Rorug01G0488200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000213
Physical Location & Seq
Forward (+)
57363523 .. 57371780
8258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0488200.1

Sequence Viewer

Length: 1197 bp
ATGTCAGAAATAAACAGCAGCTGCGCCTCACAAGTCATAACATGCAAAGCGGCGGTATGTTGGGGAATGGGAGAAGAGTGCAAGGTGGAAGAGATACAAGTAGAGCCACCACAAAAGTGTGAAGTTCGTGTCAAGATGCTGTATGCCAGTCTCTGTCACACTGACATCGTCATCTCCAAAGGATACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTTGGTGTGGTAGAAAGCGTCGGGGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAGTGCCAAGAATGTGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTGACCTTTAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGAACAAAAGATGCTGTACCACCTCTTTTCGTGCTCCACATGGTCCGAGTACATGGTCCTTAACGTCAATTTCCTTGTCAAGCTCCACAACTGGGGTGCTCATGGTACAACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGATCAATTGTTGCCGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCAGCTAGGATCATTGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGAGAATCACCAATCTCAACATGATCAAGATCATAACAAATCAGTTTCTGAGCTCATCAAAGACTGCACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCTTTCATCAATGAAGCCCTAGTAGCCACAAAAATGGGTAAAGGAACAGCAGTCGTAATAGGAACCTCAAGTTCACCAACTGTTCAAATTGATTTTCTCTCCCTAATGAGTGGCAGAACCTTGAAAGGGTCCATGTTTGGAGGGCTCAGAGCGAAAACCGACCTTCCCATTCTAATCAACAAATGCATGAATAAGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCACAGATATTAACCAAGCACTTGAACTCTTAAAACAGCCGGAGTGTGTGAAGGTTCTGATCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

43.32

Weight (kDa)

