Rmu_sc0016852.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016852.1
OG0000213
Physical Location & Seq
Reverse (-)
39706 .. 40182
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016852.1_g000012.1.cds

Sequence Viewer

Length: 477 bp
atgtgtattctagagcacgggacggactgggcgacttatgttgtccgcaccatcaaactgtcggatttgttatcatcttcggcggtgggggactatccattgccattgcggcaagtggcttatgaggccggttcgcatctccccggatctgtgggttgcggtgtttggggatcccaaattgttttcactggcggcgtgacacccagctcccctcacggcttcaggaatataggtgccgactcagtttggcattcaaatgtttatgcctttgaaacacacacaaatgagataaaaaagcttgatgccaatttacaaggagggaaacttgaccctgccaatttacaaggagggaaacttgaccctctgacggtggaactgggcggaaaactgtacgctctttcctatagtctggtcagtcatcctccctcatttgaggtatttgaccctaaaataggcaagtgggaaggtttgtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.96

Weight (kDa)

5.8

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 6 cut(s) 46, 83, 109, 159, 192, 381
AclWI GGATC 3 cut(s) 154, 165, 178
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 367, 452
AgsI TTSAA 2 cut(s) 255, 272
AluBI AGCT 2 cut(s) 207, 298
AluI AGCT 2 cut(s) 207, 298
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 3 cut(s) 154, 165, 178
AoxI GGCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 144
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 110, 193
BlsI GCNGC 2 cut(s) 111, 194
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 172, 235
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 2 cut(s) 37, 386
BmsI GCATC 2 cut(s) 145, 292
BmuI ACTGGG 2 cut(s) 37, 386
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 452
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 32, 193, 381
Bse3DI GCAATG 2 cut(s) 98, 104
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 367, 452
BseMI GCAATG 2 cut(s) 98, 104
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 32, 193, 381
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 129, 144
BslFI GGGAC 2 cut(s) 34, 104
BslI CCNNNNNNNGG 2 cut(s) 367, 452
BsmFI GGGAC 2 cut(s) 34, 104
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 146, 170
BspACI CCGC 6 cut(s) 46, 83, 109, 159, 192, 381
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 172, 235
BspPI GGATC 3 cut(s) 154, 165, 178
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 98, 104
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 32, 193, 381
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 146, 170
Bst4CI ACNGT 3 cut(s) 60, 370, 390
BstDEI CTNAG 1 cut(s) 241
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 2 cut(s) 149, 173
BstMBI GATC 2 cut(s) 146, 170
BstMWI GCNNNNNNNGC 2 cut(s) 109, 125
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 403
BstX2I RGATCY 2 cut(s) 146, 170
BstYI RGATCY 2 cut(s) 146, 170
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 128
Csp6I GTAC 1 cut(s) 391
CviJI RGCY 5 cut(s) 119, 128, 207, 219, 298
CviKI_1 RGCY 5 cut(s) 119, 128, 207, 219, 298
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 148, 172
DpnII GATC 2 cut(s) 146, 170
EciI GGCGGA 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 450
FaiI YATR 5 cut(s) 39, 123, 230, 264, 405
FaqI GGGAC 2 cut(s) 34, 104
Fnu4HI GCNGC 2 cut(s) 110, 193
FokI GGATG 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 110, 193
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 110, 193
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 129, 144
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 129, 144
Hpy188I TCNGA 2 cut(s) 64, 366
Hpy188III TCNNGA 2 cut(s) 11, 223
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 3 cut(s) 60, 370, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 125
HpyF3I CTNAG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 146, 170
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 9 cut(s) 13, 142, 157, 174, 208, 217, 345, 362, 395
LweI GCATC 2 cut(s) 145, 292
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 148, 172
MboI GATC 2 cut(s) 146, 170
MboII GAAGA 1 cut(s) 69
MflI RGATCY 2 cut(s) 146, 170
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 3 cut(s) 177, 307, 337
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 8 cut(s) 118, 222, 311, 341, 372, 427, 432, 436
MslI CAYNNNNRTG 2 cut(s) 255, 282
MspI CCGG 2 cut(s) 129, 144
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 109, 125
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 146, 170
NlaIV GGNNCC 2 cut(s) 172, 235
NmuCI GTSAC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 111, 194
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 172, 235
PsuI RGATCY 2 cut(s) 146, 170
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 255, 282
SatI GCNGC 2 cut(s) 110, 193
Sau3AI GATC 2 cut(s) 146, 170
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 18
SetI ASST 5 cut(s) 209, 235, 300, 438, 469
SfaNI GCATC 2 cut(s) 145, 292
SfcI CTRYAG 1 cut(s) 403
SmiMI CAYNNNNRTG 2 cut(s) 255, 282
Sse9I AATT 3 cut(s) 177, 307, 337
SsiI CCGC 6 cut(s) 46, 83, 109, 159, 192, 381
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 60, 370, 390
TasI AATT 3 cut(s) 177, 307, 337
TauI GCSGC 2 cut(s) 112, 195
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 450
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.