Rh1DG118000

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000213
Physical Location & Seq
Reverse (-)
21446298 .. 21525625
79328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG118000.1

Sequence Viewer

Length: 1302 bp
ATGTCCCCCAAAAAATATCTTAACTTAGCCGAAGCCAGCGATGGCGAAGAAAGAAGGCATCGTCTGGTTCGGCATTGCTGCCCTCTTCAGAAGCACAAGAAGCACAGGTGTGATGGATGCGTGATGAAGAAGAAGAAGAAAATAAGAGTATCAGAGAAGGTGAAGAAGACAATGAAGAAGTTGAAGCTGGAGGAGGAGGAGGCTAAGAAGTCACTCTACATATGTTTCGTTGAACAACGCGAGGGTGGGAGCGTCTCTATTGTTGTTCGTACCATCAAATTATCCGACTTGTTATCCTCCGATGAAGAATTGCGATTGCGGCAAGTGGCTTATAAGGCCGGGGAAGATGTTCCCGATTTTGTTGGTTGTGCTGTTTTCGGCTCCCAAATCATTTTCGCCGGTGGCGTGAGCCCCAGCTTGGGTTCCGGTGACAGATTTCCGCCAATAAGTTCTGAACTCTGGAATAGAGATGTTCATGCCTTCGAGGTTCATGACAATGTTTTCAGGAAGATGGATGCGACTTTACAGAGAGGGAAGTTATCCCCTATGATGGTGGAGCTGGGCGGGAAAGTGTACGCTCTTTCCTATGAGCTGATCCCTGATCCTCCATCATTCGAGGTATTTGACCCTAAAATAGGCCTGTGGAAGGGTTTGCCCCAACCTCCATATTTCCAACCCGGATATCGATATGACTCTCCTGCTTCCTTCTTTTATGCAATTGCCGGCACCAAGATGTTTGTGTCCCATGACAAATGTCCGGTGTTCTGCTTTGATGTGGCACACCCAGACAGAGAATGGAGACTAGTCCCTACTATGTGTGGCGGCGGCCCTTTTCCTTTTATGGGCAACGCCTTTGTCCTGGACCTGCCGGAGCACCATGATGACAAGAAGAAGATCATGTTTGCTTATATTCATGATACGTGGCGGCTGGGAGTTTATCTTTTTTCCTTGGAGGAAGGTCAGGAATCCATTGCACCGATTGGTTATTTGAAGCTGCCATGGTGGCCTTATGAATTGGGTTCGGCAGCAGGCTGTGATTTTGTCCACATAGGAGGTCAGAAAGCCTGCATTCTTATCACCCAATTCAACCTTCCTTATGGTGAAGGACCTGACTATAAGCCCGGGACTTATAAGAAGCGGGGGGTTGCGATACCATTTCAATTTCAAGTTGATATCACTAAGGTGGACAGGGACGAGAAGAATTGTTTCACTCTCCAATTCATGACTCCTCGCACCTTCGAATTCCAGACCAACCCATCCACTTTTCCTCTACCTTTTACGGTTGGCTGCTTTCTGCTGTAA

Protein Analysis

433

Amino Acids

49.24

Weight (kDa)

