Rh2AG055700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
4388644 .. 4394259
5616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG055700.1

Sequence Viewer

Length: 1272 bp
ATGTTGTCCTCACCATCAAACTGTCAGATTTGTTATCATCTTCGGCGGTGGGGGACGATCCATTGCCATTGCGGCAAATGGCTTATGAGGCCAGTTCGCATCTCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACGGCGGCGTGACACCCAACTCCCCTCACGGCTTCAGGAATATAGGTCCCGACTCAGTTGGCATACAAATGTTTATGCCTTTGAAACACACACAAATGAGATCAGAAAGCTTGATGCCAATTTACAAAGAGGGAAACTTGACCCTCCAACGGTGGAACTGGGCGGCAAACTGTACGCTCTTTCCTATAGTCTGGTCAGTCATCCTCCCTCATTTGAGGTATTTGACCCTAAAATAGGCAATTGGGAAGGTTTGCCCCAGCCTCCATTTTTTCGAGTTGGCTCTCCATATTATGAACATGGCAACTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCCCATGAAGAATGTCCTATGTTCTGCTTTGACGTCGCCCATCCAGACAGAGATTGGAGACTGGTCTCTACTATGTGTCGGGGTGGCCCTTTCCCCTTTGATAACAAAGTTGCATTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAATTATCACAAAAATCGGTGATCTGAGGATGCCAGTGTTGCCTGATGAATTGGGTTTGCCACAACGCTGTGAATTTTTGCACATTGGAGGTCAGAAAGCGTGCCTTGTTGTCACCGAAATTGGGGTCCGTGATGAAGACGCTCCTGCTTATAATGAGCTCGGTACTCATAAGAGACACGGTGCAGTCATTCCATTTCAATTTGAAGTTGATATAACCAAGGTGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGTAGCTTCGAATACCATATCAACCCATCCACTCTTCCTGAACCTGAAACGCTTGTGTGGTGCCACGTTTTTCATACGAGATTCAGTCATTTCTGGACCGAATTGAAGCCACAAATGGTGACAGACAAGAAGATGGCCAGCCATGCATGGCATGCAGTGGCTACGTTTGCACACCTGCGCTTTCTTAATAGCAGAGACTTCCTATTCCTCCTCCTTCCTCTGTCGCCTTTGTTGTATGGAACCAAGGAAGCCCTCGTGTCCCACTCGATTATCAAGCGTAGGGATCTTGATTAG

Protein Analysis

423

Amino Acids

48.99

Weight (kDa)

