FvH4_4g06201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000213
Physical Location & Seq
Forward (+)
5559487 .. 5560175
689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06201.t1

Sequence Viewer

Length: 600 bp
ATGACAGGGCAAGTGGCGTGTATGGCCGACAAAGATCTCCCGGCTAGCGGGGGCTGCGGTGTTTTTGGATCCAAGATTGTTTTCGCCAGCGGCCATAAAGCCAGCGATTGTTTACCATGCCCAGATTGCAGCACCCAAGTTTATGGGTATGATATTCATGACCCCAAACAAGAGATAGTCAAGATGGAAGGGGCTTTTGGGACTTTAAACGATGGGAAAGAACAGCCGTTGGTGGTTGAGTTTGCCGGCAAACTCTACGTTCTGTCTCTTAAGGACTTTGTTAAAGGTGGTGTTTCATTTGAGGTATTTGACCCGAACAGGGTACTTGGTCGGCTCTGCCAATGTATCCTTATTGTGGGCTTGCGCTATTCGTATGCAATTCCGACGCCAAATTATTTATGTCTTGCCGAACCGGCTGCTATAGTGCGGGACCGATTTACTGCTTTGACCTCGCCGAGGCCGACCACGACCCGGAATGGAGGAGAGTCCGGTCAGAACACAGCAACAGCCAGAACACAGCTCTTGCGCTGGACCTGCCCCAGCCAGAACACAGCAACAAAAAGTTACTCTTTACCTCTCACCGGGTTCGTTCCGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.39

Weight (kDa)

