RchiOBHm_Chr2g0088891

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000213
Physical Location & Seq
Reverse (-)
3236432 .. 3238121
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46419

Sequence Viewer

Length: 1356 bp
ATGTCCCCCAAAAACTGTCTGAACCTCGCGGCCAACAGAGGCAGCGATGGTGAAGAAAACAGGCATCATCGGCTTCGACATCGCCGAATCCATGGAGATAAGAAGCATAGGCTTCATGGATGCACGGCGGCGATGAAGAAGAAGAAAGGCAAGTTGATGGAGAAGGCGAAGAAGATAACAACGAAGAAGAAGACAAGGAAGAAGAAGCTTAAGTTGACTGAGTTGGAGACCAACAAGTCGCTGTACATATGTAGCCTTGAGCACCACGAGGGGATGTGGGTGTCTTATGTTGTCCGCGCCATCAAATTGTCCGATTTGTTGTCATCCTCCTCCGATGATGATCTGCAATTGCGGCAACTAGCTTATAAGGCTGGTACGGATCTTCCCGGATCTGTGCGTTGTGGTGTGATGGGCTCCCAAATTGTTTTCGCCGGTGGCCTGAAACCCAGCGTCCCTTACGGCATGGGGGCAATACGCACCGACTCAATTTGGTATAGAGATGTTTATGCCTTTGAAACATCGGACCCCAAGCAGCAGCAGCATGAAATCAGGAAGATGGATGCCACTTTACTTGGAGCCAAGTTCTCCCCTTGGATGGTGGAGCTGGGCGGCAAATTGTACGCCCTTTGCTATATGGGGGTGTCCCATTCTCCGGAATTTGAGGTATTTGACCCTAAACTGCAGACTTGGTCTGCTCTACCTCAGCCTCCATTTTTCCAACATGGCTCTCGATATGACAACCATGCTCCTTTTGCTTATGCAATTGCTGGCACCAAAATGTTTGTCTCCCATGAATTATGTCCAGTCTTCTGCTTTGATGTCTCCCAACCGGACTCTGGATGGAGACTAGTCCCCACTATGTGCCAAGGTGGCCCTTTTCCTTTTATCGGCACAGCTTTAGTCCTGGACCTGCCGGCTGCTGGTGGCAACAAGAAGAAGATATTGTTTGGCCATAGTGCGCGTTGTTGTTTTAGTCTGGCAGTTTATCTTATATCGGGGTTGGATGAAAATGAAGAATCCATCACTCAAATTGGGGATTTGAAACTGCCAATATGGCCTTATGAGTTGGGTCCCGCAGCAGCTTCTGATTTTGTCCACATAGGAGGTCAGAAAGCCTGCCTTGTTATCACCCAATTCATATCCTCACTGGAAGAGGAACCTAGATGGAATGAGCCGGGGACTCATAAGACACAAGGGGTTGCCATACCATTTCAATTTGAGATTGATATCACCAAGCTGGACAAGGATGAGAAAGATTGCTTCACTCTCCAATTCATGCCTCCTCGCATCTTCCAATACCAGACTAACCCAGCCACTTATCCAAGCCCTGAAACGGTTGGTTGCTTTGTCTTGTAA

Protein Analysis

451

Amino Acids

50.52

Weight (kDa)