7.66

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 74 - 203 3.7e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AarI CACCTGC 1 cut(s) 1161
AatII GACGTC 1 cut(s) 525
Acc36I ACCTGC 2 cut(s) 624, 1161
AccB1I GGYRCC 2 cut(s) 473, 1038
AciI CCGC 5 cut(s) 46, 72, 122, 154, 312
AclWI GGATC 5 cut(s) 52, 117, 128, 141, 1269
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 2 cut(s) 522, 670
AfaI GTAC 2 cut(s) 323, 874
AfiI CCNNNNNNNGG 4 cut(s) 298, 383, 622, 831
AgsI TTSAA 4 cut(s) 233, 908, 914, 1084
AjnI CCWGG 1 cut(s) 609
AluBI AGCT 3 cut(s) 259, 868, 984
AluI AGCT 3 cut(s) 259, 868, 984
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 4 cut(s) 541, 559, 877, 1167
AlwI GGATC 5 cut(s) 52, 117, 128, 141, 1269
AoxI GGCC 3 cut(s) 89, 574, 1113
ApoI RAATTY 1 cut(s) 782
ArsI GACNNNNNNTTYG 2 cut(s) 819, 851
AspLEI GCGC 1 cut(s) 1158
AspS9I GGNCC 5 cut(s) 195, 575, 613, 835, 1074
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 4 cut(s) 3, 740, 814, 1108
AsuII TTCGAA 1 cut(s) 987
AvaII GGWCC 4 cut(s) 195, 613, 835, 1074
BalI TGGCCA 1 cut(s) 1115
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 2 cut(s) 473, 1038
BanII GRGCYC 1 cut(s) 870
BauI CACGAG 1 cut(s) 1232
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 1 cut(s) 870
BccI CCATC 4 cut(s) 22, 537, 1012, 1105
BceAI ACGGC 2 cut(s) 167, 194
BciT130I CCWGG 1 cut(s) 611
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 4 cut(s) 541, 559, 877, 1167
BfmI CTRYAG 3 cut(s) 334, 617, 652
BfuAI ACCTGC 2 cut(s) 624, 1161
BglI GCCNNNNNGGC 1 cut(s) 72
BglII AGATCT 1 cut(s) 480
BisI GCNGC 3 cut(s) 73, 155, 313
BlsI GCNGC 3 cut(s) 74, 156, 314
Bme1390I CCNGG 2 cut(s) 107, 611
Bme18I GGWCC 4 cut(s) 195, 613, 835, 1074
BmgT120I GGNCC 5 cut(s) 195, 575, 613, 835, 1074
BmiI GGNNCC 6 cut(s) 135, 197, 475, 836, 1040, 1219
BmrFI CCNGG 2 cut(s) 107, 611
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 3 cut(s) 108, 253, 729
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 987
BpuMI CCSGG 1 cut(s) 107
BsaHI GRCGYC 2 cut(s) 522, 670
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 4 cut(s) 105, 665, 927, 1221
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 383, 622, 831
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 4 cut(s) 92, 312, 555, 743
Bse3DI GCAATG 2 cut(s) 61, 67
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 4 cut(s) 105, 665, 927, 1221
BseGI GGATG 4 cut(s) 349, 529, 744, 1004
BseLI CCNNNNNNNGG 4 cut(s) 298, 383, 622, 831
BseMI GCAATG 2 cut(s) 61, 67
BseMII CTCAG 2 cut(s) 217, 725
BseNI ACTGG 4 cut(s) 92, 312, 555, 743
BseRI GAGGAG 1 cut(s) 1178
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 3 cut(s) 91, 576, 1115
BshNI GGYRCC 2 cut(s) 473, 1038
BsiHKAI GWGCWC 1 cut(s) 870
BsiSI CCGG 2 cut(s) 107, 471
BslFI GGGAC 4 cut(s) 67, 181, 638, 1222
BslI CCNNNNNNNGG 4 cut(s) 298, 383, 622, 831
BsmAI GTCTC 4 cut(s) 541, 559, 877, 1167
BsmFI GGGAC 4 cut(s) 67, 181, 638, 1222
BsnI GGCC 3 cut(s) 91, 576, 1115
Bso31I GGTCTC 1 cut(s) 559
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
BspACI CCGC 5 cut(s) 46, 72, 122, 154, 312
BspANI GGCC 3 cut(s) 91, 576, 1115
BspCNI CTCAG 2 cut(s) 216, 726
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 6 cut(s) 135, 197, 475, 836, 1040, 1219
BspMAI CTGCAG 1 cut(s) 621
BspMI ACCTGC 2 cut(s) 624, 1161
BspPI GGATC 5 cut(s) 52, 117, 128, 141, 1269
BspT104I TTCGAA 1 cut(s) 987
BspT107I GGYRCC 2 cut(s) 473, 1038
BspTNI GGTCTC 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 61, 67
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 4 cut(s) 92, 312, 555, 743
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 4 cut(s) 105, 665, 927, 1221
