Rh2AG061900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
5082267 .. 5082512
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG061900.1

Sequence Viewer

Length: 246 bp
ATGTGTGTTCTAGAGCACAGGAGAGACTGGGTGGCTTATGTTGTCCGCACCATCAGACTGTCGGATTTGTTATCATCTTCGGCGGCGGTGGGGGACGATCCATTGCCATTACGGCAAGTGGCTTATGAGGCCGGTTCGCATCTTCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTTTTTTCACCGGCGGGGTGACACCCAGCTCCCCTCACGGCTGCAGGGAAATAGGTCCCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.64

Weight (kDa)

5.81

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 46, 83, 86, 162, 195
AclWI GGATC 4 cut(s) 92, 157, 168, 181
AcsI RAATTY 1 cut(s) 180
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 4 cut(s) 92, 157, 168, 181
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 181, 211
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 128, 235
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 112
BisI GCNGC 2 cut(s) 84, 223
BlsI GCNGC 2 cut(s) 85, 224
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 175, 238
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 147
Bse118I RCCGGY 2 cut(s) 131, 191
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 3 cut(s) 132, 147, 192
BslFI GGGAC 2 cut(s) 107, 222
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 107, 222
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 97, 149, 173
BspACI CCGC 5 cut(s) 46, 83, 86, 162, 195
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 175, 238
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 4 cut(s) 92, 157, 168, 181
BsrDI GCAATG 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 131, 191
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 131, 191
BssMI GATC 3 cut(s) 97, 149, 173
Bst4CI ACNGT 1 cut(s) 60
BstKTI GATC 3 cut(s) 100, 152, 176
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 97, 149, 173
BstMWI GCNNNNNNNGC 2 cut(s) 112, 128
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 2 cut(s) 149, 173
BstYI RGATCY 2 cut(s) 149, 173
BsuRI GGCC 1 cut(s) 131
Cfr10I RCCGGY 2 cut(s) 131, 191
Cfr13I GGNCC 1 cut(s) 236
CviJI RGCY 5 cut(s) 35, 122, 131, 210, 222
CviKI_1 RGCY 5 cut(s) 35, 122, 131, 210, 222
DpnI GATC 3 cut(s) 99, 151, 175
DpnII GATC 3 cut(s) 97, 149, 173
Eco47I GGWCC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 236
FaiI YATR 2 cut(s) 39, 126
FaqI GGGAC 2 cut(s) 107, 222
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 84, 223
Fsp4HI GCNGC 2 cut(s) 84, 223
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 84, 223
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 132, 147, 192
HpaII CCGG 3 cut(s) 132, 147, 192
HphI GGTGA 2 cut(s) 181, 211
Hpy188I TCNGA 2 cut(s) 56, 64
Hpy188III TCNNGA 2 cut(s) 11, 239
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 128
Kzo9I GATC 3 cut(s) 97, 149, 173
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 4, 13, 145, 160, 205, 211, 220
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 99, 151, 175
MboI GATC 3 cut(s) 97, 149, 173
MboII GAAGA 2 cut(s) 69, 134
MflI RGATCY 2 cut(s) 149, 173
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 121, 225
MspI CCGG 3 cut(s) 132, 147, 192
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 112, 128
NciI CCSGG 1 cut(s) 147
NdeII GATC 3 cut(s) 97, 149, 173
NlaIV GGNNCC 2 cut(s) 175, 238
NmuCI GTSAC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 2 cut(s) 85, 224
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 175, 238
PspPI GGNCC 1 cut(s) 236
PspPPI RGGWCCY 1 cut(s) 236
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 2 cut(s) 149, 173
SatI GCNGC 2 cut(s) 84, 223
Sau3AI GATC 3 cut(s) 97, 149, 173
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 212, 238
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 1 cut(s) 236
Sse9I AATT 1 cut(s) 180
SsiI CCGC 5 cut(s) 46, 83, 86, 162, 195
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 60
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 86
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.