FvH4_1g03720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Forward (+)
1995904 .. 1996461
558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03720.t1

Sequence Viewer

Length: 558 bp
ATGACCGAAAAAAATTTAAACCCAGAAAGCCACGGTGAAGAAGCAAGGGAAGGAGATCAAAGCCGTAAGCGTATCAATACGGGCACAGGTAGCGAGGTGGAGATGAAGCCTGTGGTTGGGTGCGGTGGAGGGTTGAAGGACCAAGTTGCTGGTAAGTCTCTAATCCTTTGTAGCATGGAATGTTACTGGGACAGACCCAACTTTCGGCCCCCTCCGCCAAGGTATCCTCCTCAGCCTTGGGATTCTTCCTATGTTGTTCGCTCCATCAATCTTCCCGATCTGCTGACATCGTCGTCGTCGGAGAAACTAGAATTGCGGGAACTAGCGAGAATGGACGACAAAGATTTCCCAGGTAAAGATCTCCCGAGTAGAGTAGGTCTCCCAGGTAGAGTTGGTTGCGGTGTTTTGGGGTCCAAGATTGTCATCGCCAGCGGCTTTAAACCCAACTTCGATCCGGATCGTTTCGGACCACCATACGGCCCTCATCCCAGCACAGATGCTTATGCCTTCGATGCCCATGACCCCAAACAAGGAATAGTCAAGATGCCGGGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.24

Weight (kDa)

