Rroxscaffold_3G00227400

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000213
Physical Location & Seq
Reverse (-)
11508212 .. 11512747
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227400.1

Sequence Viewer

Length: 1353 bp
ATGAGGAGTTGGTGTGTATATAAAGGGGGGCCGAGAACTAGTTCCCATTTCATATCTCCATCTCTCAGACAGTCAAATCCAAAGGAAAGGAAACAGAGGAAGCAACAAAAGCAAAGAAACAAACATATGTCTATGTCCTCCCAAAAACCGCTTGACCTACCCACCAGCGACGGCGAAGAGGAGAGGCAGCAACACCCGCTCCGGAAGACCAAAGAGAAGTTGAAGTGGGAGTTGGAGCTGGAGGAGGGTGATAAGTCATTCTACATGTGTTGTCTAGAGCACAGGAGCGACTGGGTGGCTTATGTTGTCCACACCATCAAACTGTCGGATTTGTTATCATATTCGGCGGTGGGGGACGAGCCACCGCGATTACGGCAAGTGGCTTATAAGGCCGGTTCGCATCTCCCCGGCTCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTTTCGGCTTCAGGACAATAGGTCCTGACTCAATTTGGCATACAAATGTTTATGCCTTTGAAACTCACACAAATGAGATCACAAAGCTTGATGCCAATTTACAAGGAGGGAAAATGGAACCTTTGATGGTGGAGCTGGAGGGCAAACTGTACGCTCTTTCCTATACGCTGGTCGGCCATCCTCCCTCATTTGAGGTGTTTGACCCTAAAATAGGCAAGTGGGAAGGTTTACCCCAACCTCCATTCTTCCAAGTTGACTCTCCATATTATGATCATGGAAACTTCTCTTATGCAATCGCCGGCACAAAGATGTTTGCCTCCCATGAAAAATGTCCAGTGTTCTGCTTTGACGTCGCCCACCCGGATAGAGAATGGAGACTAGTCCCTACTATGTGCCGGGGTGGCCCTTTTCCCTTCAATAACAAGGCTTTAGTCCTGGACCTGCAGGAGGACGACAAGAAGAAAATAATGTTTGGCTACAGTTATGAGCCTTGGCGTCTAAGTGTATATCTTATGTCATTGTCTGAAAACCAAGAAATTATCACAAAAATCGGTCATCTGAGGTTGCCAGTGTTGCCTGGTGAATTGGGTTTCCCGCAACGCTGTGAATTTTTGCACATAGGCGGTCAGAAAGCCTGCCTTGTTGTCACCGAATTCGACTTCCGTGGTGGAGTCGATGCTCCTGCTTATAATGAGCTCAATACTCATAAGAGACACGGTGCAGTCATACCATCTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAACACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCAGTTTTCCTGAACCTGAAACGGTTGGCTGCTTTCTGCTGTGA

Protein Analysis

450

Amino Acids

51.26

Weight (kDa)

