Rw7G031660

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000213
Physical Location & Seq
Reverse (-)
45465080 .. 45465994
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031660.1

Sequence Viewer

Length: 915 bp
ATGAAACCCAGCGCCCGTATGCCTTCATTCGATCGTCCCGACATAGTTTGGCATAGACATGTTTATGCCTTTGAAACTGACCCCAACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGATGGCACATTAGTTGAAGCCAAGTTTCGTCCACGGATGGAGGAGCTGGGGGGCAAACTGTATGCACTTTCATATAGGCTGGTGGCTGATCCTCCCGCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCACAGCCTCCATTCTTCAAACGTCATGGTCAGTATAACCGCGGTGGCAACCTCTCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGGAGAGATGTCCTGTGTTCTGTTTCGATGTAGCTCACCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAACGCGGCCCTTTTCCTTTTGGAAACAAAGCTTTGGTCCTGGACCTGCCTGCGGGTGCTGATGATAAGAAGAAGATAATGTTTGCCTATACTATGGGTCGTTGGTATCTACGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACACCGATTGGTGATTTTAAGCTGCCAAGGTTGCCTCAGGAATATGAATTTGCAAAAAGATGTTATTTTGTTCATATAGGAGGTCAGAAAGCCTGCATTATTGCCCCCGAATTGGCTATGCCTTATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACGGGGTGTTGCCATGCCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACCATCCAATTCATGCCTACTCGTATCTTCAAATTCTATACCAACCCATCCACTTTTCCTGATCCTGAAGCATATGGTTGCTTTGTGCTGTAA

Protein Analysis

304

Amino Acids

35.01

Weight (kDa)

