Rh2AG062000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
5087339 .. 5088704
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG062000.1

Sequence Viewer

Length: 741 bp
ATGTGCCGGGGTGGCTCTTTTCCCTTCGATAACAAGGTAGCATTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAACTATCACAAAAATCGGTGATCTGAGGATGCCAGTGTTGCCTGATGAATTCGGTTTGCCACAACGCTGTGAATTTTTGCACATAGGAGGCCAGAAAGCCTGCCTTGTTATCACCGAAATCGGCTTCCGTGATGAAGACGAGCCTGATTATGAGCTCGGTACTCATAAGAGACACGGTGCAGTCATACCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAACACTCCAATTTATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCTACCTGAACCTGAAACGGTTGGTGGATGGGAAGTCTTAAGGCTTTTAAAATGGATTGTTGGTCGTATTGATATTCCTGATCAACTGACTGGAGTAGACTGGCTTATAGAAGAGGGACTAGCACAAGCAGTCAACAGTGGGGTGCCTAGGTTTCCTGATGCCTTCTGGCCTGCAGCGCAGAGTGACTTGTTACATCATGGGATGTGTATGACACTAGCTATTCTGAGAAGTGTTGCAGGGAAGGTAATTTTGTTTGGTCTCAAGCTTGCAGGAAAAGCAATTTTTGTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.83

Weight (kDa)