7.25

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 145 - 286 2.7e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 387, 1164
AatII GACGTC 1 cut(s) 828
Acc36I ACCTGC 1 cut(s) 924
AccBSI CCGCTC 1 cut(s) 199
AccII CGCG 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 8 cut(s) 149, 197, 347, 365, 423, 456, 1070, 1098
AclWI GGATC 2 cut(s) 429, 442
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 2 cut(s) 1082, 1127
AcuI CTGAAG 1 cut(s) 469
AcyI GRCGYC 2 cut(s) 825, 970
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 686, 922
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 4 cut(s) 223, 536, 892, 1217
AhdI GACNNNNNGTC 1 cut(s) 495
AhlI ACTAGT 2 cut(s) 38, 853
AjnI CCWGG 2 cut(s) 909, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AleI CACNNNNGTG 1 cut(s) 1232
AluBI AGCT 6 cut(s) 238, 471, 562, 610, 1171, 1287
AluI AGCT 6 cut(s) 238, 471, 562, 610, 1171, 1287
Alw21I GWGCWC 2 cut(s) 282, 1173
Alw26I GTCTC 2 cut(s) 844, 1180
AlwI GGATC 2 cut(s) 429, 442
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 4 cut(s) 29, 390, 649, 877
ApeKI GCWGC 3 cut(s) 187, 1284, 1338
ApoI RAATTY 2 cut(s) 1082, 1127
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 4 cut(s) 29, 497, 878, 913
AsuC2I CCSGG 3 cut(s) 408, 836, 872
AsuHPI GGTGA 5 cut(s) 260, 442, 1067, 1114, 1219
AsuII TTCGAA 1 cut(s) 1290
AvaII GGWCC 2 cut(s) 497, 913
BamHI GGATCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 1173
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 282, 1173
BbvI GCAGC 3 cut(s) 199, 1296, 1325
BccI CCATC 6 cut(s) 67, 323, 595, 660, 1213, 1315
BceAI ACGGC 2 cut(s) 187, 389
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BciT130I CCWGG 2 cut(s) 911, 1053
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 3 cut(s) 408, 836, 872
BcoDI GTCTC 2 cut(s) 844, 1180
BcuI ACTAGT 2 cut(s) 38, 853
BfaI CTAG 3 cut(s) 39, 275, 854
BfmI CTRYAG 2 cut(s) 917, 952
BfuAI ACCTGC 1 cut(s) 924
BglI GCCNNNNNGGC 1 cut(s) 876
BisI GCNGC 4 cut(s) 188, 457, 1285, 1339
BlsI GCNGC 4 cut(s) 189, 458, 1286, 1340
Bme1390I CCNGG 5 cut(s) 408, 836, 872, 911, 1053
Bme18I GGWCC 2 cut(s) 497, 913
BmeRI GACNNNNNGTC 1 cut(s) 495
BmgT120I GGNCC 4 cut(s) 29, 497, 878, 913
BmiI GGNNCC 3 cut(s) 30, 436, 594
BmrFI CCNGG 5 cut(s) 408, 836, 872, 911, 1053
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 409, 556, 1141
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 2 cut(s) 260, 632
Bpu14I TTCGAA 1 cut(s) 1290
BpuMI CCSGG 3 cut(s) 408, 836, 872
BsaHI GRCGYC 2 cut(s) 825, 970
BsaJI CCNNGG 5 cut(s) 406, 871, 965, 1138, 1230
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 3 cut(s) 28, 183, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 922
Bse118I RCCGGY 3 cut(s) 392, 452, 773
Bse1I ACTGG 4 cut(s) 296, 809, 1043, 1311
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 2 cut(s) 911, 1053
BseDI CCNNGG 5 cut(s) 406, 871, 965, 1138, 1230
BseGI GGATG 2 cut(s) 652, 1307
BseLI CCNNNNNNNGG 2 cut(s) 686, 922
BseMII CTCAG 2 cut(s) 79, 1025
BseNI ACTGG 4 cut(s) 296, 809, 1043, 1311
BseRI GAGGAG 3 cut(s) 19, 194, 257
BseXI GCAGC 3 cut(s) 199, 1296, 1325
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 1215
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 4 cut(s) 31, 392, 651, 879
BsiHKAI GWGCWC 2 cut(s) 282, 1173
BsiSI CCGG 7 cut(s) 202, 393, 408, 453, 774, 836, 871
BslFI GGGAC 2 cut(s) 368, 842
BslI CCNNNNNNNGG 2 cut(s) 686, 922
BsmAI GTCTC 2 cut(s) 844, 1180
BsmFI GGGAC 2 cut(s) 368, 842
BsnI GGCC 4 cut(s) 31, 392, 651, 879
Bsp119I TTCGAA 1 cut(s) 1290
Bsp1286I GDGCHC 2 cut(s) 282, 1173
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 434, 552, 745
BspACI CCGC 8 cut(s) 149, 197, 347, 365, 423, 456, 1070, 1098
BspANI GGCC 4 cut(s) 31, 392, 651, 879
