Rmu_sc0008896.1_g000004

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008896.1
OG0000213
Physical Location & Seq
Reverse (-)
27757 .. 28731
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008896.1_g000004.1.cds

Sequence Viewer

Length: 975 bp
atggaagtcatttttttattttttcccgattttgttggttgtgctgttttcggctcccaaatcattttcgccggtggcgtgagccccagcttgggttccggtgacagatttccgccgataagttctgaactctggaatagagatgttcatgccttcgaggttcatgacaatgttttcaggaagatggatgcgactttacagagagggaaattttcccctatgatggtggagctgggcgggaaagtgtacgctctttcttatgagctgatccctgatcctccatcattcgaggtatttgaccctaaaataggcctgtggaagggtttgccccaacctccatttttccaacccggatctcgatatgactctcctgcttccttcttttatgcaattgccggcaccaagatgtttgtgtcccatgacaaatgtccggtgttctgctttgatgtggcacacccagacagagaatggagactagtccctactatgtgtggcggcggcccttttccttttatgggcaacgcctttgtcctggacctgccggagcaccatgatgacaagaagaagatcatgtttgcttatattcatgatacgtggcggctgggagtttatcttttttccttggaggaaggtcaggaatccattgcaccgattggttatttgaagctgccatggtggccttatgaattgggttcggcagcaggctgtgattttgtccacataggaggtcagaaagcctgcattcttatcaccgaattcaaccttccttatggtgaaggacctgactataagcccgggacttataagaagcggggggttgcgataccatttcaatttcaagttgatatcactaaggtggacagggacgagaagaattgtttcactctccaattcatgactcctcgcaccttcgaattccagaccaacccatccacttttcctctaccttttacggttggctgctttctgctgtaa

Protein Analysis

324

Amino Acids

36.62

Weight (kDa)