6.31

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 5 cut(s) 123, 215, 316, 399, 432
AclWI GGATC 2 cut(s) 446, 465
AcsI RAATTY 1 cut(s) 13
AfiI CCNNNNNNNGG 4 cut(s) 116, 204, 476, 530
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 2 cut(s) 349, 382
Alw26I GTCTC 2 cut(s) 162, 383
AlwI GGATC 2 cut(s) 446, 465
Ama87I CYCGRG 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 2 cut(s) 206, 478
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AspS9I GGNCC 5 cut(s) 139, 207, 411, 467, 479
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 3 cut(s) 139, 411, 467
BaeGI GKGCMC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 272
BceAI ACGGC 2 cut(s) 48, 493
BciT130I CCWGG 2 cut(s) 351, 384
BciVI GTATCC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 162, 383
BfaI CTAG 2 cut(s) 308, 323
BfuI GTATCC 1 cut(s) 234
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 433
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 3 cut(s) 351, 384, 549
Bme18I GGWCC 3 cut(s) 139, 411, 467
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 5 cut(s) 139, 207, 411, 467, 479
BmiI GGNNCC 2 cut(s) 209, 412
BmrFI CCNGG 3 cut(s) 351, 384, 549
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 487, 502, 534
BmuI ACTGGG 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 363, 395
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 549
BsaBI GATNNNNATC 2 cut(s) 422, 456
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 6 cut(s) 31, 218, 236, 349, 382, 548
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 204, 476, 530
Bse1I ACTGG 1 cut(s) 191
Bse8I GATNNNNATC 2 cut(s) 422, 456
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 2 cut(s) 351, 384
BseDI CCNNGG 6 cut(s) 31, 218, 236, 349, 382, 548
BseGI GGATG 1 cut(s) 484
BseJI GATNNNNATC 2 cut(s) 422, 456
BseLI CCNNNNNNNGG 4 cut(s) 116, 204, 476, 530
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 488
BshFI GGCC 2 cut(s) 208, 480
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 2 cut(s) 455, 548
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 4 cut(s) 116, 204, 476, 530
BsmAI GTCTC 2 cut(s) 162, 383
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 208, 480
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 5 cut(s) 55, 277, 358, 451, 457
BspACI CCGC 5 cut(s) 123, 215, 316, 399, 432
BspANI GGCC 2 cut(s) 208, 480
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 209, 412
BspPI GGATC 2 cut(s) 446, 465
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 6 cut(s) 31, 218, 236, 349, 382, 548
BssMI GATC 5 cut(s) 55, 277, 358, 451, 457
BssT1I CCWWGG 2 cut(s) 218, 236
Bst2UI CCWGG 2 cut(s) 351, 384
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 5 cut(s) 58, 280, 361, 454, 460
BstMAI GTCTC 2 cut(s) 162, 383
BstMBI GATC 5 cut(s) 55, 277, 358, 451, 457
BstMWI GCNNNNNNNGC 3 cut(s) 90, 214, 512
BstNI CCWGG 2 cut(s) 351, 384
BstSCI CCNGG 3 cut(s) 349, 382, 547
BstSLI GKGCMC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 208, 480
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 409
BtsCI GGATG 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 430
Cfr13I GGNCC 5 cut(s) 139, 207, 411, 467, 479
CviAII CATG 2 cut(s) 175, 518
CviJI RGCY 8 cut(s) 30, 63, 109, 208, 235, 435, 480, 553
CviKI_1 RGCY 8 cut(s) 30, 63, 109, 208, 235, 435, 480, 553
DdeI CTNAG 1 cut(s) 231
DpnI GATC 5 cut(s) 57, 279, 360, 453, 459
DpnII GATC 5 cut(s) 55, 277, 358, 451, 457
DraI TTTAAA 2 cut(s) 18, 439
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 218, 236
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 139, 411, 467
Eco88I CYCGRG 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 349, 382
EcoT14I CCWWGG 2 cut(s) 218, 236
ErhI CCWWGG 2 cut(s) 218, 236
FaeI CATG 2 cut(s) 178, 521
FaiI YATR 5 cut(s) 176, 252, 475, 504, 519
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 174, 517
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 2 cut(s) 308, 323
GluI GCNGC 1 cut(s) 433
GsaI CCCAGC 1 cut(s) 492
HaeIII GGCC 2 cut(s) 208, 480
HapII CCGG 2 cut(s) 455, 548
Hin1II CATG 2 cut(s) 178, 521
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 455, 548
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 301, 467
Hpy188III TCNNGA 4 cut(s) 275, 364, 455, 541
Hpy99I CGWCG 3 cut(s) 295, 298, 301
HpyAV CCTTC 3 cut(s) 44, 130, 517
HpyCH4III ACNGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 214, 512
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 178, 521
Kpn2I TCCGGA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 55, 277, 358, 451, 457
LmnI GCTCC 1 cut(s) 266
LweI GCATC 3 cut(s) 487, 502, 534
MaeI CTAG 2 cut(s) 308, 323
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 57, 279, 360, 453, 459
MboI GATC 5 cut(s) 55, 277, 358, 451, 457
MboII GAAGA 3 cut(s) 50, 237, 263
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 2 cut(s) 13, 311
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 6 cut(s) 88, 122, 222, 237, 240, 492
MroI TCCGGA 1 cut(s) 454
MseI TTAA 3 cut(s) 17, 438, 556
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 2 cut(s) 455, 548
MspR9I CCNGG 3 cut(s) 351, 384, 549
MvaI CCWGG 2 cut(s) 351, 384
MwoI GCNNNNNNNGC 3 cut(s) 90, 214, 512
NciI CCSGG 1 cut(s) 549
NdeII GATC 5 cut(s) 55, 277, 358, 451, 457
NlaIII CATG 2 cut(s) 178, 521
NlaIV GGNNCC 2 cut(s) 209, 412
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 349, 382
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 2 cut(s) 349, 382
PspN4I GGNNCC 2 cut(s) 209, 412
PspPI GGNCC 5 cut(s) 139, 207, 411, 467, 479
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 17, 438, 556
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 5 cut(s) 55, 277, 358, 451, 457
Sau96I GGNCC 5 cut(s) 139, 207, 411, 467, 479
ScrFI CCNGG 3 cut(s) 351, 384, 549
SduI GDGCHC 1 cut(s) 86
SetI ASST 6 cut(s) 91, 99, 224, 355, 379, 388
SfaNI GCATC 3 cut(s) 487, 502, 534
SinI GGWCC 3 cut(s) 139, 411, 467
Sse9I AATT 2 cut(s) 13, 311
SsiI CCGC 5 cut(s) 123, 215, 316, 399, 432
SspMI CTAG 2 cut(s) 308, 323
StyD4I CCNGG 3 cut(s) 349, 382, 547
StyI CCWWGG 2 cut(s) 218, 236
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 450, 510
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 13, 311
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 17, 438, 556
Tru9I TTAA 3 cut(s) 17, 438, 556
TspDTI ATGAA 1 cut(s) 119
Tth111I GACNNNGTC 1 cut(s) 289
VpaK11BI GGWCC 3 cut(s) 139, 411, 467
XapI RAATTY 1 cut(s) 13
XspI CTAG 2 cut(s) 308, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.