FvH4_5g09162

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000213
Physical Location & Seq
Forward (+)
5298160 .. 5298699
540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09162.t1

Sequence Viewer

Length: 540 bp
ATGTCCCCCAAAAGATCTCGAACCCTAGCCACCAGCCACCGCGTCGAAGAAAGGCATCGGGACGAGCGTCGGCACCGGCAGCGGGACGAGCGTCGGCACCGGCATCAGGACGAGCGTCGGCATCGGCGGAAGGTGAGGAAGACATCGAACAAGTTGAAGTTGGAGTTAGATGAGGAGGAAGCAAACAAGTCACTTTACCTATGTTACCTTGAACAGAGCGGAGATTGCGTTGCTTATGTAATCCGCGCCGTCAGATTGTCCGATTTGTTGTCGTCCGAGAAGCCATCGAGATTACGGCAAGTGGGTTTTAAGGCCGGGGACCATCTCCCCGGAAGTGTAGGTTCCGGTGTTATGGGCTCCCAAATTCTTCTAGCCGGCGGGTTGAGACCCAACATCCCTTATGGGATTGGAGCACATATGCTTCCCTCAGCTGTTTGGCATAGAATGTTTATGCCTTTGAAACTGACCCCAATAAGCAACCTCGTCCTTCAATCAGGAAGCTTGATGCCACTTTACAAGGTGCCAAATTGGGCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

10.5

Isoelectric Point (pI)