5.5

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
Acc36I ACCTGC 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 6 cut(s) 113, 237, 495, 498, 598, 811
AclWI GGATC 3 cut(s) 262, 269, 361
AcsI RAATTY 3 cut(s) 209, 755, 914
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 6 cut(s) 91, 92, 223, 308, 319, 515
AgsI TTSAA 4 cut(s) 664, 760, 833, 839
AhlI ACTAGT 1 cut(s) 475
AjnI CCWGG 1 cut(s) 531
AleI CACNNNNGTG 1 cut(s) 854
AluBI AGCT 4 cut(s) 90, 232, 265, 667
AluI AGCT 4 cut(s) 90, 232, 265, 667
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 3 cut(s) 262, 269, 361
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 3 cut(s) 310, 499, 677
ApeKI GCWGC 3 cut(s) 667, 698, 960
ApoI RAATTY 3 cut(s) 209, 755, 914
Asp700I GAANNNNTTC 1 cut(s) 878
AspS9I GGNCC 3 cut(s) 500, 535, 779
AsuC2I CCSGG 3 cut(s) 351, 795, 796
AsuHPI GGTGA 3 cut(s) 113, 742, 785
AsuII TTCGAA 1 cut(s) 912
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 2 cut(s) 535, 779
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 654, 710, 947
BccI CCATC 4 cut(s) 178, 217, 289, 937
BciT130I CCWGG 1 cut(s) 533
BcnI CCSGG 3 cut(s) 351, 795, 796
BcoDI GTCTC 1 cut(s) 466
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 676
BisI GCNGC 6 cut(s) 496, 499, 599, 668, 699, 961
BlsI GCNGC 6 cut(s) 497, 500, 600, 669, 700, 962
Bme1390I CCNGG 4 cut(s) 351, 533, 795, 796
Bme18I GGWCC 2 cut(s) 535, 779
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 3 cut(s) 500, 535, 779
BmiI GGNNCC 3 cut(s) 55, 97, 400
BmrFI CCNGG 4 cut(s) 351, 533, 795, 796
BmsI GCATC 1 cut(s) 178
BoxI GACNNNNGTC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 912
BpuMI CCSGG 3 cut(s) 351, 795, 796
BsaAI YACGTR 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 621, 671, 794
BsaWI WCCGGW 2 cut(s) 98, 430
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 92, 223, 308, 319, 515
Bse118I RCCGGY 2 cut(s) 71, 395
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 3 cut(s) 621, 671, 794
BseGI GGATG 2 cut(s) 193, 929
BseLI CCNNNNNNNGG 6 cut(s) 91, 92, 223, 308, 319, 515
BseMI GCAATG 1 cut(s) 642
BseRI GAGGAG 1 cut(s) 891
BseXI GCAGC 3 cut(s) 654, 710, 947
BseYI CCCAGC 3 cut(s) 86, 232, 601
BshFI GGCC 3 cut(s) 312, 501, 679
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 7 cut(s) 72, 99, 351, 396, 431, 542, 795
BslFI GGGAC 4 cut(s) 400, 464, 811, 878
BslI CCNNNNNNNGG 6 cut(s) 91, 92, 223, 308, 319, 515
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 4 cut(s) 400, 464, 811, 878
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 3 cut(s) 312, 501, 679
BsoBI CYCGRG 1 cut(s) 794
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 86, 549
Bsp143I GATC 4 cut(s) 267, 274, 353, 567
Bsp19I CCATGG 1 cut(s) 671
BspACI CCGC 6 cut(s) 113, 237, 495, 498, 598, 811
BspANI GGCC 3 cut(s) 312, 501, 679
BspHI TCATGA 3 cut(s) 163, 586, 894
BspLI GGNNCC 3 cut(s) 55, 97, 400
BspMI ACCTGC 1 cut(s) 546
BspPI GGATC 3 cut(s) 262, 269, 361
BspT104I TTCGAA 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 642
BsrFI RCCGGY 2 cut(s) 71, 395
BssAI RCCGGY 2 cut(s) 71, 395
BssECI CCNNGG 3 cut(s) 621, 671, 794
BssMI GATC 4 cut(s) 267, 274, 353, 567
BssT1I CCWWGG 2 cut(s) 621, 671
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 955
BstBAI YACGTR 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 3 cut(s) 397, 703, 739
BstDEI CTNAG 1 cut(s) 852
BstDSI CCRYGG 1 cut(s) 671
BstENI CCTNNNNNAGG 2 cut(s) 306, 317
BstF5I GGATG 2 cut(s) 193, 929
BstKTI GATC 4 cut(s) 270, 277, 356, 570
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 4 cut(s) 267, 274, 353, 567
BstMWI GCNNNNNNNGC 1 cut(s) 676
BstNI CCWGG 1 cut(s) 533
BstPAI GACNNNNGTC 1 cut(s) 426
BstSCI CCNGG 4 cut(s) 349, 531, 793, 794
BstV1I GCAGC 3 cut(s) 654, 710, 947
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 3 cut(s) 312, 501, 679
BtgI CCRYGG 1 cut(s) 671
BtsCI GGATG 2 cut(s) 193, 929
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 3 cut(s) 397, 703, 739
CciI TCATGA 3 cut(s) 163, 586, 894
Cfr10I RCCGGY 2 cut(s) 71, 395
Cfr13I GGNCC 3 cut(s) 500, 535, 779
Cfr9I CCCGGG 1 cut(s) 794
Csp6I GTAC 1 cut(s) 247
CviAII CATG 8 cut(s) 149, 164, 419, 551, 571, 587, 672, 895
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 852
DpnI GATC 4 cut(s) 269, 276, 355, 569
DpnII GATC 4 cut(s) 267, 274, 353, 567
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 621, 671
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 2 cut(s) 535, 779
Eco88I CYCGRG 1 cut(s) 794
EcoNI CCTNNNNNAGG 2 cut(s) 306, 317
EcoO109I RGGNCCY 1 cut(s) 779
EcoRI GAATTC 2 cut(s) 755, 914
