Rw1G009170

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000213
Physical Location & Seq
Reverse (-)
20172872 .. 20174173
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009170.1

Sequence Viewer

Length: 942 bp
ATGTCCCACAAAAAATGTCTTAAATTAACCGAAGCCAGCGATGGCAAAGAAAGAAGGCATCGTCTGGTTCGGCATTGCTGCCCTCTTCAGAAGCACAAGAAGCACAGGTGTGATGGATGCGTGATGAAGAAGAAGAAGAAATTAAGAGTATCAGAGAAGGTGAAGAAGACAACGAAGAAGTTGAAGCTGGAGGAGGAGGAGGCTAAGAAGTCACTCTACATATGTTTCGTTGAACAACGCGAGGGTGGGAGCGTCGCTATTGTTGTTCGTACCATCAAATTATCCGACTTGTTATCCTCCGATGAAGAATTGCAATTGCGGCAAGTGGCTTATAAGGCCGGGGAAGATGTTCCCGATTTTGTTGGTTGTGCTGTTTTCGGCTCCCAAATCATTTTCGCCGGTGGCGTGAGCCCCAGCTTGGGTTCCGACAGAGAATGGAGACTAGTCCCTACTATGTGTGGCGGCGGCCCTTTTCCTTTTATGGGCAACGCCTTTGTCCTGGACCTGCCGGAGCGCCATGATGACAAGAAGAAGATTATGTTTGCTTATATTCATGATACGTGGAGGCTGGGAGTTTATCTTTTTTCCTTGGAGGAAGGTCAGGAATCCATTGCACCGATTGGTTATTTGAAGCTGCCATGGTGGCCTTATGAATTGGGTTCGGCAGCAGGCTGTGATTTTGTCCACATAGGAGGTCAGAAAGCCTGCATTCTTATCACCCAATTCAACCTTCCTTATGGTGAAGGACCTGACTATAAGCCCGGGACTTATAAGAAGCGGGGTGTTGCGATACCATTTCAATTTCAAGTTGATATCACTAAGGTGGACAGGGACGAGAAGAATTGTTTCACTCTCCAATTCATGACTCCTCGCACCTTCGAATTCCAGACCAACCCATCCACTTTTCCTCTACCTTTTACGGTTGGTTGCTTTCTGCTGTAA

Protein Analysis

313

Amino Acids

35.53

Weight (kDa)