8.8

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 190 - 299 8.1e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AasI GACNNNNNNGTC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 918
AccB1I GGYRCC 1 cut(s) 770
AccII CGCG 3 cut(s) 29, 297, 961
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 6 cut(s) 29, 128, 295, 352, 609, 1074
AclWI GGATC 2 cut(s) 387, 397
AcoI YGGCCR 2 cut(s) 30, 949
AcsI RAATTY 1 cut(s) 656
AdeI CACNNNGTG 1 cut(s) 861
AfaI GTAC 3 cut(s) 245, 376, 620
AfiI CCNNNNNNNGG 6 cut(s) 595, 652, 836, 887, 920, 1333
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 515, 1042, 1214
AhlI ACTAGT 1 cut(s) 847
AjnI CCWGG 1 cut(s) 903
AluBI AGCT 6 cut(s) 208, 362, 604, 896, 1082, 1237
AluI AGCT 6 cut(s) 208, 362, 604, 896, 1082, 1237
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 4 cut(s) 221, 790, 826, 838
AlwI GGATC 2 cut(s) 387, 397
AlwNI CAGNNNCTG 1 cut(s) 1085
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 5 cut(s) 30, 436, 871, 949, 1055
ApeKI GCWGC 7 cut(s) 42, 532, 535, 538, 917, 1076, 1079
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
AspLEI GCGC 2 cut(s) 299, 961
AspS9I GGNCC 4 cut(s) 523, 872, 907, 1070
AsuC2I CCSGG 2 cut(s) 387, 1176
AsuHPI GGTGA 3 cut(s) 62, 1120, 1222
AvaII GGWCC 3 cut(s) 523, 907, 1070
BalI TGGCCA 1 cut(s) 951
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 416
BauI CACGAG 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 197, 799
Bbv12I GWGCWC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 7 cut(s) 54, 544, 547, 550, 904, 1088, 1091
BccI CCATC 9 cut(s) 41, 151, 308, 403, 550, 589, 834, 1028, 1158
BceAI ACGGC 2 cut(s) 141, 475
BciT130I CCWGG 1 cut(s) 905
BcnI CCSGG 2 cut(s) 387, 1176
BcoDI GTCTC 4 cut(s) 221, 790, 826, 838
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 3 cut(s) 359, 848, 1161
BfmI CTRYAG 1 cut(s) 680
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 918
BglI GCCNNNNNGGC 2 cut(s) 870, 1054
Bme1390I CCNGG 3 cut(s) 387, 905, 1176
Bme18I GGWCC 3 cut(s) 523, 907, 1070
BmgT120I GGNCC 4 cut(s) 523, 872, 907, 1070
BmiI GGNNCC 7 cut(s) 415, 525, 577, 772, 1071, 1072, 1158
BmrFI CCNGG 3 cut(s) 387, 905, 1176
BmsI GCATC 4 cut(s) 73, 110, 550, 1296
BpiI GAAGAC 2 cut(s) 197, 799
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 387, 1176
BsaBI GATNNNNATC 2 cut(s) 339, 1226
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 91, 590, 865, 1175
BsaWI WCCGGW 2 cut(s) 652, 829
Bsc4I CCNNNNNNNGG 6 cut(s) 595, 652, 836, 887, 920, 1333
Bse118I RCCGGY 2 cut(s) 431, 913
Bse1I ACTGG 2 cut(s) 803, 1152
Bse8I GATNNNNATC 2 cut(s) 339, 1226
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 1 cut(s) 905
BseDI CCNNGG 4 cut(s) 91, 590, 865, 1175
BseGI GGATG 8 cut(s) 125, 279, 323, 565, 600, 845, 1009, 1252
BseJI GATNNNNATC 2 cut(s) 339, 1226
BseLI CCNNNNNNNGG 6 cut(s) 595, 652, 836, 887, 920, 1333
BseMII CTCAG 2 cut(s) 210, 716
BseNI ACTGG 2 cut(s) 803, 1152
BseRI GAGGAG 2 cut(s) 319, 1272
BseXI GCAGC 7 cut(s) 54, 544, 547, 550, 904, 1088, 1091
BseYI CCCAGC 3 cut(s) 446, 604, 1309
Bsh1236I CGCG 3 cut(s) 29, 297, 961
BshFI GGCC 5 cut(s) 32, 438, 873, 951, 1057
BshNI GGYRCC 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 6 cut(s) 387, 432, 653, 830, 914, 1175
BslFI GGGAC 5 cut(s) 437, 628, 836, 1056, 1192
BslI CCNNNNNNNGG 6 cut(s) 595, 652, 836, 887, 920, 1333
BsmAI GTCTC 4 cut(s) 221, 790, 826, 838
BsmFI GGGAC 5 cut(s) 437, 628, 836, 1056, 1192
BsnI GGCC 5 cut(s) 32, 438, 873, 951, 1057
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 264, 416
Bsp13I TCCGGA 1 cut(s) 652
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 340, 379, 389
