RLG00000029858

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000213
Physical Location & Seq
Forward (+)
50269402 .. 50269896
495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029858

Sequence Viewer

Length: 411 bp
ATGTGCCAAGACGACCCTTTTCCCTTTTTAGGTAAAGTTCTCGTGCTCGACACCAAGCACCATAACAAGAAGATAATGTTTACAGCAGAGAACTATGATGACTATGGTTACCGGAGTAGGGTACTAGTTTATCTTCTGTCCCTCAATGAAAGCCAAGAAACAATCACTCCAATCCATGAGTTGAAGCTGCCTTACCAGGAGCTGCCCCCTGATCTACCTGAAGACCATTATGTCACCCTTGGGACTCATTTGCTGCAGGCTGCTCTCATACCTTTTGAATTTGAATTTGACATCTCCAAGGCTATCACAAATTGTTTCACTGTCCAATTCCAGACTCATCACATCTTGGAATATCGTACCAACCCATCCACTCTTCCTTTCACTTGCACACTCGGTTGCTTTGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.8

Weight (kDa)

5.18

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 278, 284
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 123, 358
AfiI CCNNNNNNNGG 2 cut(s) 29, 118
AgsI TTSAA 3 cut(s) 184, 278, 284
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 187, 202
AluI AGCT 2 cut(s) 187, 202
Alw21I GWGCWC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 187, 202, 253, 260
ApoI RAATTY 2 cut(s) 278, 284
AsuHPI GGTGA 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 4 cut(s) 174, 189, 240, 247
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 254
BisI GCNGC 4 cut(s) 188, 203, 254, 261
BlsI GCNGC 4 cut(s) 189, 204, 255, 262
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 238, 297
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 118
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 238, 297
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 2 cut(s) 29, 118
BseXI GCAGC 4 cut(s) 174, 189, 240, 247
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 124, 256
BslI CCNNNNNNNGG 2 cut(s) 29, 118
BsmFI GGGAC 2 cut(s) 124, 256
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 238, 297
BssMI GATC 1 cut(s) 211
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 238, 297
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 197
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 174, 189, 240, 247
BstV2I GAAGAC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 122, 357
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 153, 187, 202, 260, 302
CviKI_1 RGCY 5 cut(s) 153, 187, 202, 260, 302
CviQI GTAC 2 cut(s) 122, 357
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 238, 297
Eco57I CTGAAG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 238, 297
ErhI CCWWGG 2 cut(s) 238, 297
FaeI CATG 1 cut(s) 179
FaiI YATR 6 cut(s) 63, 96, 105, 177, 231, 269
FaqI GGGAC 2 cut(s) 124, 256
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 188, 203, 254, 261
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 4 cut(s) 188, 203, 254, 261
FspBI CTAG 1 cut(s) 125
GluI GCNGC 4 cut(s) 188, 203, 254, 261
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 179
HinfI GANTC 2 cut(s) 244, 334
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 256, 387
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 125, 182, 209, 222, 231, 242, 344
Lsp1109I GCAGC 4 cut(s) 174, 189, 240, 247
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 107, 232
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 4 cut(s) 82, 125, 233, 365
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 4 cut(s) 278, 284, 310, 326
MlyI GAGTC 2 cut(s) 238, 328
MnlI CCTC 1 cut(s) 152
MseI TTAA 1 cut(s) 409
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 232
PkrI GCNGC 4 cut(s) 189, 204, 255, 262
PleI GAGTC 2 cut(s) 238, 328
PpsI GAGTC 2 cut(s) 238, 328
Psp6I CCWGG 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 195
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 123, 358
RsaNI GTAC 2 cut(s) 122, 357
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 4 cut(s) 188, 203, 254, 261
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 2 cut(s) 238, 328
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 48
SetI ASST 5 cut(s) 34, 189, 204, 220, 274
SfcI CTRYAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 4 cut(s) 278, 284, 310, 326
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 238, 297
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 48
TasI AATT 4 cut(s) 278, 284, 310, 326
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 187, 202, 253, 260
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 325
XapI RAATTY 2 cut(s) 278, 284
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.