RchiOBHm_Chr2g0090681

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000213
Physical Location & Seq
Forward (+)
4426005 .. 4427648
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46592

Sequence Viewer

Length: 1260 bp
ATGTCTACGTCCTCCAAAAAACCGCTTGACGTAACCACCCGGCACTGCAGTGAACATCGGCATAAGGCTCATAAGCATACGCGTGATGGGAAGAAGAAGAAGAAGAAGACCAAAGAGACAACCAAGCCCAAGTTGAAGTTGGAGGTGGAGGAGGCTAATAAGTCACTCTACATGTGTATTCTAGAGCACGGGACGAACTGGGCTGCTTATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCATCTTCGGCGGTGGGGGACGATCCATTGCCATTGCGGCAAGTGGCTTATGAGGCCGGTTCGCATCTCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTCACGGCTTCAGGAATATAGGTCCCGACTCAGTTTGGCATACAAATGTTTATGCCTTTGAAACACACACAAATGAGATAAGAAAGCTTGATGCCAATTTACAAGGAGGGAAATTGTACCCTCTGACGGTGGAGCTGGGCGGCAAACTGTACGCTCTTTCCTATAGGCTGGTCGGCCATCCTCCCTCATTTGAGGTATTTGACCCTAAAATAGGCAAGTGGGAAGGTTTGCCCCAGCCTCCATTTTTCCAAGTTGGCTCTCCATATTATGAACATGCCAGCTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCCCATGAAGAATGTCCTGTGTTCTGCTTTGACGTCGCCCATCCAGACAGAGATTGGAGACTGGTCTCTACTATGTGCCGGGGTGGCCCTTTCCCCTTTGATAACAAAGTTGCATTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAATTATCACAAAAATCGGTGATCTGAGGATGCCACTCTTGCCTGATGAATTTGGTTTGCCACAACGCTGTGAATTTTTGCACATTGGAGGTCAGAAAGCGTGCCTTGTTGTCACCGAAATTGGCGTCCGTGCTGAAGACGCTCCTGCTTATAATGAGCTCGGTACTCATAAGAGACACGGTGCAGTCATTCCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCACCCACTCTTCCTGAACCTGAAACGGTTGGTTGCTTTCTGTTGTAA

Protein Analysis

419

Amino Acids

47.06

Weight (kDa)

