RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 411, 1082 |
| AccB1I | GGYRCC | 1 cut(s) | 683 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 653 |
| AccI | GTMKAC | 1 cut(s) | 486 |
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 6 cut(s) | 31, 250, 255, 336, 384, 564 |
| AcsI | RAATTY | 4 cut(s) | 589, 641, 1130, 1136 |
| AcuI | CTGAAG | 1 cut(s) | 1092 |
| AfaI | GTAC | 2 cut(s) | 891, 995 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 341, 422, 570, 618, 653, 733, 797, 886 |
| AgsI | TTSAA | 4 cut(s) | 200, 391, 952, 1136 |
| AhlI | ACTAGT | 2 cut(s) | 140, 892 |
| AjnI | CCWGG | 2 cut(s) | 963, 976 |
| AluBI | AGCT | 9 cut(s) | 9, 195, 399, 446, 550, 691, 806, 955, 970 |
| AluI | AGCT | 9 cut(s) | 9, 195, 399, 446, 550, 691, 806, 955, 970 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 1 cut(s) | 703 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 970 |
| AoxI | GGCC | 3 cut(s) | 318, 735, 781 |
| ApeKI | GCWGC | 6 cut(s) | 338, 723, 955, 970, 1105, 1112 |
| ApoI | RAATTY | 4 cut(s) | 589, 641, 1130, 1136 |
| AspLEI | GCGC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 6 cut(s) | 318, 404, 413, 425, 736, 782 |
| AsuC2I | CCSGG | 1 cut(s) | 638 |
| AsuHPI | GGTGA | 3 cut(s) | 26, 100, 1078 |
| AvaII | GGWCC | 3 cut(s) | 404, 413, 425 |
| BanI | GGYRCC | 1 cut(s) | 683 |
| BanII | GRGCYC | 1 cut(s) | 365 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 944, 976 |
| BauI | CACGAG | 4 cut(s) | 408, 441, 506, 809 |
| BbsI | GAAGAC | 3 cut(s) | 143, 333, 1080 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BbvI | GCAGC | 6 cut(s) | 325, 710, 942, 957, 1092, 1099 |
| BccI | CCATC | 2 cut(s) | 1014, 1225 |
| BceAI | ACGGC | 3 cut(s) | 44, 317, 796 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 29, 63 |
| BciT130I | CCWGG | 2 cut(s) | 965, 978 |
| BcnI | CCSGG | 1 cut(s) | 638 |
| BcoDI | GTCTC | 1 cut(s) | 703 |
| BcuI | ACTAGT | 2 cut(s) | 140, 892 |
| BfaI | CTAG | 3 cut(s) | 141, 893, 1010 |
| BfmI | CTRYAG | 2 cut(s) | 190, 1106 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 780 |
| BglII | AGATCT | 1 cut(s) | 1063 |
| BisI | GCNGC | 9 cut(s) | 32, 255, 339, 385, 724, 956, 971, 1106, 1113 |
| BlsI | GCNGC | 9 cut(s) | 33, 256, 340, 386, 725, 957, 972, 1107, 1114 |
| Bme1390I | CCNGG | 3 cut(s) | 638, 965, 978 |
| Bme18I | GGWCC | 3 cut(s) | 404, 413, 425 |
| BmgT120I | GGNCC | 6 cut(s) | 318, 404, 413, 425, 736, 782 |
| BmiI | GGNNCC | 2 cut(s) | 364, 685 |
| BmrFI | CCNGG | 3 cut(s) | 638, 965, 978 |
| BmrI | ACTGGG | 1 cut(s) | 241 |
| BmsI | GCATC | 2 cut(s) | 43, 55 |
| BmuI | ACTGGG | 1 cut(s) | 241 |
| BoxI | GACNNNNGTC | 1 cut(s) | 758 |
| BpiI | GAAGAC | 3 cut(s) | 143, 333, 1080 |
