Rh2AG054800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
4332447 .. 4333865
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG054800.1

Sequence Viewer

Length: 1419 bp
ATGAATCCTATATCGAACTACAGAAGGAGTAGAGTCCACTTCCCTCTGAGATCAGGAGTTAAGGCTTTCATGTATAAATACACAAACAAGGGGCCGAGGAACCCAAACCAAACATTTCCAATGTCCCCCAAAACCACTCTCAACCTAGCCAACAGATCCAGCGATCGGGAAGACGAACGGCGTCATCGGCTTCGACGCCGCCGTGAACCACCGCATCATAAGGCTGATAAGCACAGGAAGTCTAAGAAGAAGAAGAAGAGAAGTGAGAAGCTGAAGTTGAACGAGGAGGAGGCTAACAAGTCTCTGTACATATGTCACATTGAGCACCACCCTGGAAGGTGGGTCGCTTATGTTGTCCGCGCCATCAACTTGTCCGATTTGTTGTTGTCATCAGAAGACGATGATGGTTTGCAATTACGGCAAGTGGGTTATAAGGCCGGGGATGAACTCCCGGGGTCTGTGGGTTGCGGTGTGTGGGGCTCCCGGATTGTTTTCGCCGCCGGCATGAAACCCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACTGACCCCAACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTTCTTCCTCTGATGGAGGAGGTGGGGGGCAAACTGTATGCACTTTCATATACGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCCCAGCCTCCATTCTTCAAACGTCTTGGTCAGTATAACCGCGGTGGCTTCCTCTCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGGCGAGATGTCCTGTGTTCTGTTTCGATGTAGCTCATCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAACGCGGCCCTTTTCCTTTTGTAAACAAAGCTTTGGTCCTGGACCTGCCGGCGGGTGCTGATGACAAGAAGAAGATAATGTTTGCCTATAGTTTTGGTCGTTGGTATCTAGGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACCCGAATTGGTGATTTTCAGCTGCCAAGGTTGCCTCAGCAATATGAATTTGCACAAAGATGTTATTTTGTCCATATAGGAGGTCAGAAAGCCTGCATTGTTGCCCCCGAATTGGTTAGGCCATATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACAGGGTGTTGCCATACCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTACGAATTCTATACCAACCCGTCCACTTTTCCTGATCCTGATGCGGAAGGTTGCTTTGTGCTATAA

Protein Analysis

472

Amino Acids

54.16

Weight (kDa)