BspCNI CTCAG 2 cut(s) 78, 1026
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 30, 436, 594
BspMAI CTGCAG 1 cut(s) 921
BspMI ACCTGC 1 cut(s) 924
BspPI GGATC 2 cut(s) 429, 442
BspT104I TTCGAA 1 cut(s) 1290
BsrBI CCGCTC 1 cut(s) 199
BsrFI RCCGGY 3 cut(s) 392, 452, 773
BsrI ACTGG 4 cut(s) 296, 809, 1043, 1311
BssAI RCCGGY 3 cut(s) 392, 452, 773
BssECI CCNNGG 5 cut(s) 406, 871, 965, 1138, 1230
BssMI GATC 3 cut(s) 434, 552, 745
BssNI GRCGYC 2 cut(s) 825, 970
BssT1I CCWWGG 2 cut(s) 965, 1230
Bst2UI CCWGG 2 cut(s) 911, 1053
Bst4CI ACNGT 6 cut(s) 72, 324, 624, 956, 1193, 1333
Bst6I CTCTTC 2 cut(s) 171, 1284
BstACI GRCGYC 2 cut(s) 825, 970
BstBI TTCGAA 1 cut(s) 1290
BstC8I GCNNGC 2 cut(s) 775, 1111
BstDEI CTNAG 3 cut(s) 65, 974, 1034
BstDSI CCRYGG 1 cut(s) 1138
BstENI CCTNNNNNAGG 2 cut(s) 684, 920
BstF5I GGATG 2 cut(s) 652, 1307
BstFNI CGCG 1 cut(s) 367
BstKTI GATC 3 cut(s) 437, 555, 748
BstMAI GTCTC 2 cut(s) 844, 1180
BstMBI GATC 3 cut(s) 434, 552, 745
BstMWI GCNNNNNNNGC 6 cut(s) 109, 196, 373, 389, 876, 1048
BstNI CCWGG 2 cut(s) 911, 1053
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 5 cut(s) 406, 834, 870, 909, 1051
BstSFI CTRYAG 2 cut(s) 917, 952
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 3 cut(s) 199, 1296, 1325
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 4 cut(s) 31, 392, 651, 879
BtgI CCRYGG 1 cut(s) 1138
BtsCI GGATG 2 cut(s) 652, 1307
BtsIMutI CAGTG 2 cut(s) 816, 1050
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 2 cut(s) 775, 1111
Cfr10I RCCGGY 3 cut(s) 392, 452, 773
Cfr13I GGNCC 4 cut(s) 29, 497, 878, 913
CseI GACGC 1 cut(s) 959
Csp6I GTAC 1 cut(s) 625
CviAII CATG 4 cut(s) 265, 749, 797, 1273
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 65, 974, 1034
DpnI GATC 3 cut(s) 436, 554, 747
DpnII GATC 3 cut(s) 434, 552, 745
DriI GACNNNNNGTC 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 171, 1284
Eam1105I GACNNNNNGTC 1 cut(s) 495
EarI CTCTTC 2 cut(s) 171, 1284
Ecl136II GAGCTC 1 cut(s) 1171
Eco130I CCWWGG 2 cut(s) 965, 1230
Eco24I GRGCYC 1 cut(s) 1173
Eco32I GATATC 1 cut(s) 1225
Eco47I GGWCC 2 cut(s) 497, 913
Eco53kI GAGCTC 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 1171
EcoNI CCTNNNNNAGG 2 cut(s) 684, 920
EcoO109I RGGNCCY 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 2 cut(s) 909, 1051
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 2 cut(s) 965, 1230
EcoT38I GRGCYC 1 cut(s) 1173
ErhI CCWWGG 2 cut(s) 965, 1230
FaeI CATG 4 cut(s) 268, 752, 800, 1276
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FaqI GGGAC 2 cut(s) 368, 842
FatI CATG 4 cut(s) 264, 748, 796, 1272
FauI CCCGC 2 cut(s) 204, 1077
FauNDI CATATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 188, 457, 1285, 1339
FokI GGATG 2 cut(s) 639, 1294
FriOI GRGCYC 1 cut(s) 1173
Fsp4HI GCNGC 4 cut(s) 188, 457, 1285, 1339
FspBI CTAG 3 cut(s) 39, 275, 854
GluI GCNGC 4 cut(s) 188, 457, 1285, 1339
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 2 cut(s) 260, 632
HaeIII GGCC 4 cut(s) 31, 392, 651, 879
HapII CCGG 7 cut(s) 202, 393, 408, 453, 774, 836, 871
HgaI GACGC 1 cut(s) 959
Hin1I GRCGYC 2 cut(s) 825, 970
Hin1II CATG 4 cut(s) 268, 752, 800, 1276
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 3 cut(s) 503, 731, 1146
HpaII CCGG 7 cut(s) 202, 393, 408, 453, 774, 836, 871
HphI GGTGA 5 cut(s) 260, 442, 1067, 1114, 1219
Hpy166II GTNNAC 4 cut(s) 310, 704, 730, 1237
Hpy188I TCNGA 5 cut(s) 68, 328, 1000, 1035, 1104
Hpy188III TCNNGA 5 cut(s) 202, 275, 487, 500, 1319
Hpy8I GTNNAC 4 cut(s) 310, 704, 730, 1237
Hpy99I CGWCG 2 cut(s) 173, 830
HpyAV CCTTC 2 cut(s) 692, 898
HpyCH4III ACNGT 6 cut(s) 72, 324, 624, 956, 1193, 1333
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 4 cut(s) 767, 919, 1090, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 196, 373, 389, 876, 1048