8.53

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 175 - 285 4.7e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 333, 1131
Acc36I ACCTGC 1 cut(s) 873
AccB1I GGYRCC 1 cut(s) 725
AccII CGCG 1 cut(s) 240
AciI CCGC 7 cut(s) 319, 440, 564, 822, 825, 925, 1138
AclWI GGATC 2 cut(s) 589, 596
AcsI RAATTY 1 cut(s) 1241
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 271, 575
AfiI CCNNNNNNNGG 6 cut(s) 418, 419, 550, 635, 646, 842
AgsI TTSAA 6 cut(s) 184, 233, 991, 1087, 1160, 1166
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 1 cut(s) 858
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AleI CACNNNNGTG 2 cut(s) 108, 1181
AluBI AGCT 5 cut(s) 187, 417, 559, 592, 994
AluI AGCT 5 cut(s) 187, 417, 559, 592, 994
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 259, 793
AlwI GGATC 2 cut(s) 589, 596
Ama87I CYCGRG 1 cut(s) 1121
AoxI GGCC 4 cut(s) 336, 637, 826, 1004
ApeKI GCWGC 4 cut(s) 78, 994, 1025, 1287
ApoI RAATTY 1 cut(s) 1241
Asp700I GAANNNNTTC 2 cut(s) 348, 1205
AspS9I GGNCC 3 cut(s) 827, 862, 1106
AsuC2I CCSGG 4 cut(s) 340, 678, 1122, 1123
AsuHPI GGTGA 4 cut(s) 172, 440, 1069, 1112
AsuII TTCGAA 1 cut(s) 1239
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 862, 1106
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 4 cut(s) 65, 981, 1037, 1274
BccI CCATC 7 cut(s) 35, 107, 281, 505, 544, 616, 1264
BciT130I CCWGG 1 cut(s) 860
BcnI CCSGG 4 cut(s) 340, 678, 1122, 1123
BcoDI GTCTC 2 cut(s) 259, 793
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 873
BglI GCCNNNNNGGC 1 cut(s) 1003
BisI GCNGC 8 cut(s) 79, 320, 823, 826, 926, 995, 1026, 1288
BlsI GCNGC 8 cut(s) 80, 321, 824, 827, 927, 996, 1027, 1289
Bme1390I CCNGG 5 cut(s) 340, 678, 860, 1122, 1123
Bme18I GGWCC 2 cut(s) 862, 1106
BmeT110I CYCGRG 1 cut(s) 1121
BmgT120I GGNCC 3 cut(s) 827, 862, 1106
BmiI GGNNCC 3 cut(s) 382, 424, 727
BmrFI CCNGG 5 cut(s) 340, 678, 860, 1122, 1123
BmsI GCATC 3 cut(s) 67, 107, 505
BoxI GACNNNNGTC 1 cut(s) 753
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 1239
BpuMI CCSGG 4 cut(s) 340, 678, 1122, 1123
Bsa29I ATCGAT 1 cut(s) 685
BsaAI YACGTR 1 cut(s) 921
BsaJI CCNNGG 4 cut(s) 339, 948, 998, 1121
BsaWI WCCGGW 2 cut(s) 425, 757
Bsc4I CCNNNNNNNGG 6 cut(s) 418, 419, 550, 635, 646, 842
Bse118I RCCGGY 2 cut(s) 398, 722
Bse3DI GCAATG 2 cut(s) 73, 969
BseBI CCWGG 1 cut(s) 860
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 4 cut(s) 339, 948, 998, 1121
BseGI GGATG 3 cut(s) 122, 520, 1256
BseLI CCNNNNNNNGG 6 cut(s) 418, 419, 550, 635, 646, 842
BseMI GCAATG 2 cut(s) 73, 969
BseRI GAGGAG 4 cut(s) 206, 209, 212, 1218
BseXI GCAGC 4 cut(s) 65, 981, 1037, 1274
BseYI CCCAGC 3 cut(s) 413, 559, 928
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 338, 639, 828, 1006
BshNI GGYRCC 1 cut(s) 725
BshVI ATCGAT 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 8 cut(s) 339, 399, 426, 678, 723, 758, 869, 1122
BslFI GGGAC 4 cut(s) 727, 791, 1138, 1205
BslI CCNNNNNNNGG 6 cut(s) 418, 419, 550, 635, 646, 842
BsmAI GTCTC 2 cut(s) 259, 793
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 4 cut(s) 727, 791, 1138, 1205
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 4 cut(s) 338, 639, 828, 1006
BsoBI CYCGRG 1 cut(s) 1121
Bsp119I TTCGAA 1 cut(s) 1239
Bsp1286I GDGCHC 2 cut(s) 413, 876
Bsp143I GATC 3 cut(s) 594, 601, 894
Bsp19I CCATGG 1 cut(s) 998
BspACI CCGC 7 cut(s) 319, 440, 564, 822, 825, 925, 1138
BspANI GGCC 4 cut(s) 338, 639, 828, 1006
BspDI ATCGAT 1 cut(s) 685
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 3 cut(s) 490, 913, 1221
BspLI GGNNCC 3 cut(s) 382, 424, 727
BspMI ACCTGC 1 cut(s) 873
BspPI GGATC 2 cut(s) 589, 596
BspT104I TTCGAA 1 cut(s) 1239