7.29

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 60 - 274 1.3e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AatII GACGTC 1 cut(s) 735
Acc36I ACCTGC 1 cut(s) 834
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 82
AciI CCGC 7 cut(s) 23, 217, 254, 280, 330, 363, 522
AclWI GGATC 4 cut(s) 260, 325, 336, 349
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 2 cut(s) 968, 992
AcuI CTGAAG 2 cut(s) 376, 1074
AcyI GRCGYC 3 cut(s) 732, 880, 1044
AfaI GTAC 3 cut(s) 500, 533, 1084
AfiI CCNNNNNNNGG 3 cut(s) 508, 593, 832
AflIII ACRYGT 2 cut(s) 80, 171
AgsI TTSAA 4 cut(s) 136, 443, 1118, 1124
AjnI CCWGG 1 cut(s) 819
AleI CACNNNNGTG 2 cut(s) 48, 1139
AluBI AGCT 6 cut(s) 378, 469, 517, 663, 1078, 1194
AluI AGCT 6 cut(s) 378, 469, 517, 663, 1078, 1194
Alw21I GWGCWC 2 cut(s) 189, 1080
Alw26I GTCTC 4 cut(s) 110, 751, 769, 1087
AlwI GGATC 4 cut(s) 260, 325, 336, 349
AoxI GGCC 3 cut(s) 297, 556, 784
ApeKI GCWGC 2 cut(s) 203, 1191
ApoI RAATTY 2 cut(s) 968, 992
ArsI GACNNNNNNTTYG 2 cut(s) 1029, 1061
AspS9I GGNCC 3 cut(s) 404, 785, 823
AsuC2I CCSGG 3 cut(s) 40, 315, 779
AsuHPI GGTGA 4 cut(s) 349, 950, 1024, 1126
AsuII TTCGAA 1 cut(s) 1197
AvaII GGWCC 2 cut(s) 404, 823
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 1080
BbsI GAAGAC 2 cut(s) 113, 1062
Bbv12I GWGCWC 2 cut(s) 189, 1080
BbvI GCAGC 2 cut(s) 190, 1203
BccI CCATC 4 cut(s) 80, 230, 567, 747
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 821
BcnI CCSGG 3 cut(s) 40, 315, 779
BcoDI GTCTC 4 cut(s) 110, 751, 769, 1087
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 4 cut(s) 46, 544, 827, 862
BfuAI ACCTGC 1 cut(s) 834
BglI GCCNNNNNGGC 2 cut(s) 280, 783
BglII AGATCT 1 cut(s) 690
BisI GCNGC 5 cut(s) 204, 281, 364, 523, 1192
BlsI GCNGC 5 cut(s) 205, 282, 365, 524, 1193
Bme1390I CCNGG 4 cut(s) 40, 315, 779, 821
Bme18I GGWCC 2 cut(s) 404, 823
BmgT120I GGNCC 3 cut(s) 404, 785, 823
BmiI GGNNCC 3 cut(s) 343, 406, 685
BmrFI CCNGG 4 cut(s) 40, 315, 779, 821
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 3 cut(s) 316, 463, 939
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 113, 1062
Bpu14I TTCGAA 1 cut(s) 1197
BpuMI CCSGG 3 cut(s) 40, 315, 779
BsaHI GRCGYC 3 cut(s) 732, 880, 1044
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 313, 778, 875, 1137
Bsc4I CCNNNNNNNGG 3 cut(s) 508, 593, 832
Bse118I RCCGGY 3 cut(s) 299, 359, 680
Bse1I ACTGG 2 cut(s) 203, 765
Bse3DI GCAATG 2 cut(s) 269, 275
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 4 cut(s) 313, 778, 875, 1137
BseGI GGATG 3 cut(s) 559, 739, 954
BseLI CCNNNNNNNGG 3 cut(s) 508, 593, 832
BseMI GCAATG 2 cut(s) 269, 275
BseMII CTCAG 2 cut(s) 426, 935
BseNI ACTGG 2 cut(s) 203, 765
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 190, 1203
BseYI CCCAGC 3 cut(s) 374, 517, 615
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 299, 558, 786
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 189, 1080
BsiSI CCGG 6 cut(s) 40, 300, 315, 360, 681, 778
BslFI GGGAC 4 cut(s) 205, 275, 390, 848
BslI CCNNNNNNNGG 3 cut(s) 508, 593, 832
BsmAI GTCTC 4 cut(s) 110, 751, 769, 1087
BsmFI GGGAC 4 cut(s) 205, 275, 390, 848
BsnI GGCC 3 cut(s) 299, 558, 786
Bso31I GGTCTC 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 1197
Bsp1286I GDGCHC 2 cut(s) 189, 1080
Bsp143I GATC 5 cut(s) 265, 317, 341, 690, 940
BspACI CCGC 7 cut(s) 23, 217, 254, 280, 330, 363, 522
BspANI GGCC 3 cut(s) 299, 558, 786
BspCNI CTCAG 2 cut(s) 425, 936
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 343, 406, 685
BspMAI CTGCAG 2 cut(s) 50, 831
BspMI ACCTGC 1 cut(s) 834