| BpmI | CTGGAG | 1 cut(s) | 554 |
| BpuMI | CCSGG | 1 cut(s) | 638 |
| Bsa29I | ATCGAT | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 3 cut(s) | 976, 1090, 1149 |
| BsaWI | WCCGGW | 1 cut(s) | 879 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 919, 949 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 341, 422, 570, 618, 653, 733, 797, 886 |
| Bse118I | RCCGGY | 2 cut(s) | 320, 542 |
| Bse1I | ACTGG | 3 cut(s) | 208, 236, 991 |
| BseBI | CCWGG | 2 cut(s) | 965, 978 |
| BseCI | ATCGAT | 1 cut(s) | 128 |
| BseDI | CCNNGG | 3 cut(s) | 976, 1090, 1149 |
| BseGI | GGATG | 2 cut(s) | 499, 1217 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 341, 422, 570, 618, 653, 733, 797, 886 |
| BseNI | ACTGG | 3 cut(s) | 208, 236, 991 |
| BseXI | GCAGC | 6 cut(s) | 325, 710, 942, 957, 1092, 1099 |
| BsgI | GTGCAG | 1 cut(s) | 23 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BshFI | GGCC | 3 cut(s) | 320, 737, 783 |
| BshNI | GGYRCC | 1 cut(s) | 683 |
| BshVI | ATCGAT | 1 cut(s) | 128 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BsiSI | CCGG | 5 cut(s) | 321, 342, 543, 638, 880 |
| BslFI | GGGAC | 5 cut(s) | 74, 163, 746, 892, 1108 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 341, 422, 570, 618, 653, 733, 797, 886 |
| BsmAI | GTCTC | 1 cut(s) | 703 |
| BsmBI | CGTCTC | 1 cut(s) | 703 |
| BsmFI | GGGAC | 5 cut(s) | 74, 163, 746, 892, 1108 |
| BsnI | GGCC | 3 cut(s) | 320, 737, 783 |
| Bsp1286I | GDGCHC | 2 cut(s) | 365, 816 |
| Bsp143I | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| BspACI | CCGC | 6 cut(s) | 31, 250, 255, 336, 384, 564 |
| BspANI | GGCC | 3 cut(s) | 320, 737, 783 |
| BspDI | ATCGAT | 1 cut(s) | 128 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspLI | GGNNCC | 2 cut(s) | 364, 685 |
| BspMAI | CTGCAG | 1 cut(s) | 1110 |
| BspT107I | GGYRCC | 1 cut(s) | 683 |
| BsrFI | RCCGGY | 2 cut(s) | 320, 542 |
| BsrI | ACTGG | 3 cut(s) | 208, 236, 991 |
| BssAI | RCCGGY | 2 cut(s) | 320, 542 |
| BssECI | CCNNGG | 3 cut(s) | 976, 1090, 1149 |
| BssMI | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| BssSI | CACGAG | 4 cut(s) | 408, 441, 506, 809 |
| BssT1I | CCWWGG | 2 cut(s) | 1090, 1149 |
| Bst2BI | CACGAG | 4 cut(s) | 408, 441, 506, 809 |
| Bst2UI | CCWGG | 2 cut(s) | 965, 978 |
| Bst4CI | ACNGT | 3 cut(s) | 65, 872, 1174 |
| Bst6I | CTCTTC | 1 cut(s) | 1230 |
| BstC8I | GCNNGC | 7 cut(s) | 322, 382, 436, 544, 548, 682, 1110 |
| BstDEI | CTNAG | 1 cut(s) | 567 |
| BstEII | GGTNACC | 1 cut(s) | 875 |
| BstF5I | GGATG | 2 cut(s) | 499, 1217 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 254 |
| BstKTI | GATC | 4 cut(s) | 57, 262, 1018, 1066 |
| BstMAI | GTCTC | 1 cut(s) | 703 |