BssMI GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
BssNI GRCGYC 2 cut(s) 522, 670
BssSI CACGAG 1 cut(s) 1232
BssT1I CCWWGG 3 cut(s) 665, 927, 1221
Bst2BI CACGAG 1 cut(s) 1232
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 5 cut(s) 23, 301, 321, 656, 890
Bst6I CTCTTC 2 cut(s) 981, 1017
BstACI GRCGYC 2 cut(s) 522, 670
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 4 cut(s) 472, 811, 1117, 1131
BstDEI CTNAG 2 cut(s) 203, 734
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 349, 529, 744, 1004
BstHHI GCGC 1 cut(s) 1158
BstKTI GATC 7 cut(s) 60, 112, 136, 252, 483, 733, 1264
BstMAI GTCTC 4 cut(s) 541, 559, 877, 1167
BstMBI GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
BstMWI GCNNNNNNNGC 6 cut(s) 72, 88, 748, 1121, 1130, 1145
BstNI CCWGG 1 cut(s) 611
BstNSI RCATGY 1 cut(s) 1133
BstSCI CCNGG 2 cut(s) 105, 609
BstSFI CTRYAG 3 cut(s) 334, 617, 652
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 4 cut(s) 109, 133, 480, 1261
BstYI RGATCY 4 cut(s) 109, 133, 480, 1261
BsuRI GGCC 3 cut(s) 91, 576, 1115
BtsCI GGATG 4 cut(s) 349, 529, 744, 1004
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 2 cut(s) 750, 1140
BveI ACCTGC 2 cut(s) 624, 1161
Cac8I GCNNGC 4 cut(s) 472, 811, 1117, 1131
CciI TCATGA 1 cut(s) 658
CfoI GCGC 1 cut(s) 1158
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 5 cut(s) 195, 575, 613, 835, 1074
CseI GACGC 2 cut(s) 659, 857
Csp6I GTAC 2 cut(s) 322, 873
CviAII CATG 7 cut(s) 446, 494, 659, 970, 1121, 1125, 1130
CviQI GTAC 2 cut(s) 322, 873
DdeI CTNAG 2 cut(s) 203, 734
DpnI GATC 7 cut(s) 59, 111, 135, 251, 482, 732, 1263
DpnII GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
EaeI YGGCCR 1 cut(s) 1113
Eam1104I CTCTTC 2 cut(s) 981, 1017
EarI CTCTTC 2 cut(s) 981, 1017
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 3 cut(s) 665, 927, 1221
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 4 cut(s) 195, 613, 835, 1074
Eco53kI GAGCTC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 868
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 3 cut(s) 665, 927, 1221
EcoT22I ATGCAT 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 870
ErhI CCWWGG 3 cut(s) 665, 927, 1221
FaeI CATG 7 cut(s) 449, 497, 662, 973, 1124, 1128, 1133
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 4 cut(s) 67, 181, 638, 1222
FatI CATG 7 cut(s) 445, 493, 658, 969, 1120, 1124, 1129
Fnu4HI GCNGC 3 cut(s) 73, 155, 313
FokI GGATG 4 cut(s) 336, 516, 751, 991
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 3 cut(s) 73, 155, 313
GlaI GCGC 1 cut(s) 1157
GluI GCNGC 3 cut(s) 73, 155, 313
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 3 cut(s) 91, 576, 1115
HapII CCGG 2 cut(s) 107, 471
HgaI GACGC 2 cut(s) 659, 857
HhaI GCGC 1 cut(s) 1158
Hin1I GRCGYC 2 cut(s) 522, 670
Hin1II CATG 7 cut(s) 449, 497, 662, 973, 1124, 1128, 1133
Hin6I GCGC 1 cut(s) 1156
HinP1I GCGC 1 cut(s) 1156
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 201, 1059
HpaII CCGG 2 cut(s) 107, 471
HphI GGTGA 4 cut(s) 3, 740, 814, 1108
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 5 cut(s) 27, 254, 700, 735, 804
Hpy188III TCNNGA 7 cut(s) 185, 198, 533, 659, 1016, 1072, 1265
Hpy8I GTNNAC 1 cut(s) 934
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 2 cut(s) 389, 1202
HpyCH4III ACNGT 5 cut(s) 23, 301, 321, 656, 890
HpyCH4IV ACGT 3 cut(s) 522, 1044, 1142
HpyCH4V TGCA 7 cut(s) 602, 619, 790, 893, 1124, 1133, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 88, 748, 1121, 1130, 1145
HpyF3I CTNAG 2 cut(s) 203, 734
HpySE526I ACGT 3 cut(s) 522, 1044, 1142
Hsp92I GRCGYC 2 cut(s) 522, 670
