Rw5G012660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000213
Physical Location & Seq
Forward (+)
14943817 .. 14945955
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012660.1

Sequence Viewer

Length: 411 bp
ATGTCCCCCAAAATGTCTCAAAGTAACCTAGCCACCATTGACGGCGAAGATGAAAAGCATCATCGGTGGCATGAGGGTCATAAGCGGCAGAGGCCTAATAGAATGGAGAAGAAGATGAAGAAGAGGAAGACGCAAGTGGCTTACAAGACAGGCTCGGATCTCCCCGGTTCTGTGGGTTGTGGTGTTTGGGGCTCCCAAATTGTTTTCGCCGGCAGCTTGAAACCCAGCGTCCCTTACGGCATAGGGGCATCCAAATTAGGCCCAGTTGTTTGGCACAGGGATGTTTATTGCTTCGAAACGCAGCAGCAGCAGCAGCTAGAGGACGAGGACGAGGACAATTTAATCAGGAAGATGGATGCTAATTTTACTCTACTGCAAGCCAAATTTAGCCCTTACATTGTGGAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.52

Weight (kDa)

8.87

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 383
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 2 cut(s) 216, 316
AluI AGCT 2 cut(s) 216, 316
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 92, 259
ApeKI GCWGC 6 cut(s) 213, 301, 304, 307, 310, 313
ApoI RAATTY 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 294
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 6 cut(s) 225, 313, 316, 319, 322, 325
BccI CCATC 1 cut(s) 346
BceAI ACGGC 2 cut(s) 58, 253
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 29, 317
BisI GCNGC 7 cut(s) 86, 214, 302, 305, 308, 311, 314
BlsI GCNGC 7 cut(s) 87, 215, 303, 306, 309, 312, 315
Bme1390I CCNGG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 3 cut(s) 67, 257, 346
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 3 cut(s) 248, 286, 361
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 6 cut(s) 225, 313, 316, 319, 322, 325
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 2 cut(s) 94, 261
BsiSI CCGG 2 cut(s) 165, 210
BslFI GGGAC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 94, 261
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 94, 261
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 211, 378
BstF5I GGATG 3 cut(s) 248, 286, 361
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 91, 307, 310, 313
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 6 cut(s) 225, 313, 316, 319, 322, 325
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 270
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 94, 261
BtsCI GGATG 3 cut(s) 248, 286, 361
Cac8I GCNNGC 2 cut(s) 211, 378
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 2 cut(s) 139, 217
CviAII CATG 1 cut(s) 71
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 194
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 81, 242
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 7 cut(s) 86, 214, 302, 305, 308, 311, 314
FokI GGATG 3 cut(s) 235, 293, 368
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 7 cut(s) 86, 214, 302, 305, 308, 311, 314
FspBI CTAG 2 cut(s) 29, 317
GluI GCNGC 7 cut(s) 86, 214, 302, 305, 308, 311, 314
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 94, 261
HapII CCGG 2 cut(s) 165, 210
HgaI GACGC 2 cut(s) 139, 217
Hin1II CATG 1 cut(s) 74
HpaII CCGG 2 cut(s) 165, 210
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 307, 310, 313
Hsp92II CATG 1 cut(s) 74
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 7 cut(s) 135, 178, 223, 238, 262, 276, 331
Lsp1109I GCAGC 6 cut(s) 225, 313, 316, 319, 322, 325
LweI GCATC 3 cut(s) 67, 257, 346
MaeI CTAG 2 cut(s) 29, 317
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 7 cut(s) 59, 121, 124, 130, 133, 139, 361
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 5 cut(s) 198, 254, 337, 361, 383
MnlI CCTC 7 cut(s) 67, 84, 117, 313, 319, 325, 397
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 165, 210
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 91, 307, 310, 313
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 165
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 193
NspV TTCGAA 1 cut(s) 294
PceI AGGCCT 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 211
PkrI GCNGC 7 cut(s) 87, 215, 303, 306, 309, 312, 315
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 7 cut(s) 86, 214, 302, 305, 308, 311, 314
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 194
SetI ASST 4 cut(s) 30, 218, 318, 408
SfaNI GCATC 3 cut(s) 67, 257, 346
SfuI TTCGAA 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 5 cut(s) 198, 254, 337, 361, 383
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 85
SspMI CTAG 2 cut(s) 29, 317
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 163
TaqI TCGA 1 cut(s) 294
TasI AATT 5 cut(s) 198, 254, 337, 361, 383
TauI GCSGC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseI GCWGC 6 cut(s) 213, 301, 304, 307, 310, 313
TspDTI ATGAA 2 cut(s) 66, 131
XapI RAATTY 1 cut(s) 383
XspI CTAG 2 cut(s) 29, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.