5.55

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 40 - 169 1.1e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 218 - 349 2.3e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AccI GTMKAC 2 cut(s) 413, 714
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 50, 53, 381
AclI AACGTT 1 cut(s) 299
AclWI GGATC 2 cut(s) 631, 710
AfaI GTAC 4 cut(s) 400, 440, 473, 529
AfiI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
AgsI TTSAA 6 cut(s) 274, 405, 617, 977, 1015, 1151
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 7 cut(s) 21, 505, 558, 608, 698, 749, 829
AluI AGCT 7 cut(s) 21, 505, 558, 608, 698, 749, 829
Alw21I GWGCWC 4 cut(s) 458, 523, 831, 881
Alw26I GTCTC 2 cut(s) 155, 276
Alw44I GTGCAC 1 cut(s) 877
AlwI GGATC 2 cut(s) 631, 710
AlwNI CAGNNNCTG 3 cut(s) 21, 153, 824
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 3 cut(s) 18, 21, 695
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 465, 478, 1020
AsuHPI GGTGA 2 cut(s) 776, 957
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 3 cut(s) 465, 478, 1020
BaeGI GKGCMC 1 cut(s) 881
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanII GRGCYC 3 cut(s) 595, 831, 1038
Bbv12I GWGCWC 4 cut(s) 458, 523, 831, 881
BbvI GCAGC 3 cut(s) 8, 30, 707
BccI CCATC 2 cut(s) 389, 842
BceAI ACGGC 1 cut(s) 620
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 2 cut(s) 799, 1185
BcoDI GTCTC 2 cut(s) 155, 276
BfaI CTAG 4 cut(s) 555, 681, 699, 911
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 4 cut(s) 19, 22, 51, 696
BlsI GCNGC 4 cut(s) 20, 23, 52, 697
Bme18I GGWCC 3 cut(s) 465, 478, 1020
BmgT120I GGNCC 3 cut(s) 465, 478, 1020
BmiI GGNNCC 3 cut(s) 594, 955, 1021
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 3 cut(s) 126, 423, 899
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 943
BsaBI GATNNNNATC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 514, 588, 1017
Bse1I ACTGG 4 cut(s) 147, 518, 886, 1101
Bse8I GATNNNNATC 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 1105
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BseMII CTCAG 3 cut(s) 768, 816, 1051
BseNI ACTGG 4 cut(s) 147, 518, 886, 1101
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 3 cut(s) 8, 30, 707
BsgI GTGCAG 2 cut(s) 714, 826
Bsh1236I CGCG 1 cut(s) 207
BsiHKAI GWGCWC 4 cut(s) 458, 523, 831, 881
BsiSI CCGG 2 cut(s) 582, 1166
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 514, 588, 1017
BsmAI GTCTC 2 cut(s) 155, 276
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 690
Bsp1286I GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
Bsp143I GATC 5 cut(s) 623, 702, 799, 805, 1185
BspACI CCGC 3 cut(s) 50, 53, 381
BspCNI CTCAG 3 cut(s) 769, 817, 1050
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 3 cut(s) 594, 955, 1021
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 631, 710
BsrI ACTGG 4 cut(s) 147, 518, 886, 1101
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 5 cut(s) 623, 702, 799, 805, 1185
BssT1I CCWWGG 1 cut(s) 596
Bst4CI ACNGT 2 cut(s) 418, 973
Bst6I CTCTTC 2 cut(s) 69, 84
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 4 cut(s) 609, 777, 825, 1037
BstF5I GGATG 1 cut(s) 1105
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 5 cut(s) 626, 705, 802, 808, 1188
BstMAI GTCTC 2 cut(s) 155, 276
BstMBI GATC 5 cut(s) 623, 702, 799, 805, 1185
BstMWI GCNNNNNNNGC 3 cut(s) 339, 876, 914
BstNSI RCATGY 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 881
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 8, 30, 707
BstXI CCANNNNNNTGG 1 cut(s) 925
BsuI GTATCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 1105
BtsIMutI CAGTG 2 cut(s) 159, 879
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 3 cut(s) 21, 153, 824
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 465, 478, 1020
CseI GACGC 1 cut(s) 232
Csp6I GTAC 4 cut(s) 399, 439, 472, 528
CviQI GTAC 4 cut(s) 399, 439, 472, 528
DdeI CTNAG 4 cut(s) 609, 777, 825, 1037
DpnI GATC 5 cut(s) 625, 704, 801, 807, 1187
DpnII GATC 5 cut(s) 623, 702, 799, 805, 1185
Eam1104I CTCTTC 2 cut(s) 69, 84
EarI CTCTTC 2 cut(s) 69, 84
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 3 cut(s) 595, 831, 1038
Eco47I GGWCC 3 cut(s) 465, 478, 1020
Eco53kI GAGCTC 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 1079
EcoT38I GRGCYC 3 cut(s) 595, 831, 1038