HpyF3I CTNAG 3 cut(s) 65, 974, 1034
HpySE526I ACGT 1 cut(s) 825
Hsp92I GRCGYC 2 cut(s) 825, 970
Hsp92II CATG 4 cut(s) 268, 752, 800, 1276
Kpn2I TCCGGA 1 cut(s) 201
KroI GCCGGC 1 cut(s) 773
KroNI GCCGGC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 3 cut(s) 434, 552, 745
LmnI GCTCC 6 cut(s) 204, 235, 285, 476, 607, 1159
Lsp1109I GCAGC 3 cut(s) 199, 1296, 1325
LweI GCATC 3 cut(s) 409, 556, 1141
MaeI CTAG 3 cut(s) 39, 275, 854
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 2 cut(s) 460, 1120
MalI GATC 3 cut(s) 436, 554, 747
MbiI CCGCTC 1 cut(s) 199
MboI GATC 3 cut(s) 434, 552, 745
MboII GAAGA 5 cut(s) 188, 217, 712, 946, 1271
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 282, 1173
MlyI GAGTC 3 cut(s) 497, 725, 1155
MmeI TCCRAC 2 cut(s) 213, 306
MroI TCCGGA 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 773
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 1 cut(s) 1259
MslI CAYNNNNRTG 4 cut(s) 519, 546, 782, 1232
MspI CCGG 7 cut(s) 202, 393, 408, 453, 774, 836, 871
MspR9I CCNGG 5 cut(s) 408, 836, 872, 911, 1053
MvaI CCWGG 2 cut(s) 911, 1053
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 6 cut(s) 109, 196, 373, 389, 876, 1048
NaeI GCCGGC 1 cut(s) 775
NciI CCSGG 3 cut(s) 408, 836, 872
NdeI CATATG 1 cut(s) 126
NdeII GATC 3 cut(s) 434, 552, 745
NgoMIV GCCGGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 268, 752, 800, 1276
NlaIV GGNNCC 3 cut(s) 30, 436, 594
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 460, 1120
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 1290
OliI CACNNNNGTG 1 cut(s) 1232
PciI ACATGT 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 909
PkrI GCNGC 4 cut(s) 189, 458, 1286, 1340
PleI GAGTC 3 cut(s) 497, 725, 1154
PpsI GAGTC 3 cut(s) 497, 725, 1154
PpuMI RGGWCCY 1 cut(s) 497
PscI ACATGT 1 cut(s) 264
PsiI TTATAA 2 cut(s) 387, 1164
Psp124BI GAGCTC 1 cut(s) 1173
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 909, 1051
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 909, 1051
PspN4I GGNNCC 3 cut(s) 30, 436, 594
PspPI GGNCC 4 cut(s) 29, 497, 878, 913
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 1 cut(s) 921
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 4 cut(s) 519, 546, 782, 1232
SacI GAGCTC 1 cut(s) 1173
SaqAI TTAA 1 cut(s) 1259
SatI GCNGC 4 cut(s) 188, 457, 1285, 1339
Sau3AI GATC 3 cut(s) 434, 552, 745
Sau96I GGNCC 4 cut(s) 29, 497, 878, 913
SbfI CCTGCAGG 1 cut(s) 921
SchI GAGTC 3 cut(s) 497, 725, 1155
ScrFI CCNGG 5 cut(s) 408, 836, 872, 911, 1053
SdaI CCTGCAGG 1 cut(s) 921
SduI GDGCHC 2 cut(s) 282, 1173
SfaNI GCATC 3 cut(s) 409, 556, 1141
SfcI CTRYAG 2 cut(s) 917, 952
SfuI TTCGAA 1 cut(s) 1290
SgrAI CRCCGGYG 1 cut(s) 452
SinI GGWCC 2 cut(s) 497, 913
SmiMI CAYNNNNRTG 4 cut(s) 519, 546, 782, 1232
SpeI ACTAGT 2 cut(s) 38, 853
Sse8387I CCTGCAGG 1 cut(s) 921
SsiI CCGC 8 cut(s) 149, 197, 347, 365, 423, 456, 1070, 1098
SspMI CTAG 3 cut(s) 39, 275, 854
SstI GAGCTC 1 cut(s) 1173
StyD4I CCNGG 5 cut(s) 406, 834, 870, 909, 1051
StyI CCWWGG 2 cut(s) 965, 1230
TaaI ACNGT 6 cut(s) 72, 324, 624, 956, 1193, 1333
TaiI ACGT 1 cut(s) 828
TaqI TCGA 3 cut(s) 1131, 1149, 1290
TaqII GACCGA 1 cut(s) 1016
TauI GCSGC 1 cut(s) 459
Tru1I TTAA 1 cut(s) 1259
Tru9I TTAA 1 cut(s) 1259
TscAI CASTG 2 cut(s) 816, 1050
TseFI GTSAC 2 cut(s) 460, 1120
TseI GCWGC 3 cut(s) 187, 1284, 1338
Tsp45I GTSAC 2 cut(s) 460, 1120
TspDTI ATGAA 3 cut(s) 40, 813, 1261
TspGWI ACGGA 1 cut(s) 1127
TspRI CASTG 2 cut(s) 816, 1050
VpaK11BI GGWCC 2 cut(s) 497, 913
XagI CCTNNNNNAGG 2 cut(s) 684, 920
XapI RAATTY 2 cut(s) 1082, 1127
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 3 cut(s) 39, 275, 854
ZraI GACGTC 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.