Rh5CG153500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000213
Physical Location & Seq
Forward (+)
14248697 .. 14250086
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG153500.1

Sequence Viewer

Length: 456 bp
ATGGAGAAGAAGATGAAGAAGAGGAAGACGGTTGGGATGAAGTTGGAGGAGGAGGAGGCTAACAAGTCCATGTACATATGTTCCCACGATTTCAACGTCGGACAACAGATGTCTTATGATGTCTGCGCCATTAAGTTGTCCGATTTGTTATCGTCGTCCTCCTCTTTCGATCATCCGTTGCAATTACAGCAAGTGGCTTACAAGACAGGCTCGGATCTCCCCGGTTCTGTGGGGTGTGGTGTTTGGGGCTCCCAAATTGTTTTCGTCGGCGGCTTGAAACCCAGCGTCCCTTACGGCATAGGGGCATCCAGATTAGGCCCAATTGTTTGGCACACGGATGTTTATTGCTTCGAAACACAGCAGCAGCAGCAGCCAGAGGACGAGGACAATTTAATCAGGAAGATGGATGCTAATTTTAGTCTACTGCAAGCCAAATTTAGCCCTTACATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

5.89

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 421
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 434
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 94, 277
AlwI GGATC 1 cut(s) 222
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 4 cut(s) 361, 364, 367, 370
ApoI RAATTY 1 cut(s) 434
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 222
AsuII TTCGAA 1 cut(s) 351
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 373, 376, 379, 382
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 222
BisI GCNGC 5 cut(s) 271, 362, 365, 368, 371
BlsI GCNGC 5 cut(s) 272, 363, 366, 369, 372
Bme1390I CCNGG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 314, 397
BpiI GAAGAC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 5 cut(s) 42, 172, 305, 343, 412
BseRI GAGGAG 4 cut(s) 62, 65, 68, 151
BseXI GCAGC 4 cut(s) 373, 376, 379, 382
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 169, 214
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 169, 214
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 429
BstF5I GGATG 5 cut(s) 42, 172, 305, 343, 412
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 172, 217
BstMBI GATC 2 cut(s) 169, 214
BstMWI GCNNNNNNNGC 3 cut(s) 187, 367, 370
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 373, 376, 379, 382
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 327
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 5 cut(s) 42, 172, 305, 343, 412
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 70
CviJI RGCY 9 cut(s) 59, 197, 210, 249, 273, 318, 373, 431, 441
CviKI_1 RGCY 9 cut(s) 59, 197, 210, 249, 273, 318, 373, 431, 441
CviQI GTAC 1 cut(s) 73
DpnI GATC 2 cut(s) 171, 216
DpnII GATC 2 cut(s) 169, 214
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 1 cut(s) 73
FaiI YATR 5 cut(s) 71, 77, 79, 117, 299
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 77
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 5 cut(s) 271, 362, 365, 368, 371
FokI GGATG 5 cut(s) 49, 159, 292, 350, 419
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 271, 362, 365, 368, 371
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 271, 362, 365, 368, 371
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 3 cut(s) 101, 142, 214
Hpy188III TCNNGA 2 cut(s) 309, 397
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 3 cut(s) 101, 157, 269
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 181, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 367, 370
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 169, 214
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 6 cut(s) 192, 235, 295, 322, 382, 387
Lsp1109I GCAGC 4 cut(s) 373, 376, 379, 382
LweI GCATC 2 cut(s) 314, 397
MaeII ACGT 1 cut(s) 96
MalI GATC 2 cut(s) 171, 216
MboI GATC 2 cut(s) 169, 214
MboII GAAGA 6 cut(s) 19, 22, 28, 31, 37, 412
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 6 cut(s) 182, 255, 321, 388, 412, 434
MmeI TCCRAC 2 cut(s) 24, 79
MnlI CCTC 9 cut(s) 15, 40, 43, 46, 49, 169, 172, 370, 376
MseI TTAA 2 cut(s) 132, 392
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 187, 367, 370
NciI CCSGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 169, 214
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 250
NspV TTCGAA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PkrI GCNGC 5 cut(s) 272, 363, 366, 369, 372
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 132, 392
SatI GCNGC 5 cut(s) 271, 362, 365, 368, 371
Sau3AI GATC 2 cut(s) 169, 214
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 251
SetI ASST 1 cut(s) 99
SfaNI GCATC 2 cut(s) 314, 397
SfuI TTCGAA 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 6 cut(s) 182, 255, 321, 388, 412, 434
SsiI CCGC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 168, 351
TasI AATT 6 cut(s) 182, 255, 321, 388, 412, 434
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 132, 392
Tru9I TTAA 2 cut(s) 132, 392
TseI GCWGC 4 cut(s) 361, 364, 367, 370
TspDTI ATGAA 2 cut(s) 29, 53
TspGWI ACGGA 2 cut(s) 165, 350
XapI RAATTY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.