Rw2G004710

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000213
Physical Location & Seq
Reverse (-)
4447629 .. 4450817
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004710.1

Sequence Viewer

Length: 792 bp
ATGTGTATTCTAGAGCACGGGACGGACAGGGCGGCTTATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCATCTTCGGCGGTGGGGGACTATCCATTGCCATTGCGGCAAGTGGCTTATGAGGCCGGTTCGCATCTCCCCGGATCTCCTCCATTTTTCCAAGTTGGCTCTCCATATTATGAACATGCCAACTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCCCATGAAGAATGTCATGTGTTCTGCTTTGACGTCACACATCCAGACAGAGATTGGAGACTGGTTTCTACTATGTGTCGGGGTGGCCCTTTCCCCTTTGATAACAAAGTTGCATTAGTCCTGGACCTGCAGGGGAACGATGACAAGAAAATAATGTTTGCCTACAGTCATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAACTATCACAAAAATCGGTGATCTGAGGATGCCAGTGTTGCCTGATGAATTGGGTTTGCCACAGCGCTGTGAATTTTTGCACATTGGAGGTCAGAAAGCGTGCCTTGTTGTCACCGAAATTGGCGTCCGTGCTGAAGACGCTCCTGCTTATAATGAGCTTGGTACTCATAAGAGACACTGTGCAGTCATTCCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCATCCCATCCACTCTTCCTGAACCTGAAACGGTTGGTTGCTTTCTATTGTAA

Protein Analysis

263

Amino Acids

29.68

Weight (kDa)