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 29, 128, 295, 352, 609, 1074
BspANI GGCC 5 cut(s) 32, 438, 873, 951, 1057
BspCNI CTCAG 2 cut(s) 211, 715
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 3 cut(s) 29, 297, 961
BspLI GGNNCC 7 cut(s) 415, 525, 577, 772, 1071, 1072, 1158
BspMAI CTGCAG 1 cut(s) 684
BspMI ACCTGC 1 cut(s) 918
BspPI GGATC 2 cut(s) 387, 397
BspT107I GGYRCC 1 cut(s) 770
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 2 cut(s) 431, 913
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 803, 1152
BssAI RCCGGY 2 cut(s) 431, 913
BssECI CCNNGG 4 cut(s) 91, 590, 865, 1175
BssMI GATC 3 cut(s) 340, 379, 389
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 3 cut(s) 91, 590, 865
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 2 cut(s) 17, 1336
Bst6I CTCTTC 1 cut(s) 1146
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 769, 915, 1117
BstDEI CTNAG 2 cut(s) 219, 702
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 8 cut(s) 125, 279, 323, 565, 600, 845, 1009, 1252
BstFNI CGCG 3 cut(s) 29, 297, 961
BstHHI GCGC 2 cut(s) 299, 961
BstKTI GATC 3 cut(s) 343, 382, 392
BstMAI GTCTC 4 cut(s) 221, 790, 826, 838
BstMBI GATC 3 cut(s) 340, 379, 389
BstMWI GCNNNNNNNGC 7 cut(s) 70, 352, 368, 538, 752, 870, 1054
BstNI CCWGG 1 cut(s) 905
BstSCI CCNGG 3 cut(s) 385, 903, 1174
BstSFI CTRYAG 1 cut(s) 680
BstUI CGCG 3 cut(s) 29, 297, 961
BstV1I GCAGC 7 cut(s) 54, 544, 547, 550, 904, 1088, 1091
BstV2I GAAGAC 2 cut(s) 197, 799
BstX2I RGATCY 2 cut(s) 379, 389
BstYI RGATCY 2 cut(s) 379, 389
BsuRI GGCC 5 cut(s) 32, 438, 873, 951, 1057
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 3 cut(s) 60, 65, 146
BtsCI GGATG 8 cut(s) 125, 279, 323, 565, 600, 845, 1009, 1252
BtsIMutI CAGTG 1 cut(s) 1145
BveI ACCTGC 1 cut(s) 918
Cac8I GCNNGC 3 cut(s) 769, 915, 1117
CaiI CAGNNNCTG 1 cut(s) 1085
CfoI GCGC 2 cut(s) 299, 961
Cfr10I RCCGGY 2 cut(s) 431, 913
Cfr13I GGNCC 4 cut(s) 523, 872, 907, 1070
CseI GACGC 1 cut(s) 439
Csp6I GTAC 3 cut(s) 244, 375, 619
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 8 cut(s) 92, 116, 463, 542, 722, 743, 791, 1276
CviQI GTAC 3 cut(s) 244, 375, 619
DdeI CTNAG 2 cut(s) 219, 702
DpnI GATC 3 cut(s) 342, 381, 391
DpnII GATC 3 cut(s) 340, 379, 389
DraIII CACNNNGTG 1 cut(s) 861
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 30, 949
Eam1104I CTCTTC 1 cut(s) 1146
EarI CTCTTC 1 cut(s) 1146
Eco130I CCWWGG 3 cut(s) 91, 590, 865
Eco24I GRGCYC 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 221
Eco32I GATATC 1 cut(s) 1228
Eco47I GGWCC 3 cut(s) 523, 907, 1070
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 1 cut(s) 903
EcoRV GATATC 1 cut(s) 1228
EcoT14I CCWWGG 3 cut(s) 91, 590, 865
EcoT38I GRGCYC 1 cut(s) 416
ErhI CCWWGG 3 cut(s) 91, 590, 865
FaeI CATG 8 cut(s) 95, 119, 466, 545, 725, 746, 794, 1279
FalI AAGNNNNNCTT 2 cut(s) 1104, 1136
FaqI GGGAC 5 cut(s) 437, 628, 836, 1056, 1192
FatI CATG 8 cut(s) 91, 115, 462, 541, 721, 742, 790, 1275
FauI CCCGC 1 cut(s) 1081
FauNDI CATATG 1 cut(s) 248
FokI GGATG 8 cut(s) 132, 286, 310, 572, 607, 852, 1016, 1259
FriOI GRGCYC 1 cut(s) 416
FspBI CTAG 3 cut(s) 359, 848, 1161
GlaI GCGC 2 cut(s) 298, 960
GsaI CCCAGC 3 cut(s) 450, 608, 1313
HaeIII GGCC 5 cut(s) 32, 438, 873, 951, 1057
HapII CCGG 6 cut(s) 387, 432, 653, 830, 914, 1175
HgaI GACGC 1 cut(s) 439
HhaI GCGC 2 cut(s) 299, 961
Hin1II CATG 8 cut(s) 95, 119, 466, 545, 725, 746, 794, 1279
Hin6I GCGC 2 cut(s) 297, 959
HinP1I GCGC 2 cut(s) 297, 959
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 5 cut(s) 87, 482, 833, 1016, 1180
HpaII CCGG 6 cut(s) 387, 432, 653, 830, 914, 1175
HphI GGTGA 3 cut(s) 62, 1120, 1222
Hpy166II GTNNAC 2 cut(s) 216, 1096