71.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 72, 96, 520
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 2 cut(s) 42, 246
AciI CCGC 6 cut(s) 40, 82, 127, 219, 244, 378
AcsI RAATTY 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 82, 106
AgsI TTSAA 4 cut(s) 157, 212, 460, 491
AluBI AGCT 2 cut(s) 431, 501
AluI AGCT 2 cut(s) 431, 501
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 379
AoxI GGCC 2 cut(s) 312, 531
ApaI GGGCCC 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 363
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 3 cut(s) 319, 531, 532
AsuC2I CCSGG 2 cut(s) 316, 330
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 535
BanI GGYRCC 3 cut(s) 72, 96, 520
BanII GRGCYC 2 cut(s) 359, 535
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 415
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 292, 330
BceAI ACGGC 2 cut(s) 233, 311
BcnI CCSGG 2 cut(s) 316, 330
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 2 cut(s) 26, 371
BglII AGATCT 1 cut(s) 14
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 316, 330
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 319, 531, 532
BmiI GGNNCC 7 cut(s) 74, 98, 320, 343, 358, 522, 533
BmrFI CCNGG 2 cut(s) 316, 330
BmsI GCATC 4 cut(s) 64, 112, 130, 495
BoxI GACNNNNGTC 3 cut(s) 66, 90, 114
BpiI GAAGAC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 316, 330
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 315, 328
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 106
Bse118I RCCGGY 3 cut(s) 75, 99, 374
BseDI CCNNGG 2 cut(s) 315, 328
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 82, 106
BseMII CTCAG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 42, 246
BshFI GGCC 2 cut(s) 314, 533
BshNI GGYRCC 3 cut(s) 72, 96, 520
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 6 cut(s) 76, 100, 315, 330, 345, 375
BslFI GGGAC 3 cut(s) 74, 98, 332
BslI CCNNNNNNNGG 2 cut(s) 82, 106
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 3 cut(s) 74, 98, 332
BsnI GGCC 2 cut(s) 314, 533
Bso31I GGTCTC 1 cut(s) 379
Bsp120I GGGCCC 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 359, 415, 535
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 6 cut(s) 40, 82, 127, 219, 244, 378
BspANI GGCC 2 cut(s) 314, 533
BspCNI CTCAG 1 cut(s) 440
BspFNI CGCG 2 cut(s) 42, 246
BspLI GGNNCC 7 cut(s) 74, 98, 320, 343, 358, 522, 533
BspT107I GGYRCC 3 cut(s) 72, 96, 520
BspTNI GGTCTC 1 cut(s) 379
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 3 cut(s) 75, 99, 374
BssAI RCCGGY 3 cut(s) 75, 99, 374
BssECI CCNNGG 2 cut(s) 315, 328
BssMI GATC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 2 cut(s) 42, 246
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 79, 88, 225
BstPAI GACNNNNGTC 3 cut(s) 66, 90, 114
BstSCI CCNGG 2 cut(s) 314, 328
BstSLI GKGCMC 1 cut(s) 535
BstUI CGCG 2 cut(s) 42, 246
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 2 cut(s) 314, 533
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 3 cut(s) 75, 99, 374
Cfr13I GGNCC 3 cut(s) 319, 531, 532
CseI GACGC 4 cut(s) 31, 56, 80, 104
CviJI RGCY 9 cut(s) 29, 36, 283, 314, 357, 374, 431, 501, 533
CviKI_1 RGCY 9 cut(s) 29, 36, 283, 314, 357, 374, 431, 501, 533
DdeI CTNAG 1 cut(s) 427
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 359, 535
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 532
EcoT38I GRGCYC 2 cut(s) 359, 535
FaiI YATR 9 cut(s) 202, 237, 353, 402, 417, 419, 441, 452, 538
FaqI GGGAC 3 cut(s) 74, 98, 332
FauI CCCGC 2 cut(s) 75, 371
FauNDI CATATG 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 2 cut(s) 359, 535
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 2 cut(s) 26, 371
GlaI GCGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 2 cut(s) 314, 533
HapII CCGG 6 cut(s) 76, 100, 315, 330, 345, 375
HgaI GACGC 4 cut(s) 31, 56, 80, 104
HhaI GCGC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 499
HpaII CCGG 6 cut(s) 76, 100, 315, 330, 345, 375
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 254, 262, 277
Hpy188III TCNNGA 5 cut(s) 18, 59, 107, 288, 495
Hpy99I CGWCG 4 cut(s) 47, 72, 96, 120
HpyAV CCTTC 2 cut(s) 124, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 88, 225
HpyF3I CTNAG 1 cut(s) 427
HspAI GCGC 1 cut(s) 246
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 362, 410
LpnPI CCDG 9 cut(s) 46, 89, 92, 113, 328, 343, 358, 388, 480
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 4 cut(s) 64, 112, 130, 495
MaeI CTAG 2 cut(s) 26, 371
MaeIII GTNAC 2 cut(s) 189, 203
MalI GATC 1 cut(s) 16
MbiI CCGCTC 1 cut(s) 219
MboI GATC 1 cut(s) 14
MboII GAAGA 3 cut(s) 59, 151, 359
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 3 cut(s) 359, 415, 535
MluCI AATT 2 cut(s) 363, 526
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 129, 166, 169, 436, 491
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 2 cut(s) 82, 431
MspI CCGG 6 cut(s) 76, 100, 315, 330, 345, 375
MspR9I CCNGG 2 cut(s) 316, 330
MvnI CGCG 2 cut(s) 42, 246
MwoI GCNNNNNNNGC 3 cut(s) 79, 88, 225
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 2 cut(s) 316, 330
NdeI CATATG 1 cut(s) 417
NdeII GATC 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 374
NlaIV GGNNCC 7 cut(s) 74, 98, 320, 343, 358, 522, 533
NmuCI GTSAC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 81
PshAI GACNNNNGTC 3 cut(s) 66, 90, 114
PspN4I GGNNCC 7 cut(s) 74, 98, 320, 343, 358, 522, 533
PspOMI GGGCCC 1 cut(s) 531
PspPI GGNCC 3 cut(s) 319, 531, 532
PsuI RGATCY 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 3 cut(s) 319, 531, 532
ScrFI CCNGG 2 cut(s) 316, 330
SduI GDGCHC 3 cut(s) 359, 415, 535
SetI ASST 8 cut(s) 135, 201, 210, 343, 433, 483, 503, 522
SfaNI GCATC 4 cut(s) 64, 112, 130, 495
SinI GGWCC 1 cut(s) 319
Sse9I AATT 2 cut(s) 363, 526
SsiI CCGC 6 cut(s) 40, 82, 127, 219, 244, 378
SspMI CTAG 2 cut(s) 26, 371
StyD4I CCNGG 2 cut(s) 314, 328
TaqI TCGA 4 cut(s) 19, 45, 146, 287
TasI AATT 2 cut(s) 363, 526
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 363
XspI CTAG 2 cut(s) 26, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.