| BstMBI | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 37, 251, 529, 780 |
| BstNI | CCWGG | 2 cut(s) | 965, 978 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 758 |
| BstPI | GGTNACC | 1 cut(s) | 875 |
| BstSCI | CCNGG | 3 cut(s) | 636, 963, 976 |
| BstSFI | CTRYAG | 2 cut(s) | 190, 1106 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 6 cut(s) | 325, 710, 942, 957, 1092, 1099 |
| BstV2I | GAAGAC | 3 cut(s) | 143, 333, 1080 |
| BstX2I | RGATCY | 1 cut(s) | 1063 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 750 |
| BstYI | RGATCY | 1 cut(s) | 1063 |
| Bsu15I | ATCGAT | 1 cut(s) | 128 |
| BsuRI | GGCC | 3 cut(s) | 320, 737, 783 |
| BsuTUI | ATCGAT | 1 cut(s) | 128 |
| BtsCI | GGATG | 2 cut(s) | 499, 1217 |
| BtsIMutI | CAGTG | 2 cut(s) | 70, 1170 |
| Cac8I | GCNNGC | 7 cut(s) | 322, 382, 436, 544, 548, 682, 1110 |
| CaiI | CAGNNNCTG | 1 cut(s) | 970 |
| CfoI | GCGC | 1 cut(s) | 254 |
| Cfr10I | RCCGGY | 2 cut(s) | 320, 542 |
| Cfr13I | GGNCC | 6 cut(s) | 318, 404, 413, 425, 736, 782 |
| ClaI | ATCGAT | 1 cut(s) | 128 |
| CseI | GACGC | 1 cut(s) | 538 |
| Csp6I | GTAC | 2 cut(s) | 890, 994 |
| CviAII | CATG | 3 cut(s) | 115, 490, 944 |
| CviQI | GTAC | 2 cut(s) | 890, 994 |
| DdeI | CTNAG | 1 cut(s) | 567 |
| DpnI | GATC | 4 cut(s) | 56, 261, 1017, 1065 |
| DpnII | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| DraI | TTTAAA | 2 cut(s) | 588, 1129 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 411, 1082 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 411, 1082 |
| Eam1104I | CTCTTC | 1 cut(s) | 1230 |
| EarI | CTCTTC | 1 cut(s) | 1230 |
| Eco130I | CCWWGG | 2 cut(s) | 1090, 1149 |
| Eco24I | GRGCYC | 1 cut(s) | 365 |
| Eco47I | GGWCC | 3 cut(s) | 404, 413, 425 |
| Eco57I | CTGAAG | 1 cut(s) | 1092 |
| Eco91I | GGTNACC | 1 cut(s) | 875 |
| EcoO65I | GGTNACC | 1 cut(s) | 875 |
| EcoRII | CCWGG | 2 cut(s) | 963, 976 |
| EcoT14I | CCWWGG | 2 cut(s) | 1090, 1149 |
| EcoT38I | GRGCYC | 1 cut(s) | 365 |
| ErhI | CCWWGG | 2 cut(s) | 1090, 1149 |
| Esp3I | CGTCTC | 1 cut(s) | 703 |
| FaeI | CATG | 3 cut(s) | 118, 493, 947 |
| FaqI | GGGAC | 5 cut(s) | 74, 163, 746, 892, 1108 |
| FatI | CATG | 3 cut(s) | 114, 489, 943 |
| FauI | CCCGC | 1 cut(s) | 343 |
| FauNDI | CATATG | 2 cut(s) | 519, 1057 |
| FblI | GTMKAC | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 9 cut(s) | 32, 255, 339, 385, 724, 956, 971, 1106, 1113 |
| FokI | GGATG | 2 cut(s) | 506, 1204 |
| FriOI | GRGCYC | 1 cut(s) | 365 |
| Fsp4HI | GCNGC | 9 cut(s) | 32, 255, 339, 385, 724, 956, 971, 1106, 1113 |
| FspBI | CTAG | 3 cut(s) | 141, 893, 1010 |
| GlaI | GCGC | 1 cut(s) | 253 |
| GluI | GCNGC | 9 cut(s) | 32, 255, 339, 385, 724, 956, 971, 1106, 1113 |