Hpy188I TCNGA 6 cut(s) 21, 313, 334, 523, 1087, 1110
Hpy188III TCNNGA 4 cut(s) 550, 653, 729, 837
Hpy8I GTNNAC 2 cut(s) 216, 1096
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 17, 1336
HpyCH4V TGCA 4 cut(s) 123, 346, 682, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 352, 368, 538, 752, 870, 1054
HpyF3I CTNAG 2 cut(s) 219, 702
Hsp92II CATG 8 cut(s) 95, 119, 466, 545, 725, 746, 794, 1279
HspAI GCGC 2 cut(s) 297, 959
KflI GGGWCCC 1 cut(s) 1070
Kpn2I TCCGGA 1 cut(s) 652
KroI GCCGGC 1 cut(s) 913
KroNI GCCGGC 1 cut(s) 915
Kzo9I GATC 3 cut(s) 340, 379, 389
LmnI GCTCC 4 cut(s) 419, 575, 601, 751
Lsp1109I GCAGC 7 cut(s) 54, 544, 547, 550, 904, 1088, 1091
LweI GCATC 4 cut(s) 73, 110, 550, 1296
MaeI CTAG 3 cut(s) 359, 848, 1161
MalI GATC 3 cut(s) 342, 381, 391
MboI GATC 3 cut(s) 340, 379, 389
MfeI CAATTG 2 cut(s) 347, 762
MflI RGATCY 2 cut(s) 379, 389
MhlI GDGCHC 2 cut(s) 264, 416
MlsI TGGCCA 1 cut(s) 951
MluNI TGGCCA 1 cut(s) 951
MlyI GAGTC 3 cut(s) 476, 827, 1174
MmeI TCCRAC 3 cut(s) 204, 742, 981
Mox20I TGGCCA 1 cut(s) 951
MroI TCCGGA 1 cut(s) 652
MroNI GCCGGC 1 cut(s) 913
MscI TGGCCA 1 cut(s) 951
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 951
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 6 cut(s) 387, 432, 653, 830, 914, 1175
MspR9I CCNGG 3 cut(s) 387, 905, 1176
MunI CAATTG 2 cut(s) 347, 762
MvaI CCWGG 1 cut(s) 905
MvnI CGCG 3 cut(s) 29, 297, 961
MwoI GCNNNNNNNGC 7 cut(s) 70, 352, 368, 538, 752, 870, 1054
NaeI GCCGGC 1 cut(s) 915
NciI CCSGG 2 cut(s) 387, 1176
NcoI CCATGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 248
NdeII GATC 3 cut(s) 340, 379, 389
NgoMIV GCCGGC 1 cut(s) 913
NlaIII CATG 8 cut(s) 95, 119, 466, 545, 725, 746, 794, 1279
NlaIV GGNNCC 7 cut(s) 415, 525, 577, 772, 1071, 1072, 1158
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 915
PfeI GAWTC 2 cut(s) 87, 1016
PflFI GACNNNGTC 1 cut(s) 688
PfoI TCCNGGA 2 cut(s) 385, 903
PleI GAGTC 3 cut(s) 476, 827, 1174
PpsI GAGTC 3 cut(s) 476, 827, 1174
PpuMI RGGWCCY 1 cut(s) 1070
PsiI TTATAA 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 1 cut(s) 903
PspFI CCCAGC 3 cut(s) 446, 604, 1309
PspGI CCWGG 1 cut(s) 903
PspN4I GGNNCC 7 cut(s) 415, 525, 577, 772, 1071, 1072, 1158
PspPI GGNCC 4 cut(s) 523, 872, 907, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 2 cut(s) 379, 389
PsyI GACNNNGTC 1 cut(s) 688
RsaI GTAC 3 cut(s) 245, 376, 620
RsaNI GTAC 3 cut(s) 244, 375, 619
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 3 cut(s) 340, 379, 389
Sau96I GGNCC 4 cut(s) 523, 872, 907, 1070
SchI GAGTC 3 cut(s) 476, 827, 1174
ScrFI CCNGG 3 cut(s) 387, 905, 1176
SduI GDGCHC 2 cut(s) 264, 416
SfaNI GCATC 4 cut(s) 73, 110, 550, 1296
SfcI CTRYAG 1 cut(s) 680
SgrAI CRCCGGYG 1 cut(s) 431
SinI GGWCC 3 cut(s) 523, 907, 1070
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 209, 257
SmoI CTYRAG 2 cut(s) 209, 257
SpeI ACTAGT 1 cut(s) 847
SsiI CCGC 6 cut(s) 29, 128, 295, 352, 609, 1074
SspMI CTAG 3 cut(s) 359, 848, 1161
StyD4I CCNGG 3 cut(s) 385, 903, 1174
StyI CCWWGG 3 cut(s) 91, 590, 865
TaaI ACNGT 2 cut(s) 17, 1336
TaqI TCGA 2 cut(s) 76, 730
TatI WGTACW 1 cut(s) 243
TauI GCSGC 4 cut(s) 32, 131, 355, 612
TfiI GAWTC 2 cut(s) 87, 1016
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 1152
TseI GCWGC 7 cut(s) 42, 532, 535, 538, 917, 1076, 1079
TspDTI ATGAA 8 cut(s) 104, 149, 558, 807, 1020, 1026, 1126, 1264
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 1152
Tth111I GACNNNGTC 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 3 cut(s) 523, 907, 1070
XapI RAATTY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 833
XspI CTAG 3 cut(s) 359, 848, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.