FvH4_1g04892

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Forward (+)
2606958 .. 2609412
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04892.t1

Sequence Viewer

Length: 1368 bp
ATGTCTCCCAAACACACACTCAACCTAGCCAACAGATCCAACGATGGTCACCGGCTTCGACGCTGCCGTGAACCACCGCGTAAGGCGAAGAAGAAGAAGAGAAGTAAGAAGTTGAAGTTGAAAGAGTCGGAGGCTAATAAGTCTCTGTACATATGCCACATCGAATACCACCCTGAAAGGCGCGTCTCTTACGTTGTTCGTTCCATCAAATTGTCCGATTTGTTGTCATCAGATTCGGTTGATGGTTTGCATTTACAGCAGGTCGCTTACAAGGCCGCCGGGGATGGGGATGAAGAACTCCCCTCTCTTGTGGGTTGCGGTGTGTTTGGCTCCCAAATCGTTTTCGCCGCCGGCGTGACACCTGCCGTCCGCCTTTTCGCTGCACGCCTCCCCAACCCTGTTTGGCATAGAGATGTCTATGTCTATGAAACTGACCCCAACAAGCAGGCTAGTGATACTTCTGTGATTCAGAAGATGGATGCCAAATTGGTTCAAGGCAAACATGTTCCCGTGATGGTGGAGTTGGGTGGCAAACTGTATGCACTTTCGTATGATACGGTATCTGATCCTCCCTCCTTCGAGGTTTTCGATCCCACAATAGGGACTTGGTCTGCTTTACCGGAGCCTCCATTCTTCCAACAATATGGTCAGTATCACCGCGGTGGCACCTTGTCCTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGAGTAGATGTCCTGTCTTCTGCTTCGACGTAGCTCACCCTCGCAGAGAATGGAGGTTAGTCCATTCCATGTGCCAACGCGGCCCTTTCCCTTTTGTTAGCGGAGCTCTGGTCCTGGACCTCCCCGGTGACAACAACAATAACAAGAAGTTAATGTTTGCCTATGGCGGTACTCGTTGTTGGAATCTAGGAGCTTATATTATGTTTTTGGATAAAAATCGAGAATCTCTCACACAAATTGCTGACTTGAAGCTGCCAAGGTTGCCTGAGGAGTTTGAATTTGCAAAGAGATGTTTCCTCCTCCATATAGGAGGTCAGAAAGCCTGCCTTGTTGCCCCTTCAATGTGTCCCCCAGAGGAACAATTACCTAAATTTAATCAAGTTGGGAGTCATAAGACAAGGGGTGTTGCCATTCCGTTTCGATTTGAAGTTGATATCACCAAGATCGACAACGTGGACGCCAAGAATTGTTTGACTCTCCAGTTCATGCCTACTCGCATCTTCGAATTCTGTACCAACCCATCCACTTTTCCTAGTCCTCGAGCTCATGGTTGCTTTGTGCTGGGAGCTGGGTTTGCACCAGTTCGCGGTACTGATGTGTGTATTCATCAGGGGCATTACTATGATATATGCGAAGAGGTTGAAATCAAGAGGTGTTAA

Protein Analysis

456

Amino Acids

51.19

Weight (kDa)

