Rmu_sc0003952.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003952.1
OG0000213
Physical Location & Seq
Forward (+)
12103 .. 12450
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003952.1_g000005.1.cds

Sequence Viewer

Length: 348 bp
atgtgtcggggtggccctttcccctttgataacaaagttgcattagtcctggacctgcaggggaacgatgacaagaaaataatgtttgcctacagtcatgagccttggcgtctatgggtatatcttatgtcattgtctgaaaaccaagaaactatcacaaaaatcggtgatctgaggatgccagtgttgcctgatgaattgggtttgccacagcgctgtgaatttttgcacattggaggtcagaaagcgtgccttgttgtcaccgaaattggcgtccgtgctgaagacgctcctgcttataatgagcttggtactcataagagacactgtgcagtcattccattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

5.75

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 2 cut(s) 109, 273
AfaI GTAC 1 cut(s) 313
AfeI AGCGCT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 316
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 14, 52
AsuHPI GGTGA 2 cut(s) 179, 253
AvaII GGWCC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 316
BfmI CTRYAG 2 cut(s) 56, 91
BfoI RGCGCY 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 14, 52
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 109, 273
BsaJI CCNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 182
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 2 cut(s) 109, 273
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 95, 329
BstACI GRCGYC 2 cut(s) 109, 273
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 187, 287
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 2 cut(s) 56, 91
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 189, 325
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 14, 52
CseI GACGC 3 cut(s) 98, 262, 296
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 98
CviJI RGCY 3 cut(s) 15, 103, 307
CviKI_1 RGCY 3 cut(s) 15, 103, 307
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 52
Eco47III AGCGCT 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 101
FaiI YATR 6 cut(s) 99, 115, 121, 128, 300, 318
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 97
FokI GGATG 1 cut(s) 190
GlaI GCGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 3 cut(s) 98, 262, 296
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 2 cut(s) 109, 273
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HphI GGTGA 2 cut(s) 179, 253
Hpy188I TCNGA 3 cut(s) 139, 174, 243
Hpy188III TCNNGA 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 95, 329
HpyCH4V TGCA 4 cut(s) 41, 58, 229, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 287
HpyF3I CTNAG 1 cut(s) 173
Hsp92I GRCGYC 2 cut(s) 109, 273
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 35, 44, 62, 68, 195, 204, 306
LweI GCATC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 296
MluCI AATT 3 cut(s) 197, 221, 267
MnlI CCTC 2 cut(s) 168, 230
MseI TTAA 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 187, 287
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 259
PagI TCATGA 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 48
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 2 cut(s) 14, 52
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 346
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 14, 52
SbfI CCTGCAGG 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 50
SdaI CCTGCAGG 1 cut(s) 60
SetI ASST 3 cut(s) 57, 241, 309
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 2 cut(s) 56, 91
SinI GGWCC 1 cut(s) 52
Sse8387I CCTGCAGG 1 cut(s) 60
Sse9I AATT 3 cut(s) 197, 221, 267
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 95, 329
TasI AATT 3 cut(s) 197, 221, 267
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TscAI CASTG 2 cut(s) 189, 332
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 189, 332
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.