5.27

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 543
AcsI RAATTY 2 cut(s) 197, 221
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 484
AgsI TTSAA 2 cut(s) 344, 350
AjnI CCWGG 1 cut(s) 48
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 4 cut(s) 304, 420, 665, 712
AluI AGCT 4 cut(s) 304, 420, 665, 712
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 313, 710
AoxI GGCC 2 cut(s) 238, 614
ApeKI GCWGC 2 cut(s) 417, 620
ApoI RAATTY 2 cut(s) 197, 221
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 179, 253, 352
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 593
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 429, 632
BccI CCATC 2 cut(s) 448, 468
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 313, 710
BfaI CTAG 3 cut(s) 566, 594, 662
BfmI CTRYAG 3 cut(s) 56, 91, 618
BfrI CTTAAG 1 cut(s) 484
BfuAI ACCTGC 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 2 cut(s) 418, 621
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 2 cut(s) 419, 622
Bme1390I CCNGG 2 cut(s) 8, 50
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 2 cut(s) 8, 50
BmsI GCATC 2 cut(s) 168, 595
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 4 cut(s) 7, 104, 363, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 182, 541, 551
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 4 cut(s) 7, 104, 363, 593
BseGI GGATG 4 cut(s) 183, 440, 479, 654
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 164, 662
BseNI ACTGG 3 cut(s) 182, 541, 551
BseXI GCAGC 2 cut(s) 429, 632
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 2 cut(s) 240, 616
BshNI GGYRCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 77, 576
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 2 cut(s) 313, 710
BsmFI GGGAC 2 cut(s) 77, 576
BsnI GGCC 2 cut(s) 240, 616
Bso31I GGTCTC 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 169, 526
BspANI GGCC 2 cut(s) 240, 616
BspCNI CTCAG 2 cut(s) 165, 663
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 591
BspMAI CTGCAG 2 cut(s) 60, 622
BspMI ACCTGC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 710
BsrI ACTGG 3 cut(s) 182, 541, 551
BssECI CCNNGG 4 cut(s) 7, 104, 363, 593
BssMI GATC 2 cut(s) 169, 526
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 3 cut(s) 104, 363, 593
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 95, 326, 466, 584
Bst6I CTCTTC 2 cut(s) 417, 552
BstACI GRCGYC 1 cut(s) 109
BstAFI CTTAAG 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 250, 618, 714
BstDEI CTNAG 2 cut(s) 173, 671
BstF5I GGATG 4 cut(s) 183, 440, 479, 654
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 2 cut(s) 172, 529
BstMAI GTCTC 2 cut(s) 313, 710
BstMBI GATC 2 cut(s) 169, 526
BstMWI GCNNNNNNNGC 4 cut(s) 12, 187, 622, 722
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 6, 48
BstSFI CTRYAG 3 cut(s) 56, 91, 618
BstV1I GCAGC 2 cut(s) 429, 632
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 240, 616
BtsCI GGATG 4 cut(s) 183, 440, 479, 654
BtsIMutI CAGTG 2 cut(s) 189, 589
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 250, 618, 714
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 309
CviAII CATG 2 cut(s) 98, 644
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 173, 671
DpnI GATC 2 cut(s) 171, 528
DpnII GATC 2 cut(s) 169, 526
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 417, 552
EarI CTCTTC 2 cut(s) 417, 552
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 3 cut(s) 104, 363, 593
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 710
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 3 cut(s) 104, 363, 593
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 3 cut(s) 104, 363, 593
FaeI CATG 2 cut(s) 101, 647
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 77, 576
FatI CATG 2 cut(s) 97, 643
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 418, 621
FokI GGATG 4 cut(s) 190, 427, 486, 661
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 418, 621
FspBI CTAG 3 cut(s) 566, 594, 662
GlaI GCGC 1 cut(s) 624
GluI GCNGC 2 cut(s) 418, 621
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 2 cut(s) 240, 616
HapII CCGG 1 cut(s) 7
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 101, 647
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 710
HpaII CCGG 1 cut(s) 7
HphI GGTGA 3 cut(s) 179, 253, 352
Hpy166II GTNNAC 3 cut(s) 370, 544, 580
Hpy188I TCNGA 3 cut(s) 139, 174, 672
Hpy188III TCNNGA 3 cut(s) 98, 524, 602
Hpy8I GTNNAC 3 cut(s) 370, 544, 580
HpyAV CCTTC 3 cut(s) 34, 619, 682
HpyCH4III ACNGT 4 cut(s) 95, 326, 466, 584
HpyCH4V TGCA 6 cut(s) 58, 229, 329, 620, 683, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 187, 622, 722
HpyF3I CTNAG 2 cut(s) 173, 671
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 101, 647
HspAI GCGC 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 169, 526
Lsp1109I GCAGC 2 cut(s) 429, 632
LweI GCATC 2 cut(s) 168, 595
MaeI CTAG 3 cut(s) 566, 594, 662
MaeIII GTNAC 2 cut(s) 629, 636
MalI GATC 2 cut(s) 171, 528
MboI GATC 2 cut(s) 169, 526
MboII GAAGA 3 cut(s) 296, 404, 569
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 7 cut(s) 197, 221, 344, 385, 401, 693, 726
MnlI CCTC 4 cut(s) 168, 230, 420, 553
MseI TTAA 3 cut(s) 392, 485, 494
MslI CAYNNNNRTG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 484
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 8, 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 12, 187, 622, 722
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 169, 526
NlaIII CATG 2 cut(s) 101, 647
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 629
NspV TTCGAA 1 cut(s) 423
OliI CACNNNNGTG 1 cut(s) 365
PagI TCATGA 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 2 cut(s) 419, 622
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 1 cut(s) 52
PstI CTGCAG 2 cut(s) 60, 622
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 365
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 392, 485, 494
SatI GCNGC 2 cut(s) 418, 621
Sau3AI GATC 2 cut(s) 169, 526
Sau96I GGNCC 1 cut(s) 52
SbfI CCTGCAGG 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 8, 50
SdaI CCTGCAGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 2 cut(s) 168, 595
SfcI CTRYAG 3 cut(s) 56, 91, 618
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 484, 707
SmoI CTYRAG 2 cut(s) 484, 707
Sse8387I CCTGCAGG 1 cut(s) 60
Sse9I AATT 7 cut(s) 197, 221, 344, 385, 401, 693, 726
SspMI CTAG 3 cut(s) 566, 594, 662
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 6, 48
StyI CCWWGG 3 cut(s) 104, 363, 593
TaaI ACNGT 4 cut(s) 95, 326, 466, 584
TaqI TCGA 2 cut(s) 27, 423
TasI AATT 7 cut(s) 197, 221, 344, 385, 401, 693, 726
Tru1I TTAA 3 cut(s) 392, 485, 494
Tru9I TTAA 3 cut(s) 392, 485, 494
TscAI CASTG 2 cut(s) 189, 589
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 417, 620
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 210, 297
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 189, 589
Vha464I CTTAAG 1 cut(s) 484
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 2 cut(s) 197, 221
XmaJI CCTAGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 3 cut(s) 566, 594, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.