 278
SetI ASST 3 cut(s) 72, 336, 345
SfaNI GCATC 2 cut(s) 3, 121
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 140
Sse9I AATT 3 cut(s) 88, 196, 348
SsiI CCGC 2 cut(s) 27, 158
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 2 cut(s) 66, 387
TaaI ACNGT 3 cut(s) 22, 100, 149
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 88, 196, 348
TatI WGTACW 1 cut(s) 263
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 17, 195, 274
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 196, 348
XceI RCATGY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 2 cut(s) 18, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.