9.37

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 212 - 322 8.8e-12 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 987
AccB1I GGYRCC 2 cut(s) 760, 839
AccI GTMKAC 1 cut(s) 1302
AccII CGCG 3 cut(s) 360, 810, 939
AclWI GGATC 3 cut(s) 150, 710, 1382
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 2 cut(s) 1133, 1358
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 3 cut(s) 181, 196, 761
AdeI CACNNNGTG 1 cut(s) 1259
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 5 cut(s) 165, 748, 749, 985, 1198
AgsI TTSAA 6 cut(s) 280, 578, 644, 787, 1277, 1283
AjnI CCWGG 2 cut(s) 331, 972
AluBI AGCT 4 cut(s) 271, 893, 965, 1108
AluI AGCT 4 cut(s) 271, 893, 965, 1108
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 3 cut(s) 306, 861, 925
AlwI GGATC 3 cut(s) 150, 710, 1382
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 5 cut(s) 92, 435, 517, 940, 1205
ApeKI GCWGC 2 cut(s) 595, 1108
ApoI RAATTY 2 cut(s) 1133, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 954, 986
AspLEI GCGC 2 cut(s) 362, 763
AspS9I GGNCC 5 cut(s) 92, 941, 970, 976, 1220
AsuC2I CCSGG 4 cut(s) 439, 452, 453, 484
AsuHPI GGTGA 3 cut(s) 1078, 1109, 1285
AvaI CYCGRG 1 cut(s) 451
AvaII GGWCC 3 cut(s) 970, 976, 1220
BanI GGYRCC 2 cut(s) 760, 839
BanII GRGCYC 1 cut(s) 482
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 2 cut(s) 177, 402
Bbv12I GWGCWC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 2 cut(s) 607, 1095
BccI CCATC 4 cut(s) 371, 398, 619, 658
BceAI ACGGC 4 cut(s) 186, 194, 434, 504
BciT130I CCWGG 2 cut(s) 333, 974
BcnI CCSGG 4 cut(s) 439, 452, 453, 484
BcoDI GTCTC 3 cut(s) 306, 861, 925
BfaI CTAG 2 cut(s) 146, 1043
BfmI CTRYAG 2 cut(s) 19, 1021
BfoI RGCGCY 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 987
BglI GCCNNNNNGGC 1 cut(s) 939
BisI GCNGC 6 cut(s) 199, 498, 517, 596, 940, 1109
BlsI GCNGC 6 cut(s) 200, 499, 518, 597, 941, 1110
Bme1390I CCNGG 6 cut(s) 333, 439, 452, 453, 484, 974
Bme18I GGWCC 3 cut(s) 970, 976, 1220
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 5 cut(s) 92, 941, 970, 976, 1220
BmiI GGNNCC 5 cut(s) 93, 101, 481, 762, 841
BmrFI CCNGG 6 cut(s) 333, 439, 452, 453, 484, 974
BmsI GCATC 2 cut(s) 223, 1384
BpiI GAAGAC 2 cut(s) 177, 402
Bpu10I CCTNAGC 1 cut(s) 1122
BpuMI CCSGG 4 cut(s) 439, 452, 453, 484
BsaHI GRCGYC 3 cut(s) 181, 196, 761
BsaJI CCNNGG 9 cut(s) 95, 331, 438, 451, 452, 808, 1062, 1112, 1296
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 748, 749, 985, 1198
Bse118I RCCGGY 2 cut(s) 500, 982
Bse1I ACTGG 1 cut(s) 841
BseBI CCWGG 2 cut(s) 333, 974
BseDI CCNNGG 9 cut(s) 95, 331, 438, 451, 452, 808, 1062, 1112, 1296
BseGI GGATG 2 cut(s) 448, 895
BseLI CCNNNNNNNGG 5 cut(s) 165, 748, 749, 985, 1198
BseMII CTCAG 3 cut(s) 38, 872, 1136
BseNI ACTGG 1 cut(s) 841
BseRI GAGGAG 3 cut(s) 299, 302, 683
BseX3I CGGCCG 1 cut(s) 517
BseXI GCAGC 2 cut(s) 607, 1095
BseYI CCCAGC 2 cut(s) 771, 1238
Bsh1236I CGCG 3 cut(s) 360, 810, 939
Bsh1285I CGRYCG 2 cut(s) 166, 520
BshFI GGCC 5 cut(s) 94, 437, 519, 942, 1207
BshNI GGYRCC 2 cut(s) 760, 839
BsiEI CGRYCG 2 cut(s) 166, 520
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 5 cut(s) 438, 452, 484, 501, 983
BslFI GGGAC 3 cut(s) 109, 525, 1255
BslI CCNNNNNNNGG 5 cut(s) 165, 748, 749, 985, 1198
BsmAI GTCTC 3 cut(s) 306, 861, 925
BsmFI GGGAC 3 cut(s) 109, 525, 1255
BsnI GGCC 5 cut(s) 94, 437, 519, 942, 1207
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 327, 482
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
BspANI GGCC 5 cut(s) 94, 437, 519, 942, 1207
BspCNI CTCAG 3 cut(s) 39, 871, 1135
BspFNI CGCG 3 cut(s) 360, 810, 939
BspLI GGNNCC 5 cut(s) 93, 101, 481, 762, 841
BspMI ACCTGC 1 cut(s) 987
BspPI GGATC 3 cut(s) 150, 710, 1382
BspT107I GGYRCC 2 cut(s) 760, 839
BsrFI RCCGGY 2 cut(s) 500, 982
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 1 cut(s) 841
BssAI RCCGGY 2 cut(s) 500, 982
