RLG00000016002

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
3106260 .. 3106742
483 bp
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UTR
Exon/CDS
Intron
RLM00000016002

Sequence Viewer

Length: 483 bp
ATGAACAAAAAATCATTTAACCTAGAAAGCTCTGGCAAAGAAGAAGAAAGGTGTCACAGTCATCCGCATAAGCTTCAGACGATTCGGCACTATGAAAAAGACTTGAAAGTGAAAACAAGCAAGGTGAAGAAGAATCAGAGCACTCTTGTTCGGTGCGGCAGGAGCTTGAAGGCGGAGGAGCTTTATCGTAAGTCCCTCTACTTTTGTAGCTTTGAAATTAACCAGTCCATTCATAAGCCCGAGGAAAAATGGGATGCTTTTGTTGTCCACGCCATCAATCTTGGCGATTTCTTCTCATCGTCATCACCCAAAATGAAACTAGAATTACGACAAGTAGCTTATAAGGGAGGAAATGACCTCCCCATTTTTTGGGGATTGCTGTGTGTTGGGCTCCCAGATTGTTTTCGTCAGCAGCCTGAAATAAAACCCTCCTGGGCGCTGTTTGAGTGGATGTGGCTCCAGTCGAGAAGCTTATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.77

Weight (kDa)

9.23

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 369
AciI CCGC 3 cut(s) 65, 156, 173
AcuI CTGAAG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 3 cut(s) 106, 169, 215
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 7 cut(s) 30, 73, 165, 181, 210, 338, 471
AluI AGCT 7 cut(s) 30, 73, 165, 181, 210, 338, 471
Alw21I GWGCWC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 136, 297
AvaI CYCGRG 1 cut(s) 239
BanII GRGCYC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 433
BfaI CTAG 2 cut(s) 23, 320
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 2 cut(s) 157, 413
BlsI GCNGC 2 cut(s) 158, 414
Bme1390I CCNGG 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 392, 458
BmrFI CCNGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 240, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 223, 460
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 240, 432
BseGI GGATG 3 cut(s) 61, 259, 456
BseLI CCNNNNNNNGG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 223, 460
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 143, 393
BspACI CCGC 3 cut(s) 65, 156, 173
BspLI GGNNCC 2 cut(s) 392, 458
BsrI ACTGG 2 cut(s) 223, 460
BssECI CCNNGG 2 cut(s) 240, 432
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 59
BstF5I GGATG 3 cut(s) 61, 259, 456
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 424
BtsCI GGATG 3 cut(s) 61, 259, 456
CfoI GCGC 1 cut(s) 439
EciI GGCGGA 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 393
FaiI YATR 5 cut(s) 69, 93, 234, 342, 475
FaqI GGGAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 157, 413
FokI GGATG 3 cut(s) 48, 266, 463
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 2 cut(s) 157, 413
FspBI CTAG 2 cut(s) 23, 320
GlaI GCGC 1 cut(s) 438
GluI GCNGC 2 cut(s) 157, 413
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 440
HhaI GCGC 1 cut(s) 439
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HindIII AAGCTT 2 cut(s) 71, 469
HinfI GANTC 2 cut(s) 82, 133
HphI GGTGA 2 cut(s) 136, 297
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 78, 138
Hpy188III TCNNGA 1 cut(s) 465
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HspAI GCGC 1 cut(s) 437
LmnI GCTCC 4 cut(s) 162, 178, 396, 462
LpnPI CCDG 8 cut(s) 18, 145, 236, 408, 418, 429, 445, 473
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 23, 320
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 5 cut(s) 53, 56, 139, 142, 283
MhlI GDGCHC 2 cut(s) 143, 393
MluCI AATT 2 cut(s) 216, 323
MnlI CCTC 6 cut(s) 169, 206, 235, 341, 368, 439
MseI TTAA 2 cut(s) 18, 219
MspR9I CCNGG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIV GGNNCC 2 cut(s) 392, 458
NmuCI GTSAC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 82, 133
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 2 cut(s) 158, 414
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 392, 458
SaqAI TTAA 2 cut(s) 18, 219
SatI GCNGC 2 cut(s) 157, 413
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 2 cut(s) 143, 393
SfaNI GCATC 1 cut(s) 244
Sse9I AATT 2 cut(s) 216, 323
SsiI CCGC 3 cut(s) 65, 156, 173
SspMI CTAG 2 cut(s) 23, 320
StyD4I CCNGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 464
TasI AATT 2 cut(s) 216, 323
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 82, 133
Tru1I TTAA 2 cut(s) 18, 219
Tru9I TTAA 2 cut(s) 18, 219
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 4 cut(s) 17, 108, 221, 329
Van91I CCANNNNNTGG 1 cut(s) 369
XspI CTAG 2 cut(s) 23, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.