BspT107I GGYRCC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 73, 969
BsrFI RCCGGY 2 cut(s) 398, 722
BssAI RCCGGY 2 cut(s) 398, 722
BssECI CCNNGG 4 cut(s) 339, 948, 998, 1121
BssMI GATC 3 cut(s) 594, 601, 894
BssT1I CCWWGG 2 cut(s) 948, 998
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 1 cut(s) 1282
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 921
BstBI TTCGAA 1 cut(s) 1239
BstC8I GCNNGC 4 cut(s) 37, 724, 1030, 1066
BstDEI CTNAG 3 cut(s) 25, 204, 1179
BstDSI CCRYGG 1 cut(s) 998
BstENI CCTNNNNNAGG 2 cut(s) 633, 644
BstF5I GGATG 3 cut(s) 122, 520, 1256
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 3 cut(s) 597, 604, 897
BstMAI GTCTC 2 cut(s) 259, 793
BstMBI GATC 3 cut(s) 594, 601, 894
BstMWI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 1003
BstNI CCWGG 1 cut(s) 860
BstPAI GACNNNNGTC 1 cut(s) 753
BstSCI CCNGG 5 cut(s) 338, 676, 858, 1120, 1121
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 65, 981, 1037, 1274
BstV2I GAAGAC 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 4 cut(s) 338, 639, 828, 1006
BsuTUI ATCGAT 1 cut(s) 685
BtgI CCRYGG 1 cut(s) 998
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 122, 520, 1256
BveI ACCTGC 1 cut(s) 873
Cac8I GCNNGC 4 cut(s) 37, 724, 1030, 1066
CciI TCATGA 3 cut(s) 490, 913, 1221
Cfr10I RCCGGY 2 cut(s) 398, 722
Cfr13I GGNCC 3 cut(s) 827, 862, 1106
Cfr9I CCCGGG 1 cut(s) 1121
ClaI ATCGAT 1 cut(s) 685
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 270, 574
CviAII CATG 8 cut(s) 476, 491, 746, 878, 898, 914, 999, 1222
CviQI GTAC 2 cut(s) 270, 574
DdeI CTNAG 3 cut(s) 25, 204, 1179
DpnI GATC 3 cut(s) 596, 603, 896
DpnII GATC 3 cut(s) 594, 601, 894
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 948, 998
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 413
Eco32I GATATC 2 cut(s) 683, 1174
Eco47I GGWCC 2 cut(s) 862, 1106
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 1121
EcoNI CCTNNNNNAGG 2 cut(s) 633, 644
EcoO109I RGGNCCY 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 2 cut(s) 683, 1174
EcoT14I CCWWGG 2 cut(s) 948, 998
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 948, 998
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 8 cut(s) 479, 494, 749, 881, 901, 917, 1002, 1225
FaqI GGGAC 4 cut(s) 727, 791, 1138, 1205
FatI CATG 8 cut(s) 475, 490, 745, 877, 897, 913, 998, 1221
FauI CCCGC 2 cut(s) 557, 1131
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 8 cut(s) 79, 320, 823, 826, 926, 995, 1026, 1288
FokI GGATG 3 cut(s) 129, 527, 1243
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 8 cut(s) 79, 320, 823, 826, 926, 995, 1026, 1288
FspBI CTAG 1 cut(s) 803
GluI GCNGC 8 cut(s) 79, 320, 823, 826, 926, 995, 1026, 1288
GsaI CCCAGC 3 cut(s) 417, 563, 932
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 4 cut(s) 338, 639, 828, 1006
HapII CCGG 8 cut(s) 339, 399, 426, 678, 723, 758, 869, 1122
HgaI GACGC 1 cut(s) 241
Hin1II CATG 8 cut(s) 479, 494, 749, 881, 901, 917, 1002, 1225
HinfI GANTC 3 cut(s) 692, 965, 1225
HpaII CCGG 8 cut(s) 339, 399, 426, 678, 723, 758, 869, 1122
HphI GGTGA 4 cut(s) 172, 440, 1069, 1112
Hpy166II GTNNAC 3 cut(s) 574, 1045, 1186
Hpy188I TCNGA 6 cut(s) 90, 154, 286, 301, 454, 1059
Hpy188III TCNNGA 8 cut(s) 353, 460, 491, 505, 914, 962, 1222, 1246
Hpy8I GTNNAC 3 cut(s) 574, 1045, 1186
HpyAV CCTTC 9 cut(s) 48, 151, 490, 640, 715, 950, 1097, 1100, 1246
HpyCH4III ACNGT 1 cut(s) 1282
HpyCH4IV ACGT 1 cut(s) 920
HpyCH4V TGCA 3 cut(s) 716, 974, 1068
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 1003
HpyF3I CTNAG 3 cut(s) 25, 204, 1179
HpySE526I ACGT 1 cut(s) 920
Hsp92II CATG 8 cut(s) 479, 494, 749, 881, 901, 917, 1002, 1225