| GsuI | CTGGAG | 1 cut(s) | 554 |
| HaeIII | GGCC | 3 cut(s) | 320, 737, 783 |
| HapII | CCGG | 5 cut(s) | 321, 342, 543, 638, 880 |
| HgaI | GACGC | 1 cut(s) | 538 |
| HhaI | GCGC | 1 cut(s) | 254 |
| Hin1II | CATG | 3 cut(s) | 118, 493, 947 |
| Hin6I | GCGC | 1 cut(s) | 252 |
| HinP1I | GCGC | 1 cut(s) | 252 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HindIII | AAGCTT | 1 cut(s) | 689 |
| HinfI | GANTC | 5 cut(s) | 94, 278, 369, 1096, 1186 |
| HpaII | CCGG | 5 cut(s) | 321, 342, 543, 638, 880 |
| HphI | GGTGA | 3 cut(s) | 26, 100, 1078 |
| Hpy166II | GTNNAC | 5 cut(s) | 416, 487, 503, 849, 983 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 264 |
| Hpy188III | TCNNGA | 2 cut(s) | 366, 1183 |
| Hpy8I | GTNNAC | 5 cut(s) | 416, 487, 503, 849, 983 |
| HpyAV | CCTTC | 1 cut(s) | 149 |
| HpyCH4III | ACNGT | 3 cut(s) | 65, 872, 1174 |
| HpyCH4IV | ACGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 3 cut(s) | 40, 674, 1108 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 37, 251, 529, 780 |
| HpyF3I | CTNAG | 1 cut(s) | 567 |
| HpySE526I | ACGT | 1 cut(s) | 202 |
| Hsp92II | CATG | 3 cut(s) | 118, 493, 947 |
| HspAI | GCGC | 1 cut(s) | 252 |
| KroI | GCCGGC | 2 cut(s) | 320, 542 |
| KroNI | GCCGGC | 2 cut(s) | 322, 544 |
| Kzo9I | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| LmnI | GCTCC | 2 cut(s) | 368, 967 |
| Lsp1109I | GCAGC | 6 cut(s) | 325, 710, 942, 957, 1092, 1099 |
| LweI | GCATC | 2 cut(s) | 43, 55 |
| MaeI | CTAG | 3 cut(s) | 141, 893, 1010 |
| MaeII | ACGT | 1 cut(s) | 202 |
| MaeIII | GTNAC | 5 cut(s) | 203, 311, 627, 875, 1084 |
| MalI | GATC | 4 cut(s) | 56, 261, 1017, 1065 |
| MboI | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| MfeI | CAATTG | 1 cut(s) | 675 |
| MflI | RGATCY | 1 cut(s) | 1063 |
| MhlI | GDGCHC | 2 cut(s) | 365, 816 |
| MlyI | GAGTC | 2 cut(s) | 1090, 1180 |
| MmeI | TCCRAC | 1 cut(s) | 489 |
| MroNI | GCCGGC | 2 cut(s) | 320, 542 |
| MseI | TTAA | 5 cut(s) | 581, 587, 1047, 1128, 1261 |
| MslI | CAYNNNNRTG | 2 cut(s) | 113, 273 |
| MspA1I | CMGCKG | 2 cut(s) | 338, 384 |
| MspI | CCGG | 5 cut(s) | 321, 342, 543, 638, 880 |
| MspR9I | CCNGG | 3 cut(s) | 638, 965, 978 |
| MunI | CAATTG | 1 cut(s) | 675 |
| MvaI | CCWGG | 2 cut(s) | 965, 978 |
| MvnI | CGCG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 37, 251, 529, 780 |
| NaeI | GCCGGC | 2 cut(s) | 322, 544 |
| NciI | CCSGG | 1 cut(s) | 638 |
| NdeI | CATATG | 2 cut(s) | 519, 1057 |
| NdeII | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| NgoMIV | GCCGGC | 2 cut(s) | 320, 542 |
| NlaIII | CATG | 3 cut(s) | 118, 493, 947 |
| NlaIV | GGNNCC | 2 cut(s) | 364, 685 |
| NmuCI | GTSAC | 2 cut(s) | 627, 1084 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 474 |