BssECI CCNNGG 9 cut(s) 95, 331, 438, 451, 452, 808, 1062, 1112, 1296
BssMI GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
BssNI GRCGYC 3 cut(s) 181, 196, 761
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 3 cut(s) 1062, 1112, 1296
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 333, 974
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 2 cut(s) 251, 928
BstACI GRCGYC 3 cut(s) 181, 196, 761
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 502, 984, 1180
BstDEI CTNAG 4 cut(s) 47, 243, 858, 1122
BstDSI CCRYGG 1 cut(s) 808
BstF5I GGATG 2 cut(s) 448, 895
BstFNI CGCG 3 cut(s) 360, 810, 939
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 362, 763
BstKTI GATC 6 cut(s) 53, 158, 166, 538, 718, 1390
BstMAI GTCTC 3 cut(s) 306, 861, 925
BstMBI GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
BstMCI CGRYCG 2 cut(s) 166, 520
BstMWI GCNNNNNNNGC 4 cut(s) 187, 418, 939, 1117
BstNI CCWGG 2 cut(s) 333, 974
BstSCI CCNGG 6 cut(s) 331, 437, 450, 451, 482, 972
BstSFI CTRYAG 2 cut(s) 19, 1021
BstUI CGCG 3 cut(s) 360, 810, 939
BstV1I GCAGC 2 cut(s) 607, 1095
BstV2I GAAGAC 2 cut(s) 177, 402
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 517
BsuRI GGCC 5 cut(s) 94, 437, 519, 942, 1207
BtgI CCRYGG 1 cut(s) 808
BtsCI GGATG 2 cut(s) 448, 895
BveI ACCTGC 1 cut(s) 987
Cac8I GCNNGC 3 cut(s) 502, 984, 1180
CaiI CAGNNNCTG 1 cut(s) 836
CfoI GCGC 2 cut(s) 362, 763
Cfr10I RCCGGY 2 cut(s) 500, 982
Cfr13I GGNCC 5 cut(s) 92, 941, 970, 976, 1220
Cfr42I CCGCGG 1 cut(s) 811
Cfr9I CCCGGG 1 cut(s) 451
CseI GACGC 2 cut(s) 170, 204
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 3 cut(s) 70, 505, 1339
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 47, 243, 858, 1122
DinI GGCGCC 1 cut(s) 762
DpnI GATC 6 cut(s) 52, 157, 165, 537, 717, 1389
DpnII GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
DraIII CACNNNGTG 1 cut(s) 1259
EaeI YGGCCR 1 cut(s) 517
EagI CGGCCG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 251, 928
EarI CTCTTC 2 cut(s) 251, 928
EclXI CGGCCG 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 1062, 1112, 1296
Eco24I GRGCYC 1 cut(s) 482
Eco32I GATATC 1 cut(s) 1291
Eco47I GGWCC 3 cut(s) 970, 976, 1220
Eco52I CGGCCG 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 1220
EcoRI GAATTC 1 cut(s) 1358
EcoRII CCWGG 2 cut(s) 331, 972
EcoRV GATATC 1 cut(s) 1291
EcoT14I CCWWGG 3 cut(s) 1062, 1112, 1296
EcoT38I GRGCYC 1 cut(s) 482
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
ErhI CCWWGG 3 cut(s) 1062, 1112, 1296
FaeI CATG 3 cut(s) 73, 508, 1342
FaqI GGGAC 3 cut(s) 109, 525, 1255
FatI CATG 3 cut(s) 69, 504, 1338
FauI CCCGC 1 cut(s) 979
FauNDI CATATG 1 cut(s) 311
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 6 cut(s) 199, 498, 517, 596, 940, 1109
FokI GGATG 2 cut(s) 455, 882
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 6 cut(s) 199, 498, 517, 596, 940, 1109
FspBI CTAG 2 cut(s) 146, 1043
GlaI GCGC 2 cut(s) 361, 762
GluI GCNGC 6 cut(s) 199, 498, 517, 596, 940, 1109
GsaI CCCAGC 2 cut(s) 775, 1242
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 5 cut(s) 94, 437, 519, 942, 1207
HapII CCGG 5 cut(s) 438, 452, 484, 501, 983
HgaI GACGC 2 cut(s) 170, 204
HhaI GCGC 2 cut(s) 362, 763
Hin1I GRCGYC 3 cut(s) 181, 196, 761
Hin1II CATG 3 cut(s) 73, 508, 1342
Hin6I GCGC 2 cut(s) 360, 761
HinP1I GCGC 2 cut(s) 360, 761
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 4 cut(s) 4, 33, 1079, 1243
HpaII CCGG 5 cut(s) 438, 452, 484, 501, 983
HphI GGTGA 3 cut(s) 1078, 1109, 1285
Hpy166II GTNNAC 6 cut(s) 37, 206, 568, 958, 1303, 1377
Hpy188I TCNGA 5 cut(s) 48, 376, 394, 663, 1173
Hpy188III TCNNGA 8 cut(s) 54, 167, 542, 602, 899, 1076, 1385, 1391
Hpy8I GTNNAC 6 cut(s) 37, 206, 568, 958, 1303, 1377
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 18, 330, 537, 1394
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 5 cut(s) 412, 692, 830, 1139, 1182