8.05

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 542
AciI CCGC 4 cut(s) 48, 57, 90, 427
AclWI GGATC 2 cut(s) 63, 76
AcoI YGGCCR 2 cut(s) 24, 91
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 6 cut(s) 47, 319, 355, 456, 471, 581
AflII CTTAAG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 180, 212
AluBI AGCT 1 cut(s) 520
AluI AGCT 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 63, 76
AoxI GGCC 3 cut(s) 24, 91, 458
ApeKI GCWGC 3 cut(s) 54, 129, 416
AspLEI GCGC 2 cut(s) 366, 528
AspS9I GGNCC 2 cut(s) 430, 531
AsuC2I CCSGG 3 cut(s) 41, 472, 583
AsuHPI GGTGA 1 cut(s) 571
AsuNHI GCTAGC 1 cut(s) 44
AvaII GGWCC 2 cut(s) 430, 531
BamHI GGATCC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 41, 141, 403
BccI CCATC 2 cut(s) 178, 206
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciVI GTATCC 1 cut(s) 356
BcnI CCSGG 3 cut(s) 41, 472, 583
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 45, 598
BfmI CTRYAG 1 cut(s) 420
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 542
BfuI GTATCC 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 413
BglII AGATCT 1 cut(s) 34
BisI GCNGC 4 cut(s) 55, 91, 130, 417
BlsI GCNGC 4 cut(s) 56, 92, 131, 418
Bme1390I CCNGG 3 cut(s) 41, 472, 583
Bme18I GGWCC 2 cut(s) 430, 531
BmgT120I GGNCC 2 cut(s) 430, 531
BmiI GGNNCC 2 cut(s) 70, 431
BmrFI CCNGG 3 cut(s) 41, 472, 583
BmtI GCTAGC 1 cut(s) 48
BpuMI CCSGG 3 cut(s) 41, 472, 583
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 455
BsaWI WCCGGW 2 cut(s) 488, 592
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 319, 355, 456, 471, 581
Bse118I RCCGGY 2 cut(s) 245, 412
BseDI CCNNGG 1 cut(s) 455
BseLI CCNNNNNNNGG 6 cut(s) 47, 319, 355, 456, 471, 581
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 3 cut(s) 41, 141, 403
BseYI CCCAGC 1 cut(s) 539
BshFI GGCC 3 cut(s) 26, 93, 460
BsiSI CCGG 7 cut(s) 41, 246, 413, 472, 489, 582, 593
BslFI GGGAC 2 cut(s) 214, 443
BslI CCNNNNNNNGG 6 cut(s) 47, 319, 355, 456, 471, 581
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 214, 443
BsnI GGCC 3 cut(s) 26, 93, 460
Bsp143I GATC 2 cut(s) 34, 68
BspACI CCGC 4 cut(s) 48, 57, 90, 427
BspANI GGCC 3 cut(s) 26, 93, 460
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 70, 431
BspMI ACCTGC 1 cut(s) 542
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 2 cut(s) 63, 76
BspTI CTTAAG 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 245, 412
BssAI RCCGGY 2 cut(s) 245, 412
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 2 cut(s) 34, 68
BssNI GRCGYC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 5 cut(s) 46, 88, 103, 247, 362
BstENI CCTNNNNNAGG 1 cut(s) 454
BstHHI GCGC 2 cut(s) 366, 528
BstKTI GATC 2 cut(s) 37, 71
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 34, 68
BstMWI GCNNNNNNNGC 5 cut(s) 23, 54, 126, 413, 534
BstSCI CCNGG 3 cut(s) 39, 470, 581
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 41, 141, 403
BstX2I RGATCY 2 cut(s) 34, 68
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 2 cut(s) 34, 68
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 26, 93, 460
BveI ACCTGC 1 cut(s) 542
Cac8I GCNNGC 5 cut(s) 46, 88, 103, 247, 362
CciI TCATGA 1 cut(s) 157
CfoI GCGC 2 cut(s) 366, 528
Cfr10I RCCGGY 2 cut(s) 245, 412
Cfr13I GGNCC 2 cut(s) 430, 531
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 117, 158
CviQI GTAC 1 cut(s) 323
DpnI GATC 2 cut(s) 36, 70
DpnII GATC 2 cut(s) 34, 68
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 2 cut(s) 24, 91
Eco47I GGWCC 2 cut(s) 430, 531
EcoNI CCTNNNNNAGG 1 cut(s) 454
FaeI CATG 2 cut(s) 120, 161
FaiI YATR 9 cut(s) 23, 96, 118, 144, 150, 159, 375, 400, 422
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 2 cut(s) 214, 443
FatI CATG 2 cut(s) 116, 157
FauI CCCGC 2 cut(s) 41, 420
Fnu4HI GCNGC 4 cut(s) 55, 91, 130, 417
Fsp4HI GCNGC 4 cut(s) 55, 91, 130, 417
FspBI CTAG 2 cut(s) 45, 598
GlaI GCGC 2 cut(s) 365, 527
GluI GCNGC 4 cut(s) 55, 91, 130, 417
GsaI CCCAGC 1 cut(s) 543
HaeIII GGCC 3 cut(s) 26, 93, 460
HapII CCGG 7 cut(s) 41, 246, 413, 472, 489, 582, 593
HgaI GACGC 1 cut(s) 394
HhaI GCGC 2 cut(s) 366, 528
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 2 cut(s) 120, 161
Hin6I GCGC 2 cut(s) 364, 526
HinP1I GCGC 2 cut(s) 364, 526
HinfI GANTC 1 cut(s) 485
HpaII CCGG 7 cut(s) 41, 246, 413, 472, 489, 582, 593
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 384, 495
Hpy188III TCNNGA 2 cut(s) 158, 181
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 129, 377
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 54, 126, 413, 534
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 2 cut(s) 120, 161
HspAI GCGC 2 cut(s) 364, 526
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 34, 68
Lsp1109I GCAGC 3 cut(s) 41, 141, 403
MaeI CTAG 2 cut(s) 45, 598
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 563
MalI GATC 2 cut(s) 36, 70
MboI GATC 2 cut(s) 34, 68
MflI RGATCY 2 cut(s) 34, 68
MluCI AATT 2 cut(s) 378, 391
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 5 cut(s) 295, 450, 460, 473, 585
MroNI GCCGGC 1 cut(s) 245
MseI TTAA 3 cut(s) 206, 270, 282
MspA1I CMGCKG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 7 cut(s) 41, 246, 413, 472, 489, 582, 593
MspR9I CCNGG 3 cut(s) 41, 472, 583
MwoI GCNNNNNNNGC 5 cut(s) 23, 54, 126, 413, 534
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 3 cut(s) 41, 472, 583
NdeII GATC 2 cut(s) 34, 68
NgoMIV GCCGGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 120, 161
NlaIV GGNNCC 2 cut(s) 70, 431
NmeAIII GCCGAG 1 cut(s) 480
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 247
PkrI GCNGC 4 cut(s) 56, 92, 131, 418
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 70, 431
PspPI GGNCC 2 cut(s) 430, 531
PsuI RGATCY 2 cut(s) 34, 68
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 206, 270, 282
SatI GCNGC 4 cut(s) 55, 91, 130, 417
Sau3AI GATC 2 cut(s) 34, 68
Sau96I GGNCC 2 cut(s) 430, 531
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 3 cut(s) 41, 472, 583
SetI ASST 7 cut(s) 261, 289, 306, 452, 522, 536, 577
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 430, 531
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 378, 391
SsiI CCGC 4 cut(s) 48, 57, 90, 427
SspMI CTAG 2 cut(s) 45, 598
StyD4I CCNGG 3 cut(s) 39, 470, 581
TaiI ACGT 1 cut(s) 261
TaqII GACCGA 1 cut(s) 447
TasI AATT 2 cut(s) 378, 391
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 3 cut(s) 206, 270, 282
Tru9I TTAA 3 cut(s) 206, 270, 282
TseI GCWGC 3 cut(s) 54, 129, 416
TspDTI ATGAA 2 cut(s) 146, 285
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 430, 531
XagI CCTNNNNNAGG 1 cut(s) 454
XspI CTAG 2 cut(s) 45, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.