| PdiI | GCCGGC | 2 cut(s) | 322, 544 |
| PfeI | GAWTC | 3 cut(s) | 94, 278, 369 |
| PflFI | GACNNNGTC | 1 cut(s) | 482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 653 |
| PfoI | TCCNGGA | 1 cut(s) | 636 |
| PkrI | GCNGC | 9 cut(s) | 33, 256, 340, 386, 725, 957, 972, 1107, 1114 |
| PleI | GAGTC | 2 cut(s) | 1090, 1180 |
| PpsI | GAGTC | 2 cut(s) | 1090, 1180 |
| PshAI | GACNNNNGTC | 1 cut(s) | 758 |
| Psp6I | CCWGG | 2 cut(s) | 963, 976 |
| PspEI | GGTNACC | 1 cut(s) | 875 |
| PspGI | CCWGG | 2 cut(s) | 963, 976 |
| PspN4I | GGNNCC | 2 cut(s) | 364, 685 |
| PspPI | GGNCC | 6 cut(s) | 318, 404, 413, 425, 736, 782 |
| PstI | CTGCAG | 1 cut(s) | 1110 |
| PstNI | CAGNNNCTG | 1 cut(s) | 970 |
| PsuI | RGATCY | 1 cut(s) | 1063 |
| PsyI | GACNNNGTC | 1 cut(s) | 482 |
| RsaI | GTAC | 2 cut(s) | 891, 995 |
| RsaNI | GTAC | 2 cut(s) | 890, 994 |
| RseI | CAYNNNNRTG | 2 cut(s) | 113, 273 |
| SalI | GTCGAC | 1 cut(s) | 485 |
| SaqAI | TTAA | 5 cut(s) | 581, 587, 1047, 1128, 1261 |
| SatI | GCNGC | 9 cut(s) | 32, 255, 339, 385, 724, 956, 971, 1106, 1113 |
| Sau3AI | GATC | 4 cut(s) | 54, 259, 1015, 1063 |
| Sau96I | GGNCC | 6 cut(s) | 318, 404, 413, 425, 736, 782 |
| SchI | GAGTC | 2 cut(s) | 1090, 1180 |
| ScrFI | CCNGG | 3 cut(s) | 638, 965, 978 |
| SduI | GDGCHC | 2 cut(s) | 365, 816 |
| SfaNI | GCATC | 2 cut(s) | 43, 55 |
| SfcI | CTRYAG | 2 cut(s) | 190, 1106 |
| SinI | GGWCC | 3 cut(s) | 404, 413, 425 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 113, 273 |
| SpeI | ACTAGT | 2 cut(s) | 140, 892 |
| SsiI | CCGC | 6 cut(s) | 31, 250, 255, 336, 384, 564 |
| SspMI | CTAG | 3 cut(s) | 141, 893, 1010 |
| StyD4I | CCNGG | 3 cut(s) | 636, 963, 976 |
| StyI | CCWWGG | 2 cut(s) | 1090, 1149 |
| TaaI | ACNGT | 3 cut(s) | 65, 872, 1174 |
| TaiI | ACGT | 1 cut(s) | 205 |
| TaqI | TCGA | 5 cut(s) | 49, 128, 212, 486, 816 |
| TauI | GCSGC | 3 cut(s) | 34, 257, 387 |
| TfiI | GAWTC | 3 cut(s) | 94, 278, 369 |
| Tru1I | TTAA | 5 cut(s) | 581, 587, 1047, 1128, 1261 |
| Tru9I | TTAA | 5 cut(s) | 581, 587, 1047, 1128, 1261 |
| TscAI | CASTG | 2 cut(s) | 70, 1177 |
| TseFI | GTSAC | 2 cut(s) | 627, 1084 |
| TseI | GCWGC | 6 cut(s) | 338, 723, 955, 970, 1105, 1112 |
| Tsp45I | GTSAC | 2 cut(s) | 627, 1084 |
| TspDTI | ATGAA | 3 cut(s) | 582, 720, 1074 |
| TspGWI | ACGGA | 1 cut(s) | 438 |
| TspRI | CASTG | 2 cut(s) | 70, 1177 |
| Tth111I | GACNNNGTC | 1 cut(s) | 482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 3 cut(s) | 404, 413, 425 |
| XapI | RAATTY | 4 cut(s) | 589, 641, 1130, 1136 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 289 |
| XmiI | GTMKAC | 1 cut(s) | 486 |
| XspI | CTAG | 3 cut(s) | 141, 893, 1010 |