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 418, 939, 1117
HpyF3I CTNAG 4 cut(s) 47, 243, 858, 1122
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 3 cut(s) 181, 196, 761
Hsp92II CATG 3 cut(s) 73, 508, 1342
HspAI GCGC 2 cut(s) 360, 761
KasI GGCGCC 1 cut(s) 760
KroI GCCGGC 2 cut(s) 500, 982
KroNI GCCGGC 2 cut(s) 502, 984
KspI CCGCGG 1 cut(s) 811
Kzo9I GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 607, 1095
LweI GCATC 2 cut(s) 223, 1384
MaeI CTAG 2 cut(s) 146, 1043
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 2 cut(s) 314, 832
MalI GATC 6 cut(s) 52, 157, 165, 537, 717, 1389
MboI GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 327, 482
MluCI AATT 9 cut(s) 413, 615, 1092, 1133, 1196, 1277, 1318, 1334, 1358
Mly113I GGCGCC 1 cut(s) 761
MlyI GAGTC 2 cut(s) 42, 1237
MroNI GCCGGC 2 cut(s) 500, 982
MseI TTAA 2 cut(s) 60, 1230
MslI CAYNNNNRTG 3 cut(s) 561, 845, 1144
MspA1I CMGCKG 2 cut(s) 810, 1108
MspI CCGG 5 cut(s) 438, 452, 484, 501, 983
MspR9I CCNGG 6 cut(s) 333, 439, 452, 453, 484, 974
MvaI CCWGG 2 cut(s) 333, 974
MvnI CGCG 3 cut(s) 360, 810, 939
MwoI GCNNNNNNNGC 4 cut(s) 187, 418, 939, 1117
NaeI GCCGGC 2 cut(s) 502, 984
NarI GGCGCC 1 cut(s) 761
NciI CCSGG 4 cut(s) 439, 452, 453, 484
NdeI CATATG 1 cut(s) 311
NdeII GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
NgoMIV GCCGGC 2 cut(s) 500, 982
NlaIII CATG 3 cut(s) 73, 508, 1342
NlaIV GGNNCC 5 cut(s) 93, 101, 481, 762, 841
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 199, 1308
PdiI GCCGGC 2 cut(s) 502, 984
PfeI GAWTC 2 cut(s) 4, 1079
PfoI TCCNGGA 2 cut(s) 482, 972
PkrI GCNGC 6 cut(s) 200, 499, 518, 597, 941, 1110
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 2 cut(s) 41, 1237
PluTI GGCGCC 1 cut(s) 764
PpsI GAGTC 2 cut(s) 41, 1237
PpuMI RGGWCCY 1 cut(s) 1220
PsiI TTATAA 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 1220
Psp6I CCWGG 2 cut(s) 331, 972
PspFI CCCAGC 2 cut(s) 771, 1238
PspGI CCWGG 2 cut(s) 331, 972
PspN4I GGNNCC 5 cut(s) 93, 101, 481, 762, 841
PspPI GGNCC 5 cut(s) 92, 941, 970, 976, 1220
PspPPI RGGWCCY 1 cut(s) 1220
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 155
PvuI CGATCG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 3 cut(s) 561, 845, 1144
SacII CCGCGG 1 cut(s) 811
SalI GTCGAC 1 cut(s) 1301
SaqAI TTAA 2 cut(s) 60, 1230
SatI GCNGC 6 cut(s) 199, 498, 517, 596, 940, 1109
Sau3AI GATC 6 cut(s) 50, 155, 163, 535, 715, 1387
Sau96I GGNCC 5 cut(s) 92, 941, 970, 976, 1220
SchI GAGTC 2 cut(s) 42, 1237
ScrFI CCNGG 6 cut(s) 333, 439, 452, 453, 484, 974
SduI GDGCHC 2 cut(s) 327, 482
SfaNI GCATC 2 cut(s) 223, 1384
SfcI CTRYAG 2 cut(s) 19, 1021
SfoI GGCGCC 1 cut(s) 762
Sfr303I CCGCGG 1 cut(s) 811
SgrBI CCGCGG 1 cut(s) 811
SinI GGWCC 3 cut(s) 970, 976, 1220
SmaI CCCGGG 1 cut(s) 453
SmiMI CAYNNNNRTG 3 cut(s) 561, 845, 1144
Sse9I AATT 9 cut(s) 413, 615, 1092, 1133, 1196, 1277, 1318, 1334, 1358
SspDI GGCGCC 1 cut(s) 760
SspMI CTAG 2 cut(s) 146, 1043
StyD4I CCNGG 6 cut(s) 331, 437, 450, 451, 482, 972
StyI CCWWGG 3 cut(s) 1062, 1112, 1296
TaaI ACNGT 1 cut(s) 687
TaiI ACGT 1 cut(s) 793
TaqI TCGA 5 cut(s) 14, 193, 738, 885, 1302
TasI AATT 9 cut(s) 413, 615, 1092, 1133, 1196, 1277, 1318, 1334, 1358
TatI WGTACW 1 cut(s) 306
TauI GCSGC 4 cut(s) 201, 500, 519, 942
TfiI GAWTC 2 cut(s) 4, 1079
Tru1I TTAA 2 cut(s) 60, 1230
Tru9I TTAA 2 cut(s) 60, 1230
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 595, 1108
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 8 cut(s) 17, 58, 459, 519, 521, 687, 1146, 1327
TspMI CCCGGG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 970, 976, 1220
XapI RAATTY 2 cut(s) 1133, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 906
XmaI CCCGGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 1302
XspI CTAG 2 cut(s) 146, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.