5.63

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 4 cut(s) 32, 46, 83, 109
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 3 cut(s) 264, 412, 576
AfaI GTAC 1 cut(s) 616
AfeI AGCGCT 1 cut(s) 518
AgsI TTSAA 2 cut(s) 650, 656
AjnI CCWGG 1 cut(s) 351
AleI CACNNNNGTG 1 cut(s) 671
AluBI AGCT 2 cut(s) 610, 726
AluI AGCT 2 cut(s) 610, 726
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 283, 619
AlwI GGATC 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 518
AoxI GGCC 2 cut(s) 126, 316
ApeKI GCWGC 1 cut(s) 723
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 561, 593
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 317, 355
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 482, 556, 658
AsuII TTCGAA 1 cut(s) 729
AvaII GGWCC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 735
BccI CCATC 3 cut(s) 59, 749, 754
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 283, 619
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 2 cut(s) 359, 394
BfoI RGCGCY 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 109
BglII AGATCT 1 cut(s) 222
BisI GCNGC 3 cut(s) 33, 110, 724
BlsI GCNGC 3 cut(s) 34, 111, 725
Bme1390I CCNGG 2 cut(s) 144, 353
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 317, 355
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 144, 353
BmsI GCATC 2 cut(s) 145, 471
BpiI GAAGAC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 729
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 3 cut(s) 264, 412, 576
BsaJI CCNNGG 3 cut(s) 142, 407, 669
Bse118I RCCGGY 2 cut(s) 128, 212
Bse1I ACTGG 2 cut(s) 297, 485
Bse3DI GCAATG 2 cut(s) 98, 104
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 142, 407, 669
BseGI GGATG 4 cut(s) 271, 486, 741, 746
BseMI GCAATG 2 cut(s) 98, 104
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 297, 485
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 735
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 2 cut(s) 128, 318
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 3 cut(s) 129, 144, 213
BslFI GGGAC 2 cut(s) 34, 104
BsmAI GTCTC 2 cut(s) 283, 619
BsmFI GGGAC 2 cut(s) 34, 104
BsnI GGCC 2 cut(s) 128, 318
Bsp119I TTCGAA 1 cut(s) 729
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 146, 222, 472
BspACI CCGC 4 cut(s) 32, 46, 83, 109
BspANI GGCC 2 cut(s) 128, 318
BspCNI CTCAG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 98, 104
BsrFI RCCGGY 2 cut(s) 128, 212
BsrI ACTGG 2 cut(s) 297, 485
BssAI RCCGGY 2 cut(s) 128, 212
BssECI CCNNGG 3 cut(s) 142, 407, 669
BssMI GATC 3 cut(s) 146, 222, 472
BssNI GRCGYC 3 cut(s) 264, 412, 576
BssT1I CCWWGG 2 cut(s) 407, 669
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 4 cut(s) 60, 398, 632, 772
Bst6I CTCTTC 2 cut(s) 723, 759
BstACI GRCGYC 3 cut(s) 264, 412, 576
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 214, 553
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 4 cut(s) 271, 486, 741, 746
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 3 cut(s) 149, 225, 475
BstMAI GTCTC 2 cut(s) 283, 619
BstMBI GATC 3 cut(s) 146, 222, 472
BstMWI GCNNNNNNNGC 4 cut(s) 109, 125, 490, 590
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 142, 351
BstSFI CTRYAG 2 cut(s) 359, 394
BstV1I GCAGC 1 cut(s) 735
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 146, 222
BstYI RGATCY 2 cut(s) 146, 222
BsuRI GGCC 2 cut(s) 128, 318
BtsCI GGATG 4 cut(s) 271, 486, 741, 746
BtsIMutI CAGTG 2 cut(s) 492, 628
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 214, 553
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 519
Cfr10I RCCGGY 2 cut(s) 128, 212
Cfr13I GGNCC 2 cut(s) 317, 355
CseI GACGC 3 cut(s) 401, 565, 599
Csp6I GTAC 1 cut(s) 615
CviAII CATG 5 cut(s) 188, 236, 248, 401, 712
CviJI RGCY 8 cut(s) 35, 119, 128, 171, 318, 406, 610, 726
CviKI_1 RGCY 8 cut(s) 35, 119, 128, 171, 318, 406, 610, 726
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 1 cut(s) 476
DpnI GATC 3 cut(s) 148, 224, 474
DpnII GATC 3 cut(s) 146, 222, 472
Eam1104I CTCTTC 2 cut(s) 723, 759
EarI CTCTTC 2 cut(s) 723, 759
Eco130I CCWWGG 2 cut(s) 407, 669
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 355
Eco47III AGCGCT 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 407, 669
ErhI CCWWGG 2 cut(s) 407, 669
FaeI CATG 5 cut(s) 191, 239, 251, 404, 715
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 2 cut(s) 34, 104
FatI CATG 5 cut(s) 187, 235, 247, 400, 711
Fnu4HI GCNGC 3 cut(s) 33, 110, 724
FokI GGATG 4 cut(s) 258, 493, 728, 733
Fsp4HI GCNGC 3 cut(s) 33, 110, 724
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 518
GluI GCNGC 3 cut(s) 33, 110, 724
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 2 cut(s) 128, 318
HapII CCGG 3 cut(s) 129, 144, 213
HgaI GACGC 3 cut(s) 401, 565, 599
HhaI GCGC 1 cut(s) 519
Hin1I GRCGYC 3 cut(s) 264, 412, 576
Hin1II CATG 5 cut(s) 191, 239, 251, 404, 715
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HpaII CCGG 3 cut(s) 129, 144, 213
HphI GGTGA 3 cut(s) 482, 556, 658
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 4 cut(s) 64, 442, 477, 546
Hpy188III TCNNGA 4 cut(s) 11, 275, 401, 758
Hpy8I GTNNAC 1 cut(s) 676
HpyCH4III ACNGT 4 cut(s) 60, 398, 632, 772
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 344, 361, 532, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 125, 490, 590
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 3 cut(s) 264, 412, 576
Hsp92II CATG 5 cut(s) 191, 239, 251, 404, 715
HspAI GCGC 1 cut(s) 517
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 146, 222, 472
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 735
LweI GCATC 2 cut(s) 145, 471
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 265, 562
MalI GATC 3 cut(s) 148, 224, 474
MboI GATC 3 cut(s) 146, 222, 472
MboII GAAGA 5 cut(s) 69, 251, 599, 710, 746
MflI RGATCY 2 cut(s) 146, 222
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 6 cut(s) 500, 524, 570, 650, 691, 707
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 6 cut(s) 118, 162, 241, 471, 533, 726
MroNI GCCGGC 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 671
MspI CCGG 3 cut(s) 129, 144, 213
MspR9I CCNGG 2 cut(s) 144, 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 4 cut(s) 109, 125, 490, 590
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 144
NdeII GATC 3 cut(s) 146, 222, 472
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 5 cut(s) 191, 239, 251, 404, 715
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 265, 562
NspI RCATGY 1 cut(s) 191
NspV TTCGAA 1 cut(s) 729
OliI CACNNNNGTG 1 cut(s) 671
PagI TCATGA 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 3 cut(s) 34, 111, 725
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 317, 355
PstI CTGCAG 1 cut(s) 363
PsuI RGATCY 2 cut(s) 146, 222
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 1 cut(s) 671
SatI GCNGC 3 cut(s) 33, 110, 724
Sau3AI GATC 3 cut(s) 146, 222, 472
Sau96I GGNCC 2 cut(s) 317, 355
SbfI CCTGCAGG 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 144, 353
SdaI CCTGCAGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 267, 360, 544, 612, 675, 728, 766
SfaNI GCATC 2 cut(s) 145, 471
SfcI CTRYAG 2 cut(s) 359, 394
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 671
Sse8387I CCTGCAGG 1 cut(s) 363
Sse9I AATT 6 cut(s) 500, 524, 570, 650, 691, 707
SsiI CCGC 4 cut(s) 32, 46, 83, 109
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 142, 351
StyI CCWWGG 2 cut(s) 407, 669
TaaI ACNGT 4 cut(s) 60, 398, 632, 772
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 729
TasI AATT 6 cut(s) 500, 524, 570, 650, 691, 707
TauI GCSGC 2 cut(s) 35, 112
TscAI CASTG 2 cut(s) 492, 635
TseFI GTSAC 2 cut(s) 265, 562
TseI GCWGC 1 cut(s) 723
Tsp45I GTSAC 2 cut(s) 265, 562
TspDTI ATGAA 4 cut(s) 198, 252, 513, 700
TspGWI ACGGA 2 cut(s) 38, 569
TspRI CASTG 2 cut(s) 492, 635
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 524
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XspI CTAG 1 cut(s) 11
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.