ErhI CCWWGG 1 cut(s) 596
FaqI GGGAC 1 cut(s) 532
FbaI TGATCA 2 cut(s) 799, 1185
FblI GTMKAC 2 cut(s) 413, 714
Fnu4HI GCNGC 4 cut(s) 19, 22, 51, 696
FokI GGATG 1 cut(s) 1112
FriOI GRGCYC 3 cut(s) 595, 831, 1038
Fsp4HI GCNGC 4 cut(s) 19, 22, 51, 696
FspBI CTAG 4 cut(s) 555, 681, 699, 911
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 19, 22, 51, 696
HapII CCGG 2 cut(s) 582, 1166
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 3 cut(s) 372, 414, 715
HindII GTYRAC 3 cut(s) 372, 414, 715
HinfI GANTC 3 cut(s) 573, 781, 1111
HpaII CCGG 2 cut(s) 582, 1166
HphI GGTGA 2 cut(s) 776, 957
Hpy166II GTNNAC 6 cut(s) 259, 372, 414, 715, 879, 965
Hpy188I TCNGA 6 cut(s) 7, 310, 469, 826, 1040, 1185
Hpy188III TCNNGA 7 cut(s) 133, 289, 405, 803, 1108, 1115, 1189
Hpy8I GTNNAC 6 cut(s) 259, 372, 414, 715, 879, 965
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 595, 1064, 1171
HpyCH4III ACNGT 2 cut(s) 418, 973
HpyCH4IV ACGT 2 cut(s) 299, 486
HpyCH4V TGCA 9 cut(s) 45, 81, 688, 695, 843, 879, 890, 1077, 1093
HpyF10VI GCNNNNNNNGC 3 cut(s) 339, 876, 914
HpyF3I CTNAG 4 cut(s) 609, 777, 825, 1037
HpySE526I ACGT 2 cut(s) 299, 486
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 2 cut(s) 799, 1185
Kzo9I GATC 5 cut(s) 623, 702, 799, 805, 1185
LmnI GCTCC 3 cut(s) 461, 510, 598
Lsp1109I GCAGC 3 cut(s) 8, 30, 707
LweI GCATC 3 cut(s) 126, 423, 899
MaeI CTAG 4 cut(s) 555, 681, 699, 911
MaeII ACGT 2 cut(s) 299, 486
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 625, 704, 801, 807, 1187
MboI GATC 5 cut(s) 623, 702, 799, 805, 1185
MboII GAAGA 3 cut(s) 86, 101, 263
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
MluCI AATT 5 cut(s) 189, 328, 490, 627, 978
MlyI GAGTC 1 cut(s) 1105
MmeI TCCRAC 2 cut(s) 372, 637
Mph1103I ATGCAT 1 cut(s) 1079
MseI TTAA 3 cut(s) 483, 1137, 1157
MslI CAYNNNNRTG 2 cut(s) 115, 923
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 582, 1166
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 690
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 339, 876, 914
NdeII GATC 5 cut(s) 623, 702, 799, 805, 1185
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 3 cut(s) 594, 955, 1021
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 1079
NspI RCATGY 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 115
PagI TCATGA 1 cut(s) 1114
PctI GAATGC 1 cut(s) 690
PfeI GAWTC 2 cut(s) 573, 781
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 20, 23, 52, 697
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
PsiI TTATAA 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 831
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 594, 955, 1021
PspPI GGNCC 3 cut(s) 465, 478, 1020
PstNI CAGNNNCTG 3 cut(s) 21, 153, 824
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 4 cut(s) 400, 440, 473, 529
RsaNI GTAC 4 cut(s) 399, 439, 472, 528
RseI CAYNNNNRTG 2 cut(s) 115, 923
SacI GAGCTC 1 cut(s) 831
SalI GTCGAC 2 cut(s) 412, 713
SaqAI TTAA 3 cut(s) 483, 1137, 1157
SatI GCNGC 4 cut(s) 19, 22, 51, 696
Sau3AI GATC 5 cut(s) 623, 702, 799, 805, 1185
Sau96I GGNCC 3 cut(s) 465, 478, 1020
SchI GAGTC 1 cut(s) 1105
SduI GDGCHC 6 cut(s) 458, 523, 595, 831, 881, 1038
SfaNI GCATC 3 cut(s) 126, 423, 899
SinI GGWCC 3 cut(s) 465, 478, 1020
SmiMI CAYNNNNRTG 2 cut(s) 115, 923
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
Sse9I AATT 5 cut(s) 189, 328, 490, 627, 978
SsiI CCGC 3 cut(s) 50, 53, 381
SspMI CTAG 4 cut(s) 555, 681, 699, 911
SstI GAGCTC 1 cut(s) 831
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 418, 973
TaiI ACGT 2 cut(s) 302, 489
TaqI TCGA 3 cut(s) 393, 413, 714
TasI AATT 5 cut(s) 189, 328, 490, 627, 978
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 573, 781
Tru1I TTAA 3 cut(s) 483, 1137, 1157
Tru9I TTAA 3 cut(s) 483, 1137, 1157
TscAI CASTG 2 cut(s) 166, 886
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 18, 21, 695
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 6 cut(s) 743, 886, 918, 1094, 1116, 1131
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 166, 886
Tth111I GACNNNGTC 1 cut(s) 167
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 3 cut(s) 465, 478, 1020
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 413, 714
XspI CTAG 4 cut(s) 555, 681, 699, 911
Zsp2I ATGCAT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.