EcoRII CCWGG 1 cut(s) 531
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 621, 671
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 2 cut(s) 621, 671
FaeI CATG 8 cut(s) 152, 167, 422, 554, 574, 590, 675, 898
FaqI GGGAC 4 cut(s) 400, 464, 811, 878
FatI CATG 8 cut(s) 148, 163, 418, 550, 570, 586, 671, 894
FauI CCCGC 2 cut(s) 230, 804
Fnu4HI GCNGC 6 cut(s) 496, 499, 599, 668, 699, 961
FokI GGATG 2 cut(s) 200, 916
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 6 cut(s) 496, 499, 599, 668, 699, 961
FspBI CTAG 1 cut(s) 476
GluI GCNGC 6 cut(s) 496, 499, 599, 668, 699, 961
GsaI CCCAGC 3 cut(s) 90, 236, 605
HaeIII GGCC 3 cut(s) 312, 501, 679
HapII CCGG 7 cut(s) 72, 99, 351, 396, 431, 542, 795
Hin1II CATG 8 cut(s) 152, 167, 422, 554, 574, 590, 675, 898
HinfI GANTC 3 cut(s) 365, 638, 898
HpaII CCGG 7 cut(s) 72, 99, 351, 396, 431, 542, 795
HphI GGTGA 3 cut(s) 113, 742, 785
Hpy166II GTNNAC 3 cut(s) 247, 718, 859
Hpy188I TCNGA 2 cut(s) 127, 732
Hpy188III TCNNGA 9 cut(s) 26, 133, 164, 178, 357, 587, 635, 895, 919
Hpy8I GTNNAC 3 cut(s) 247, 718, 859
HpyAV CCTTC 7 cut(s) 163, 313, 388, 623, 770, 773, 919
HpyCH4III ACNGT 1 cut(s) 955
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 3 cut(s) 389, 647, 741
HpyF10VI GCNNNNNNNGC 1 cut(s) 676
HpyF3I CTNAG 1 cut(s) 852
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 8 cut(s) 152, 167, 422, 554, 574, 590, 675, 898
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 4 cut(s) 267, 274, 353, 567
LmnI GCTCC 3 cut(s) 59, 229, 544
Lsp1109I GCAGC 3 cut(s) 654, 710, 947
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 101
MalI GATC 4 cut(s) 269, 276, 355, 569
MboI GATC 4 cut(s) 267, 274, 353, 567
MboII GAAGA 4 cut(s) 193, 574, 577, 883
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 86, 549
MluCI AATT 8 cut(s) 209, 390, 686, 755, 833, 874, 890, 914
MlyI GAGTC 2 cut(s) 359, 892
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 9 cut(s) 151, 197, 283, 288, 345, 619, 719, 912, 951
MroNI GCCGGC 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 878
MslI CAYNNNNRTG 4 cut(s) 168, 404, 552, 854
MspI CCGG 7 cut(s) 72, 99, 351, 396, 431, 542, 795
MspR9I CCNGG 4 cut(s) 351, 533, 795, 796
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 1 cut(s) 533
MwoI GCNNNNNNNGC 1 cut(s) 676
NaeI GCCGGC 1 cut(s) 397
NciI CCSGG 3 cut(s) 351, 795, 796
NcoI CCATGG 1 cut(s) 671
NdeII GATC 4 cut(s) 267, 274, 353, 567
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 8 cut(s) 152, 167, 422, 554, 574, 590, 675, 898
NlaIV GGNNCC 3 cut(s) 55, 97, 400
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 912
OliI CACNNNNGTG 1 cut(s) 854
PagI TCATGA 3 cut(s) 163, 586, 894
PceI AGGCCT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 6 cut(s) 497, 500, 600, 669, 700, 962
PleI GAGTC 2 cut(s) 359, 892
PpsI GAGTC 2 cut(s) 359, 892
Ppu21I YACGTR 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 779
PshAI GACNNNNGTC 1 cut(s) 426
PsiI TTATAA 1 cut(s) 804
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 531
PspFI CCCAGC 3 cut(s) 86, 232, 601
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 3 cut(s) 55, 97, 400
PspPI GGNCC 3 cut(s) 500, 535, 779
PspPPI RGGWCCY 1 cut(s) 779
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 4 cut(s) 168, 404, 552, 854
SatI GCNGC 6 cut(s) 496, 499, 599, 668, 699, 961
Sau3AI GATC 4 cut(s) 267, 274, 353, 567
Sau96I GGNCC 3 cut(s) 500, 535, 779
SchI GAGTC 2 cut(s) 359, 892
ScrFI CCNGG 4 cut(s) 351, 533, 795, 796
SduI GDGCHC 2 cut(s) 86, 549
SfaNI GCATC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 912
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 535, 779
SmaI CCCGGG 1 cut(s) 796
SmiMI CAYNNNNRTG 4 cut(s) 168, 404, 552, 854
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 8 cut(s) 209, 390, 686, 755, 833, 874, 890, 914
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 6 cut(s) 113, 237, 495, 498, 598, 811
SspMI CTAG 1 cut(s) 476
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 349, 531, 793, 794
StyI CCWWGG 2 cut(s) 621, 671
TaaI ACNGT 1 cut(s) 955
TaiI ACGT 1 cut(s) 596
TaqI TCGA 4 cut(s) 156, 288, 358, 912
TasI AATT 8 cut(s) 209, 390, 686, 755, 833, 874, 890, 914
TauI GCSGC 3 cut(s) 498, 501, 601
TfiI GAWTC 1 cut(s) 638
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 667, 698, 960
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 5 cut(s) 137, 152, 575, 699, 883
TspMI CCCGGG 1 cut(s) 794
VpaK11BI GGWCC 2 cut(s) 535, 779
XagI CCTNNNNNAGG 2 cut(s) 306, 317
XapI RAATTY 3 cut(s) 209, 755, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.