KroI GCCGGC 1 cut(s) 722
KroNI GCCGGC 1 cut(s) 724
Kzo9I GATC 3 cut(s) 594, 601, 894
LmnI GCTCC 4 cut(s) 249, 386, 556, 871
Lsp1109I GCAGC 4 cut(s) 65, 981, 1037, 1274
LweI GCATC 3 cut(s) 67, 107, 505
MaeI CTAG 1 cut(s) 803
MaeII ACGT 1 cut(s) 920
MaeIII GTNAC 2 cut(s) 210, 428
MalI GATC 3 cut(s) 596, 603, 896
MboI GATC 3 cut(s) 594, 601, 894
MfeI CAATTG 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 413, 876
MluCI AATT 9 cut(s) 278, 308, 717, 1013, 1082, 1160, 1201, 1217, 1241
MlyI GAGTC 2 cut(s) 686, 1219
MmeI TCCRAC 2 cut(s) 309, 697
MroNI GCCGGC 1 cut(s) 722
MroXI GAANNNNTTC 2 cut(s) 348, 1205
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 5 cut(s) 108, 495, 731, 879, 1181
MspI CCGG 8 cut(s) 339, 399, 426, 678, 723, 758, 869, 1122
MspR9I CCNGG 5 cut(s) 340, 678, 860, 1122, 1123
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 1 cut(s) 860
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 100, 319, 335, 1003
NaeI GCCGGC 1 cut(s) 724
NciI CCSGG 4 cut(s) 340, 678, 1122, 1123
NcoI CCATGG 1 cut(s) 998
NdeI CATATG 1 cut(s) 221
NdeII GATC 3 cut(s) 594, 601, 894
NgoMIV GCCGGC 1 cut(s) 722
NlaIII CATG 8 cut(s) 479, 494, 749, 881, 901, 917, 1002, 1225
NlaIV GGNNCC 3 cut(s) 382, 424, 727
NmuCI GTSAC 2 cut(s) 210, 428
NspV TTCGAA 1 cut(s) 1239
OliI CACNNNNGTG 2 cut(s) 108, 1181
PagI TCATGA 3 cut(s) 490, 913, 1221
PceI AGGCCT 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 1068
PdiI GCCGGC 1 cut(s) 724
PdmI GAANNNNTTC 2 cut(s) 348, 1205
PfeI GAWTC 1 cut(s) 965
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 8 cut(s) 80, 321, 824, 827, 927, 996, 1027, 1289
PleI GAGTC 2 cut(s) 686, 1219
PpsI GAGTC 2 cut(s) 686, 1219
Ppu21I YACGTR 1 cut(s) 921
PpuMI RGGWCCY 1 cut(s) 1106
PshAI GACNNNNGTC 1 cut(s) 753
PsiI TTATAA 2 cut(s) 333, 1131
Psp5II RGGWCCY 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 3 cut(s) 413, 559, 928
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 3 cut(s) 382, 424, 727
PspPI GGNCC 3 cut(s) 827, 862, 1106
PspPPI RGGWCCY 1 cut(s) 1106
RsaI GTAC 2 cut(s) 271, 575
RsaNI GTAC 2 cut(s) 270, 574
RseI CAYNNNNRTG 5 cut(s) 108, 495, 731, 879, 1181
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 8 cut(s) 79, 320, 823, 826, 926, 995, 1026, 1288
Sau3AI GATC 3 cut(s) 594, 601, 894
Sau96I GGNCC 3 cut(s) 827, 862, 1106
SchI GAGTC 2 cut(s) 686, 1219
ScrFI CCNGG 5 cut(s) 340, 678, 860, 1122, 1123
SduI GDGCHC 2 cut(s) 413, 876
SfaNI GCATC 3 cut(s) 67, 107, 505
SfuI TTCGAA 1 cut(s) 1239
SgrAI CRCCGGYG 1 cut(s) 398
SinI GGWCC 2 cut(s) 862, 1106
SmaI CCCGGG 1 cut(s) 1123
SmiMI CAYNNNNRTG 5 cut(s) 108, 495, 731, 879, 1181
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 9 cut(s) 278, 308, 717, 1013, 1082, 1160, 1201, 1217, 1241
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 7 cut(s) 319, 440, 564, 822, 825, 925, 1138
SspMI CTAG 1 cut(s) 803
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 5 cut(s) 338, 676, 858, 1120, 1121
StyI CCWWGG 2 cut(s) 948, 998
TaaI ACNGT 1 cut(s) 1282
TaiI ACGT 1 cut(s) 923
TaqI TCGA 4 cut(s) 483, 615, 685, 1239
TasI AATT 9 cut(s) 278, 308, 717, 1013, 1082, 1160, 1201, 1217, 1241
TauI GCSGC 4 cut(s) 322, 825, 828, 928
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 2 cut(s) 210, 428
TseI GCWGC 4 cut(s) 78, 994, 1025, 1287
Tsp45I GTSAC 2 cut(s) 210, 428
TspDTI ATGAA 8 cut(s) 140, 188, 318, 464, 479, 902, 1026, 1210
TspMI CCCGGG 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 862, 1106
XagI CCTNNNNNAGG 2 cut(s) 633, 644
XapI RAATTY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 792
XmaI CCCGGG 1 cut(s) 1121
XmnI GAANNNNTTC 2 cut(s) 348, 1205
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.