Hsp92II CATG 7 cut(s) 449, 497, 662, 973, 1124, 1128, 1133
HspAI GCGC 1 cut(s) 1156
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
Kzo9I GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
LmnI GCTCC 1 cut(s) 856
LweI GCATC 3 cut(s) 108, 253, 729
MaeII ACGT 3 cut(s) 522, 1044, 1142
MaeIII GTNAC 3 cut(s) 158, 820, 1096
MalI GATC 7 cut(s) 59, 111, 135, 251, 482, 732, 1263
MboI GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
MboII GAAGA 6 cut(s) 32, 509, 857, 968, 1004, 1120
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 4 cut(s) 109, 133, 480, 1261
MhlI GDGCHC 1 cut(s) 870
MlsI TGGCCA 1 cut(s) 1115
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 320
Mox20I TGGCCA 1 cut(s) 1115
Mph1103I ATGCAT 1 cut(s) 1126
MroNI GCCGGC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 1115
MseI TTAA 1 cut(s) 1164
MslI CAYNNNNRTG 2 cut(s) 216, 243
Msp20I TGGCCA 1 cut(s) 1115
MspI CCGG 2 cut(s) 107, 471
MspR9I CCNGG 2 cut(s) 107, 611
MunI CAATTG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 611
MwoI GCNNNNNNNGC 6 cut(s) 72, 88, 748, 1121, 1130, 1145
NaeI GCCGGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 107
NdeII GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
NgoMIV GCCGGC 1 cut(s) 470
NlaIII CATG 7 cut(s) 449, 497, 662, 973, 1124, 1128, 1133
NlaIV GGNNCC 6 cut(s) 135, 197, 475, 836, 1040, 1219
NmuCI GTSAC 3 cut(s) 158, 820, 1096
NsiI ATGCAT 1 cut(s) 1126
NspI RCATGY 1 cut(s) 1133
NspV TTCGAA 1 cut(s) 987
PaeI GCATGC 1 cut(s) 1133
PagI TCATGA 1 cut(s) 658
PaqCI CACCTGC 1 cut(s) 1161
PdiI GCCGGC 1 cut(s) 472
PfeI GAWTC 1 cut(s) 1059
PfoI TCCNGGA 1 cut(s) 609
PkrI GCNGC 3 cut(s) 74, 156, 314
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 195
PsiI TTATAA 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 870
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 609
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 6 cut(s) 135, 197, 475, 836, 1040, 1219
PspPI GGNCC 5 cut(s) 195, 575, 613, 835, 1074
PspPPI RGGWCCY 1 cut(s) 195
PstI CTGCAG 1 cut(s) 621
PsuI RGATCY 4 cut(s) 109, 133, 480, 1261
RsaI GTAC 2 cut(s) 323, 874
RsaNI GTAC 2 cut(s) 322, 873
RseI CAYNNNNRTG 2 cut(s) 216, 243
SacI GAGCTC 1 cut(s) 870
SaqAI TTAA 1 cut(s) 1164
SatI GCNGC 3 cut(s) 73, 155, 313
Sau3AI GATC 7 cut(s) 57, 109, 133, 249, 480, 730, 1261
Sau96I GGNCC 5 cut(s) 195, 575, 613, 835, 1074
SbfI CCTGCAGG 1 cut(s) 621
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 107, 611
SdaI CCTGCAGG 1 cut(s) 621
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 3 cut(s) 108, 253, 729
SfcI CTRYAG 3 cut(s) 334, 617, 652
SfuI TTCGAA 1 cut(s) 987
SinI GGWCC 4 cut(s) 195, 613, 835, 1074
SmiMI CAYNNNNRTG 2 cut(s) 216, 243
SphI GCATGC 1 cut(s) 1133
Sse8387I CCTGCAGG 1 cut(s) 621
SsiI CCGC 5 cut(s) 46, 72, 122, 154, 312
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 105, 609
StyI CCWWGG 3 cut(s) 665, 927, 1221
TaaI ACNGT 5 cut(s) 23, 301, 321, 656, 890
TaiI ACGT 3 cut(s) 525, 1047, 1145
TaqI TCGA 3 cut(s) 421, 987, 1244
TaqII GACCGA 1 cut(s) 1091
TauI GCSGC 3 cut(s) 75, 157, 315
TfiI GAWTC 1 cut(s) 1059
Tru1I TTAA 1 cut(s) 1164
Tru9I TTAA 1 cut(s) 1164
TscAI CASTG 2 cut(s) 750, 1140
TseFI GTSAC 3 cut(s) 158, 820, 1096
Tsp45I GTSAC 3 cut(s) 158, 820, 1096
TspDTI ATGAA 6 cut(s) 456, 510, 771, 858, 958, 1040
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 2 cut(s) 750, 1140
VpaK11BI GGWCC 4 cut(s) 195, 613, 835, 1074
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 1 cut(s) 782
XceI RCATGY 1 cut(s) 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
ZraI GACGTC 1 cut(s) 523
Zsp2I ATGCAT 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.