8.84

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 45 - 139 2.5e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 256, 335
AccI GTMKAC 1 cut(s) 798
AccII CGCG 2 cut(s) 306, 435
AciI CCGC 5 cut(s) 219, 304, 306, 435, 482
AclWI GGATC 2 cut(s) 206, 878
AcsI RAATTY 2 cut(s) 629, 854
AcuI CTGAAG 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 755
AfiI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 6 cut(s) 74, 140, 283, 773, 779, 853
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 4 cut(s) 169, 389, 461, 604
AluI AGCT 4 cut(s) 169, 389, 461, 604
Alw26I GTCTC 2 cut(s) 357, 421
AlwI GGATC 2 cut(s) 206, 878
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 91, 604
ApoI RAATTY 2 cut(s) 629, 854
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
AspLEI GCGC 2 cut(s) 14, 259
AspS9I GGNCC 4 cut(s) 437, 466, 472, 716
AsuHPI GGTGA 3 cut(s) 383, 605, 781
AvaII GGWCC 3 cut(s) 466, 472, 716
AxyI CCTNAGG 1 cut(s) 618
BanI GGYRCC 2 cut(s) 256, 335
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 103, 591
BccI CCATC 5 cut(s) 115, 119, 154, 833, 877
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 357, 421
BfoI RGCGCY 2 cut(s) 15, 260
BfuAI ACCTGC 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 3 cut(s) 92, 436, 605
BlsI GCNGC 3 cut(s) 93, 437, 606
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 3 cut(s) 466, 472, 716
BmgT120I GGNCC 4 cut(s) 437, 466, 472, 716
BmiI GGNNCC 2 cut(s) 258, 337
BmrFI CCNGG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 155, 304, 558, 608, 792
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
Bse1I ACTGG 1 cut(s) 337
Bse21I CCTNAGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 5 cut(s) 155, 304, 558, 608, 792
BseGI GGATG 4 cut(s) 130, 165, 825, 869
BseLI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
BseMII CTCAG 2 cut(s) 368, 632
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 103, 591
BseYI CCCAGC 3 cut(s) 8, 169, 734
Bsh1236I CGCG 2 cut(s) 306, 435
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 438
BshNI GGYRCC 2 cut(s) 256, 335
BsiEI CGRYCG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 21, 751
BslI CCNNNNNNNGG 4 cut(s) 244, 245, 481, 694
BsmAI GTCTC 2 cut(s) 357, 421
BsmFI GGGAC 2 cut(s) 21, 751
BsnI GGCC 1 cut(s) 438
Bsp143I GATC 3 cut(s) 31, 211, 883
BspACI CCGC 5 cut(s) 219, 304, 306, 435, 482
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 367, 631
BspFNI CGCG 2 cut(s) 306, 435
BspLI GGNNCC 2 cut(s) 258, 337
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 2 cut(s) 206, 878
BspT107I GGYRCC 2 cut(s) 256, 335
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 5 cut(s) 155, 304, 558, 608, 792
BssMI GATC 3 cut(s) 31, 211, 883
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 3 cut(s) 558, 608, 792
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 424
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 480, 676
BstDEI CTNAG 2 cut(s) 354, 618
BstDSI CCRYGG 2 cut(s) 155, 304
BstF5I GGATG 4 cut(s) 130, 165, 825, 869
BstFNI CGCG 2 cut(s) 306, 435
BstH2I RGCGCY 2 cut(s) 15, 260
BstHHI GCGC 2 cut(s) 14, 259
BstKTI GATC 3 cut(s) 34, 214, 886
BstMAI GTCTC 2 cut(s) 357, 421
BstMBI GATC 3 cut(s) 31, 211, 883
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 435, 613
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 468
BstUI CGCG 2 cut(s) 306, 435
BstV1I GCAGC 2 cut(s) 103, 591
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 2 cut(s) 155, 304
BtsCI GGATG 4 cut(s) 130, 165, 825, 869
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 480, 676
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 2 cut(s) 14, 259
Cfr13I GGNCC 4 cut(s) 437, 466, 472, 716
Cfr42I CCGCGG 1 cut(s) 307
CviAII CATG 4 cut(s) 59, 290, 763, 835
DdeI CTNAG 2 cut(s) 354, 618
DinI GGCGCC 1 cut(s) 258
DpnI GATC 3 cut(s) 33, 213, 885
DpnII GATC 3 cut(s) 31, 211, 883
DraIII CACNNNGTG 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco130I CCWWGG 3 cut(s) 558, 608, 792
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 3 cut(s) 466, 472, 716
Eco57I CTGAAG 1 cut(s) 909
Eco81I CCTNAGG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 787
EcoT14I CCWWGG 3 cut(s) 558, 608, 792
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 3 cut(s) 558, 608, 792
FaeI CATG 4 cut(s) 62, 293, 766, 838
FaqI GGGAC 2 cut(s) 21, 751
FatI CATG 4 cut(s) 58, 289, 762, 834
FauI CCCGC 2 cut(s) 226, 475
FauNDI CATATG 1 cut(s) 895
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 3 cut(s) 92, 436, 605
FokI GGATG 4 cut(s) 137, 172, 812, 856
Fsp4HI GCNGC 3 cut(s) 92, 436, 605
GlaI GCGC 2 cut(s) 13, 258
GluI GCNGC 3 cut(s) 92, 436, 605
GsaI CCCAGC 3 cut(s) 12, 173, 738
HaeII RGCGCY 2 cut(s) 15, 260
HaeIII GGCC 1 cut(s) 438
HhaI GCGC 2 cut(s) 14, 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 4 cut(s) 62, 293, 766, 838
Hin6I GCGC 2 cut(s) 12, 257
HinP1I GCGC 2 cut(s) 12, 257
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 2 cut(s) 575, 739
HphI GGTGA 3 cut(s) 383, 605, 781
Hpy166II GTNNAC 2 cut(s) 155, 799
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 7 cut(s) 38, 98, 356, 572, 620, 881, 887
Hpy8I GTNNAC 2 cut(s) 155, 799
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 188, 326, 635, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 613
HpyF3I CTNAG 2 cut(s) 354, 618
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 4 cut(s) 62, 293, 766, 838
HspAI GCGC 2 cut(s) 12, 257
KasI GGCGCC 1 cut(s) 256
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 3 cut(s) 31, 211, 883
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 103, 591
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 33, 213, 885
MboI GATC 3 cut(s) 31, 211, 883
MboII GAAGA 7 cut(s) 271, 411, 511, 514, 575, 823, 841
MluCI AATT 7 cut(s) 111, 629, 692, 773, 814, 830, 854
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 1 cut(s) 733
MnlI CCTC 9 cut(s) 105, 157, 220, 225, 282, 326, 627, 656, 724
MseI TTAA 2 cut(s) 600, 726
MslI CAYNNNNRTG 3 cut(s) 57, 63, 341
MspA1I CMGCKG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 2 cut(s) 306, 435
MwoI GCNNNNNNNGC 2 cut(s) 435, 613
NarI GGCGCC 1 cut(s) 257
NdeI CATATG 1 cut(s) 895
NdeII GATC 3 cut(s) 31, 211, 883
NlaIII CATG 4 cut(s) 62, 293, 766, 838
NlaIV GGNNCC 2 cut(s) 258, 337
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 804
PfeI GAWTC 1 cut(s) 575
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 3 cut(s) 93, 437, 606
Ple19I CGATCG 1 cut(s) 34
PleI GAGTC 1 cut(s) 733
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 733
PpuMI RGGWCCY 1 cut(s) 716
PscI ACATGT 1 cut(s) 58
PsiI TTATAA 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 3 cut(s) 8, 169, 734
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 258, 337
PspPI GGNCC 4 cut(s) 437, 466, 472, 716
PspPPI RGGWCCY 1 cut(s) 716
PstNI CAGNNNCTG 1 cut(s) 332
PvuI CGATCG 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 57, 63, 341
SacII CCGCGG 1 cut(s) 307
SalI GTCGAC 1 cut(s) 797
SaqAI TTAA 2 cut(s) 600, 726
SatI GCNGC 3 cut(s) 92, 436, 605
Sau3AI GATC 3 cut(s) 31, 211, 883
Sau96I GGNCC 4 cut(s) 437, 466, 472, 716
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 1 cut(s) 470
SfoI GGCGCC 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 3 cut(s) 466, 472, 716
SmiMI CAYNNNNRTG 3 cut(s) 57, 63, 341
Sse9I AATT 7 cut(s) 111, 629, 692, 773, 814, 830, 854
SsiI CCGC 5 cut(s) 219, 304, 306, 435, 482
SspDI GGCGCC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 3 cut(s) 558, 608, 792
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 289
TaqI TCGA 4 cut(s) 30, 234, 381, 798
TasI AATT 7 cut(s) 111, 629, 692, 773, 814, 830, 854
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 2 cut(s) 600, 726
Tru9I TTAA 2 cut(s) 600, 726
TseI GCWGC 2 cut(s) 91, 604
TspDTI ATGAA 6 cut(s) 15, 17, 183, 642, 644, 823
TspGWI ACGGA 1 cut(s) 172
VpaK11BI GGWCC 3 cut(s) 466, 472, 716
XapI RAATTY 2 cut(s) 629, 854
XceI RCATGY 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.