Rh2DG362400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000213
Physical Location & Seq
Reverse (-)
51252908 .. 51255260
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG362400.1

Sequence Viewer

Length: 429 bp
ATGTCCCCCAAAAGATATGTTACCCTAGCCACCGGCAACGGCGAAGAAGAGAGGCATCATCGTCGCCGGCATCGGCATGACCGTGTACATCGGCATCGGCATCGGCATCGGCGTCGGCGTGACGGTGGACATTGGCACAAGTCGCAGGAGCATAGGCGTGATGGATGGGAGCCGATGAAGAAGCAGAGGATGGAGAAGGTGAAGAAGACATCGAAGAAGTTAACGTTTGAGTTGGAGGAGGAGGCTGCTAACAAGTCACTCTACATATGTTTCCTGGAACACAGGAGAGATTGGGTTGCTTATGTTATCCGCGCCATCAAATTGTCCGATTTGTTATCATCCGGCGAGCGATTGAGATTACGGCAAGTGGGTTTTGCGGCCGGGGATCATCTCCCCGGAACTAGCGAGTGTGATCTGCATAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

17.15

Weight (kDa)

10.46

Isoelectric Point (pI)

82.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AciI CCGC 2 cut(s) 310, 377
AclI AACGTT 1 cut(s) 224
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 273
AlwI GGATC 1 cut(s) 393
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 314
AsuC2I CCSGG 2 cut(s) 382, 396
AsuHPI GGTGA 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 232
BccI CCATC 4 cut(s) 155, 159, 184, 323
BceAI ACGGC 2 cut(s) 55, 377
BcgI CGANNNNNNTGC 8 cut(s) 44, 78, 83, 89, 95, 117, 123, 129
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 2 cut(s) 382, 396
BfaI CTAG 2 cut(s) 26, 402
BisI GCNGC 2 cut(s) 246, 378
BlsI GCNGC 2 cut(s) 247, 379
Bme1390I CCNGG 3 cut(s) 275, 382, 396
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 275, 382, 396
BmsI GCATC 5 cut(s) 64, 79, 103, 109, 115
BpiI GAAGAC 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 382, 396
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 381, 394
Bse118I RCCGGY 2 cut(s) 32, 66
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 381, 394
BseGI GGATG 3 cut(s) 170, 195, 338
BseRI GAGGAG 2 cut(s) 251, 254
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 381
BsiSI CCGG 5 cut(s) 33, 67, 342, 381, 396
BsnI GGCC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 385, 412
BspACI CCGC 2 cut(s) 310, 377
BspANI GGCC 1 cut(s) 380
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 393
BsrFI RCCGGY 2 cut(s) 32, 66
BsrGI TGTACA 1 cut(s) 85
BssAI RCCGGY 2 cut(s) 32, 66
BssECI CCNNGG 2 cut(s) 381, 394
BssMI GATC 2 cut(s) 385, 412
BssNI GRCGYC 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 83, 125
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 68, 347
BstF5I GGATG 3 cut(s) 170, 195, 338
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 388, 415
BstMBI GATC 2 cut(s) 385, 412
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 273, 380, 394
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 212
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 3 cut(s) 170, 195, 338
Cac8I GCNNGC 2 cut(s) 68, 347
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 2 cut(s) 32, 66
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 29, 172, 245, 380
CviKI_1 RGCY 4 cut(s) 29, 172, 245, 380
CviQI GTAC 1 cut(s) 86
DpnI GATC 2 cut(s) 387, 414
DpnII GATC 2 cut(s) 385, 412
EaeI YGGCCR 1 cut(s) 378
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 378
Eco52I CGGCCG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 80
FaiI YATR 9 cut(s) 18, 78, 153, 266, 268, 303, 420, 425, 427
FatI CATG 1 cut(s) 76
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 246, 378
FokI GGATG 3 cut(s) 177, 202, 325
Fsp4HI GCNGC 2 cut(s) 246, 378
FspBI CTAG 2 cut(s) 26, 402
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 246, 378
HaeIII GGCC 1 cut(s) 380
HapII CCGG 5 cut(s) 33, 67, 342, 381, 396
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 5 cut(s) 33, 67, 342, 381, 396
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 3 cut(s) 86, 128, 222
Hpy188I TCNGA 1 cut(s) 328
Hpy8I GTNNAC 3 cut(s) 86, 128, 222
Hpy99I CGWCG 2 cut(s) 66, 117
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 83, 125
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 312
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 385, 412
LmnI GCTCC 2 cut(s) 148, 169
LpnPI CCDG 9 cut(s) 46, 80, 131, 260, 268, 287, 355, 394, 409
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 5 cut(s) 64, 79, 103, 109, 115
MaeI CTAG 2 cut(s) 26, 402
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 19, 119, 255
MalI GATC 2 cut(s) 387, 414
MboI GATC 2 cut(s) 385, 412
MboII GAAGA 6 cut(s) 56, 59, 190, 214, 217, 226
MluCI AATT 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 5 cut(s) 45, 180, 229, 232, 235
MroNI GCCGGC 1 cut(s) 66
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 3 cut(s) 75, 81, 156
MspI CCGG 5 cut(s) 33, 67, 342, 381, 396
MspR9I CCNGG 3 cut(s) 275, 382, 396
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 142
NaeI GCCGGC 1 cut(s) 68
NciI CCSGG 2 cut(s) 382, 396
NdeI CATATG 1 cut(s) 266
NdeII GATC 2 cut(s) 385, 412
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 119, 255
PcsI WCGNNNNNNNCGW 3 cut(s) 79, 109, 115
PdiI GCCGGC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 2 cut(s) 247, 379
Psp1406I AACGTT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 171
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 3 cut(s) 75, 81, 156
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 246, 378
Sau3AI GATC 2 cut(s) 385, 412
ScrFI CCNGG 3 cut(s) 275, 382, 396
SetI ASST 2 cut(s) 201, 227
SfaNI GCATC 5 cut(s) 64, 79, 103, 109, 115
SmiMI CAYNNNNRTG 3 cut(s) 75, 81, 156
Sse9I AATT 1 cut(s) 320
SsiI CCGC 2 cut(s) 310, 377
SspMI CTAG 2 cut(s) 26, 402
StyD4I CCNGG 3 cut(s) 273, 380, 394
TaaI ACNGT 2 cut(s) 83, 125
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseFI GTSAC 2 cut(s) 119, 255
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 119, 255
TspDTI ATGAA 1 cut(s) 191
XspI CTAG 2 cut(s) 26, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.