BspPI GGATC 4 cut(s) 260, 325, 336, 349
BspT104I TTCGAA 1 cut(s) 1197
BspT107I GGYRCC 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 769
BsrDI GCAATG 2 cut(s) 269, 275
BsrFI RCCGGY 3 cut(s) 299, 359, 680
BsrI ACTGG 2 cut(s) 203, 765
BssAI RCCGGY 3 cut(s) 299, 359, 680
BssECI CCNNGG 4 cut(s) 313, 778, 875, 1137
BssMI GATC 5 cut(s) 265, 317, 341, 690, 940
BssNI GRCGYC 3 cut(s) 732, 880, 1044
BssT1I CCWWGG 2 cut(s) 875, 1137
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 6 cut(s) 231, 511, 531, 866, 1100, 1240
Bst6I CTCTTC 2 cut(s) 1191, 1227
BstACI GRCGYC 3 cut(s) 732, 880, 1044
BstBI TTCGAA 1 cut(s) 1197
BstC8I GCNNGC 3 cut(s) 661, 682, 1021
BstDEI CTNAG 2 cut(s) 412, 944
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 3 cut(s) 559, 739, 954
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 5 cut(s) 268, 320, 344, 693, 943
BstMAI GTCTC 4 cut(s) 110, 751, 769, 1087
BstMBI GATC 5 cut(s) 265, 317, 341, 690, 940
BstMWI GCNNNNNNNGC 5 cut(s) 280, 296, 783, 958, 1058
BstNI CCWGG 1 cut(s) 821
BstNSI RCATGY 2 cut(s) 175, 659
BstSCI CCNGG 4 cut(s) 38, 313, 777, 819
BstSFI CTRYAG 4 cut(s) 46, 544, 827, 862
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 190, 1203
BstV2I GAAGAC 2 cut(s) 113, 1062
BstX2I RGATCY 3 cut(s) 317, 341, 690
BstYI RGATCY 3 cut(s) 317, 341, 690
BsuRI GGCC 3 cut(s) 299, 558, 786
BtsCI GGATG 3 cut(s) 559, 739, 954
BtsI GCAGTG 2 cut(s) 43, 55
BtsIMutI CAGTG 2 cut(s) 43, 55
BveI ACCTGC 1 cut(s) 834
Cac8I GCNNGC 3 cut(s) 661, 682, 1021
CciI TCATGA 1 cut(s) 868
Cfr10I RCCGGY 3 cut(s) 299, 359, 680
Cfr13I GGNCC 3 cut(s) 404, 785, 823
CseI GACGC 3 cut(s) 869, 1033, 1067
Csp6I GTAC 3 cut(s) 499, 532, 1083
CviAII CATG 5 cut(s) 172, 656, 704, 869, 1180
CviQI GTAC 3 cut(s) 499, 532, 1083
DdeI CTNAG 2 cut(s) 412, 944
DpnI GATC 5 cut(s) 267, 319, 343, 692, 942
DpnII GATC 5 cut(s) 265, 317, 341, 690, 940
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 1191, 1227
EarI CTCTTC 2 cut(s) 1191, 1227
Ecl136II GAGCTC 1 cut(s) 1078
Eco130I CCWWGG 2 cut(s) 875, 1137
Eco24I GRGCYC 1 cut(s) 1080
Eco31I GGTCTC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 1132
Eco47I GGWCC 2 cut(s) 404, 823
Eco53kI GAGCTC 1 cut(s) 1078
Eco57I CTGAAG 2 cut(s) 376, 1074
EcoICRI GAGCTC 1 cut(s) 1078
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 819
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 2 cut(s) 875, 1137
EcoT38I GRGCYC 1 cut(s) 1080
ErhI CCWWGG 2 cut(s) 875, 1137
FaeI CATG 5 cut(s) 175, 659, 707, 872, 1183
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FaqI GGGAC 4 cut(s) 205, 275, 390, 848
FatI CATG 5 cut(s) 171, 655, 703, 868, 1179
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 204, 281, 364, 523, 1192
FokI GGATG 3 cut(s) 546, 726, 961
FriOI GRGCYC 1 cut(s) 1080
Fsp4HI GCNGC 5 cut(s) 204, 281, 364, 523, 1192
FspBI CTAG 1 cut(s) 182
GluI GCNGC 5 cut(s) 204, 281, 364, 523, 1192
GsaI CCCAGC 3 cut(s) 378, 521, 619
HaeIII GGCC 3 cut(s) 299, 558, 786
HapII CCGG 6 cut(s) 40, 300, 315, 360, 681, 778
HgaI GACGC 3 cut(s) 869, 1033, 1067
Hin1I GRCGYC 3 cut(s) 732, 880, 1044
Hin1II CATG 5 cut(s) 175, 659, 707, 872, 1183
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 1 cut(s) 410
HpaII CCGG 6 cut(s) 40, 300, 315, 360, 681, 778
HphI GGTGA 4 cut(s) 349, 950, 1024, 1126
Hpy166II GTNNAC 3 cut(s) 6, 53, 1144
Hpy188I TCNGA 5 cut(s) 235, 507, 910, 945, 1014
Hpy188III TCNNGA 6 cut(s) 182, 394, 407, 743, 869, 1226
Hpy8I GTNNAC 3 cut(s) 6, 53, 1144
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 6 cut(s) 231, 511, 531, 866, 1100, 1240