9.02

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 333, 771
Acc36I ACCTGC 1 cut(s) 513
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 319, 462, 465, 778
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 3 cut(s) 418, 419, 482
AgsI TTSAA 6 cut(s) 184, 233, 631, 727, 800, 806
AhlI ACTAGT 1 cut(s) 442
AjnI CCWGG 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AleI CACNNNNGTG 2 cut(s) 108, 821
AluBI AGCT 3 cut(s) 187, 417, 634
AluI AGCT 3 cut(s) 187, 417, 634
Alw26I GTCTC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 3 cut(s) 336, 466, 644
ApeKI GCWGC 3 cut(s) 78, 634, 665
ApoI RAATTY 1 cut(s) 881
Asp700I GAANNNNTTC 2 cut(s) 348, 845
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 3 cut(s) 467, 502, 746
AsuC2I CCSGG 3 cut(s) 340, 762, 763
AsuHPI GGTGA 3 cut(s) 172, 709, 752
AsuII TTCGAA 1 cut(s) 879
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 502, 746
BanII GRGCYC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 65, 621, 677
BccI CCATC 4 cut(s) 35, 107, 281, 904
BciT130I CCWGG 1 cut(s) 500
BcnI CCSGG 3 cut(s) 340, 762, 763
BcoDI GTCTC 1 cut(s) 433
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 513
BglI GCCNNNNNGGC 1 cut(s) 643
BisI GCNGC 6 cut(s) 79, 320, 463, 466, 635, 666
BlsI GCNGC 6 cut(s) 80, 321, 464, 467, 636, 667
Bme1390I CCNGG 4 cut(s) 340, 500, 762, 763
Bme18I GGWCC 2 cut(s) 502, 746
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 3 cut(s) 467, 502, 746
BmiI GGNNCC 2 cut(s) 382, 424
BmrFI CCNGG 4 cut(s) 340, 500, 762, 763
BmsI GCATC 2 cut(s) 67, 107
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 340, 762, 763
BsaAI YACGTR 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 339, 588, 638, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 419, 482
Bse118I RCCGGY 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 73, 609
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 4 cut(s) 339, 588, 638, 761
BseGI GGATG 2 cut(s) 122, 896
BseLI CCNNNNNNNGG 3 cut(s) 418, 419, 482
BseMI GCAATG 2 cut(s) 73, 609
BseRI GAGGAG 4 cut(s) 206, 209, 212, 858
BseXI GCAGC 3 cut(s) 65, 621, 677
BseYI CCCAGC 2 cut(s) 413, 568
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 338, 468, 646
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 4 cut(s) 339, 399, 509, 762
BslFI GGGAC 3 cut(s) 431, 778, 845
BslI CCNNNNNNNGG 3 cut(s) 418, 419, 482
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 3 cut(s) 431, 778, 845
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 3 cut(s) 338, 468, 646
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 1 cut(s) 879
Bsp1286I GDGCHC 1 cut(s) 413
Bsp19I CCATGG 1 cut(s) 638
BspACI CCGC 4 cut(s) 319, 462, 465, 778
BspANI GGCC 3 cut(s) 338, 468, 646
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 2 cut(s) 553, 861
BspLI GGNNCC 2 cut(s) 382, 424
BspMI ACCTGC 1 cut(s) 513
BspT104I TTCGAA 1 cut(s) 879
BsrDI GCAATG 2 cut(s) 73, 609
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 339, 588, 638, 761
BssT1I CCWWGG 2 cut(s) 588, 638
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 922
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 879
BstC8I GCNNGC 3 cut(s) 37, 670, 706
BstDEI CTNAG 2 cut(s) 204, 819
BstDSI CCRYGG 1 cut(s) 638
BstF5I GGATG 2 cut(s) 122, 896
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstMAI GTCTC 1 cut(s) 433
BstMWI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 643
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 4 cut(s) 338, 498, 760, 761
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 65, 621, 677
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 3 cut(s) 338, 468, 646
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 122, 896
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 37, 670, 706
CciI TCATGA 2 cut(s) 553, 861
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 467, 502, 746
Cfr9I CCCGGG 1 cut(s) 761
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 518, 554, 639, 862
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 204, 819
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 588, 638
Eco24I GRGCYC 1 cut(s) 413
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 2 cut(s) 502, 746
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 746
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 588, 638
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 588, 638
FaeI CATG 4 cut(s) 521, 557, 642, 865
FaqI GGGAC 3 cut(s) 431, 778, 845
FatI CATG 4 cut(s) 517, 553, 638, 861
FauI CCCGC 1 cut(s) 771
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 6 cut(s) 79, 320, 463, 466, 635, 666
FokI GGATG 2 cut(s) 129, 883
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 6 cut(s) 79, 320, 463, 466, 635, 666
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 515
GluI GCNGC 6 cut(s) 79, 320, 463, 466, 635, 666
GsaI CCCAGC 2 cut(s) 417, 572
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 3 cut(s) 338, 468, 646
HapII CCGG 4 cut(s) 339, 399, 509, 762
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 516
Hin1II CATG 4 cut(s) 521, 557, 642, 865
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 2 cut(s) 605, 865
HpaII CCGG 4 cut(s) 339, 399, 509, 762
HphI GGTGA 3 cut(s) 172, 709, 752
Hpy166II GTNNAC 2 cut(s) 685, 826
Hpy188I TCNGA 6 cut(s) 90, 154, 286, 301, 427, 699
Hpy188III TCNNGA 5 cut(s) 353, 554, 602, 862, 886
Hpy8I GTNNAC 2 cut(s) 685, 826
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 6 cut(s) 48, 151, 590, 737, 740, 886
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 3 cut(s) 313, 614, 708
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 643
HpyF3I CTNAG 2 cut(s) 204, 819
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 4 cut(s) 521, 557, 642, 865
HspAI GCGC 1 cut(s) 514
LmnI GCTCC 3 cut(s) 249, 386, 511
Lsp1109I GCAGC 3 cut(s) 65, 621, 677
LweI GCATC 2 cut(s) 67, 107
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 210
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 413
MlyI GAGTC 1 cut(s) 859
MmeI TCCRAC 2 cut(s) 309, 450
MroXI GAANNNNTTC 2 cut(s) 348, 845
MseI TTAA 3 cut(s) 21, 26, 143
MslI CAYNNNNRTG 2 cut(s) 108, 821
MspI CCGG 4 cut(s) 339, 399, 509, 762
MspR9I CCNGG 4 cut(s) 340, 500, 762, 763
MunI CAATTG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 643
NciI CCSGG 3 cut(s) 340, 762, 763
NcoI CCATGG 1 cut(s) 638
NdeI CATATG 1 cut(s) 221
NlaIII CATG 4 cut(s) 521, 557, 642, 865
NlaIV GGNNCC 2 cut(s) 382, 424
NmuCI GTSAC 1 cut(s) 210
NspV TTCGAA 1 cut(s) 879
OliI CACNNNNGTG 2 cut(s) 108, 821
PagI TCATGA 2 cut(s) 553, 861
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 708
PdmI GAANNNNTTC 2 cut(s) 348, 845
PfeI GAWTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 6 cut(s) 80, 321, 464, 467, 636, 667
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
Ppu21I YACGTR 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 746
PsiI TTATAA 2 cut(s) 333, 771
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 498
PspFI CCCAGC 2 cut(s) 413, 568
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 382, 424
PspPI GGNCC 3 cut(s) 467, 502, 746
PspPPI RGGWCCY 1 cut(s) 746
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 108, 821
SaqAI TTAA 3 cut(s) 21, 26, 143
SatI GCNGC 6 cut(s) 79, 320, 463, 466, 635, 666
Sau96I GGNCC 3 cut(s) 467, 502, 746
SchI GAGTC 1 cut(s) 859
ScrFI CCNGG 4 cut(s) 340, 500, 762, 763
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 2 cut(s) 67, 107
SfuI TTCGAA 1 cut(s) 879
SgrAI CRCCGGYG 1 cut(s) 398
SinI GGWCC 2 cut(s) 502, 746
SmaI CCCGGG 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 108, 821
SpeI ACTAGT 1 cut(s) 442
SsiI CCGC 4 cut(s) 319, 462, 465, 778
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 4 cut(s) 338, 498, 760, 761
StyI CCWWGG 2 cut(s) 588, 638
TaaI ACNGT 1 cut(s) 922
TaiI ACGT 1 cut(s) 563
TaqI TCGA 1 cut(s) 879
TauI GCSGC 3 cut(s) 322, 465, 468
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 3 cut(s) 21, 26, 143
Tru9I TTAA 3 cut(s) 21, 26, 143
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 3 cut(s) 78, 634, 665
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 5 cut(s) 140, 318, 542, 666, 850
TspMI CCCGGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 502, 746
XapI RAATTY 1 cut(s) 881
XmaI CCCGGG 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 348, 845
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.