HpyCH4IV ACGT 3 cut(s) 8, 30, 732
HpyCH4V TGCA 5 cut(s) 48, 812, 829, 1000, 1103
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 296, 783, 958, 1058
HpyF3I CTNAG 2 cut(s) 412, 944
HpySE526I ACGT 3 cut(s) 8, 30, 732
Hsp92I GRCGYC 3 cut(s) 732, 880, 1044
Hsp92II CATG 5 cut(s) 175, 659, 707, 872, 1183
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
Kzo9I GATC 5 cut(s) 265, 317, 341, 690, 940
LmnI GCTCC 3 cut(s) 383, 514, 1066
Lsp1109I GCAGC 2 cut(s) 190, 1203
LweI GCATC 3 cut(s) 316, 463, 939
MaeI CTAG 1 cut(s) 182
MaeII ACGT 3 cut(s) 8, 30, 732
MaeIII GTNAC 4 cut(s) 31, 162, 367, 1030
MalI GATC 5 cut(s) 267, 319, 343, 692, 942
MboI GATC 5 cut(s) 265, 317, 341, 690, 940
MflI RGATCY 3 cut(s) 317, 341, 690
MhlI GDGCHC 2 cut(s) 189, 1080
MluI ACGCGT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 120, 213
MroNI GCCGGC 1 cut(s) 680
MslI CAYNNNNRTG 5 cut(s) 48, 81, 426, 453, 1139
MspI CCGG 6 cut(s) 40, 300, 315, 360, 681, 778
MspR9I CCNGG 4 cut(s) 40, 315, 779, 821
MvaI CCWGG 1 cut(s) 821
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 5 cut(s) 280, 296, 783, 958, 1058
NaeI GCCGGC 1 cut(s) 682
NciI CCSGG 3 cut(s) 40, 315, 779
NdeII GATC 5 cut(s) 265, 317, 341, 690, 940
NgoMIV GCCGGC 1 cut(s) 680
NlaIII CATG 5 cut(s) 175, 659, 707, 872, 1183
NlaIV GGNNCC 3 cut(s) 343, 406, 685
NmuCI GTSAC 3 cut(s) 162, 367, 1030
NspI RCATGY 2 cut(s) 175, 659
NspV TTCGAA 1 cut(s) 1197
OliI CACNNNNGTG 2 cut(s) 48, 1139
PagI TCATGA 1 cut(s) 868
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 682
PfoI TCCNGGA 1 cut(s) 819
PkrI GCNGC 5 cut(s) 205, 282, 365, 524, 1193
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 404
PscI ACATGT 1 cut(s) 171
PsiI TTATAA 1 cut(s) 1071
Psp124BI GAGCTC 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 819
PspFI CCCAGC 3 cut(s) 374, 517, 615
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 3 cut(s) 343, 406, 685
PspPI GGNCC 3 cut(s) 404, 785, 823
PspPPI RGGWCCY 1 cut(s) 404
PstI CTGCAG 2 cut(s) 50, 831
PsuI RGATCY 3 cut(s) 317, 341, 690
RsaI GTAC 3 cut(s) 500, 533, 1084
RsaNI GTAC 3 cut(s) 499, 532, 1083
RseI CAYNNNNRTG 5 cut(s) 48, 81, 426, 453, 1139
SacI GAGCTC 1 cut(s) 1080
SatI GCNGC 5 cut(s) 204, 281, 364, 523, 1192
Sau3AI GATC 5 cut(s) 265, 317, 341, 690, 940
Sau96I GGNCC 3 cut(s) 404, 785, 823
SbfI CCTGCAGG 1 cut(s) 831
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 4 cut(s) 40, 315, 779, 821
SdaI CCTGCAGG 1 cut(s) 831
SduI GDGCHC 2 cut(s) 189, 1080
SfaNI GCATC 3 cut(s) 316, 463, 939
SfcI CTRYAG 4 cut(s) 46, 544, 827, 862
SfuI TTCGAA 1 cut(s) 1197
SgrAI CRCCGGYG 1 cut(s) 359
SinI GGWCC 2 cut(s) 404, 823
SmiMI CAYNNNNRTG 5 cut(s) 48, 81, 426, 453, 1139
Sse8387I CCTGCAGG 1 cut(s) 831
SsiI CCGC 7 cut(s) 23, 217, 254, 280, 330, 363, 522
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 1080
StyD4I CCNGG 4 cut(s) 38, 313, 777, 819
StyI CCWWGG 2 cut(s) 875, 1137
TaaI ACNGT 6 cut(s) 231, 511, 531, 866, 1100, 1240
TaiI ACGT 3 cut(s) 11, 33, 735
TaqI TCGA 1 cut(s) 1197
TauI GCSGC 3 cut(s) 283, 366, 525
TscAI CASTG 2 cut(s) 50, 55
TseFI GTSAC 3 cut(s) 162, 367, 1030
TseI GCWGC 2 cut(s) 203, 1191
Tsp45I GTSAC 3 cut(s) 162, 367, 1030
TspDTI ATGAA 4 cut(s) 666, 720, 981, 1168
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 2 cut(s) 50, 55
VpaK11BI GGWCC 2 cut(s) 404, 823
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 2 cut(s) 968, 992
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 175, 659
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 750
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.