8.99

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 162 - 257 2.4e-11 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 2 cut(s) 250, 370
AccB1I GGYRCC 2 cut(s) 665, 689
AccII CGCG 5 cut(s) 79, 183, 660, 789, 1296
AclWI GGATC 3 cut(s) 30, 560, 584
AcsI RAATTY 3 cut(s) 986, 1079, 1214
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 4 cut(s) 149, 880, 1222, 1300
AfiI CCNNNNNNNGG 4 cut(s) 285, 599, 600, 1295
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 8 cut(s) 115, 121, 494, 958, 986, 1050, 1136, 1352
AjnI CCWGG 1 cut(s) 822
AleI CACNNNNGTG 1 cut(s) 660
AluBI AGCT 6 cut(s) 743, 815, 902, 961, 1253, 1277
AluI AGCT 6 cut(s) 743, 815, 902, 961, 1253, 1277
Alw21I GWGCWC 2 cut(s) 817, 1255
Alw26I GTCTC 4 cut(s) 9, 147, 190, 711
AlwI GGATC 3 cut(s) 30, 560, 584
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 1248
AoxI GGCC 2 cut(s) 273, 790
ApeKI GCWGC 3 cut(s) 63, 380, 961
ApoI RAATTY 3 cut(s) 986, 1079, 1214
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 791, 820, 826
AsuC2I CCSGG 2 cut(s) 280, 834
AsuHPI GGTGA 5 cut(s) 41, 647, 737, 848, 1138
AsuII TTCGAA 1 cut(s) 1212
AvaI CYCGRG 1 cut(s) 1248
AvaII GGWCC 2 cut(s) 820, 826
AxyI CCTNAGG 1 cut(s) 975
BaeI ACNNNNGTAYC 4 cut(s) 447, 480, 1290, 1323
BanI GGYRCC 2 cut(s) 665, 689
BanII GRGCYC 2 cut(s) 817, 1255
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 2 cut(s) 817, 1255
BbvI GCAGC 3 cut(s) 50, 367, 948
BccI CCATC 7 cut(s) 38, 212, 236, 278, 469, 508, 1237
BceAI ACGGC 2 cut(s) 51, 350
BciT130I CCWGG 1 cut(s) 824
BcnI CCSGG 2 cut(s) 280, 834
BcoDI GTCTC 4 cut(s) 9, 147, 190, 711
BfaI CTAG 4 cut(s) 26, 450, 896, 1242
BfuAI ACCTGC 2 cut(s) 250, 370
BglI GCCNNNNNGGC 1 cut(s) 789
BisI GCNGC 6 cut(s) 64, 276, 348, 381, 790, 962
BlsI GCNGC 6 cut(s) 65, 277, 349, 382, 791, 963
Bme1390I CCNGG 3 cut(s) 280, 824, 834
Bme18I GGWCC 2 cut(s) 820, 826
BmeT110I CYCGRG 1 cut(s) 1248
BmgT120I GGNCC 3 cut(s) 791, 820, 826
BmiI GGNNCC 4 cut(s) 331, 624, 667, 691
BmrFI CCNGG 3 cut(s) 280, 824, 834
BmsI GCATC 2 cut(s) 469, 1215
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 921, 953
BpmI CTGGAG 1 cut(s) 1172
Bpu14I TTCGAA 1 cut(s) 1212
BpuMI CCSGG 2 cut(s) 280, 834
BsaBI GATNNNNATC 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 1167
BsaJI CCNNGG 4 cut(s) 279, 658, 832, 965
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 599, 600, 1295
Bse118I RCCGGY 2 cut(s) 51, 350
Bse1I ACTGG 3 cut(s) 691, 1189, 1289
Bse21I CCTNAGG 1 cut(s) 975
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 4 cut(s) 279, 658, 832, 965
BseGI GGATG 4 cut(s) 289, 295, 484, 1229
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 285, 599, 600, 1295
BseMII CTCAG 2 cut(s) 722, 966
BseNI ACTGG 3 cut(s) 691, 1189, 1289
BseRI GAGGAG 2 cut(s) 992, 998
BseXI GCAGC 3 cut(s) 50, 367, 948
BseYI CCCAGC 2 cut(s) 1270, 1277
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 5 cut(s) 79, 183, 660, 789, 1296
BshFI GGCC 2 cut(s) 275, 792
BshNI GGYRCC 2 cut(s) 665, 689
BsiHKAI GWGCWC 2 cut(s) 817, 1255
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 5 cut(s) 52, 279, 351, 620, 834
BslFI GGGAC 2 cut(s) 616, 1041
BslI CCNNNNNNNGG 4 cut(s) 285, 599, 600, 1295
BsmAI GTCTC 4 cut(s) 9, 147, 190, 711
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 616, 1041
BsnI GGCC 2 cut(s) 275, 792
BsoBI CYCGRG 1 cut(s) 1248
Bsp119I TTCGAA 1 cut(s) 1212
Bsp1286I GDGCHC 2 cut(s) 817, 1255
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 4 cut(s) 35, 565, 589, 1152
BspANI GGCC 2 cut(s) 275, 792
BspCNI CTCAG 2 cut(s) 721, 967
BspFNI CGCG 5 cut(s) 79, 183, 660, 789, 1296
BspLI GGNNCC 4 cut(s) 331, 624, 667, 691
BspMI ACCTGC 2 cut(s) 250, 370
BspPI GGATC 3 cut(s) 30, 560, 584
BspT104I TTCGAA 1 cut(s) 1212
BspT107I GGYRCC 2 cut(s) 665, 689
BsrFI RCCGGY 2 cut(s) 51, 350
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 3 cut(s) 691, 1189, 1289
BssAI RCCGGY 2 cut(s) 51, 350
BssECI CCNNGG 4 cut(s) 279, 658, 832, 965
BssMI GATC 4 cut(s) 35, 565, 589, 1152
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 1 cut(s) 965
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 2 cut(s) 537, 559
Bst6I CTCTTC 2 cut(s) 92, 1338
BstACI GRCGYC 1 cut(s) 1167
BstAUI TGTACA 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 1212
BstC8I GCNNGC 4 cut(s) 352, 385, 447, 1033
BstDEI CTNAG 2 cut(s) 708, 975
BstDSI CCRYGG 1 cut(s) 658
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 4 cut(s) 289, 295, 484, 1229
BstFNI CGCG 5 cut(s) 79, 183, 660, 789, 1296
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 4 cut(s) 38, 568, 592, 1155
BstMAI GTCTC 4 cut(s) 9, 147, 190, 711
BstMBI GATC 4 cut(s) 35, 565, 589, 1152
BstMWI GCNNNNNNNGC 5 cut(s) 256, 272, 789, 970, 1283
BstNI CCWGG 1 cut(s) 824
BstNSI RCATGY 1 cut(s) 506
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 278, 822, 832
BstUI CGCG 5 cut(s) 79, 183, 660, 789, 1296
BstV1I GCAGC 3 cut(s) 50, 367, 948
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 1 cut(s) 35
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 2 cut(s) 275, 792
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 4 cut(s) 289, 295, 484, 1229
BveI ACCTGC 2 cut(s) 250, 370
Cac8I GCNNGC 4 cut(s) 352, 385, 447, 1033
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 2 cut(s) 51, 350
Cfr13I GGNCC 3 cut(s) 791, 820, 826
Cfr42I CCGCGG 1 cut(s) 661
CseI GACGC 3 cut(s) 69, 172, 1175
Csp6I GTAC 4 cut(s) 148, 879, 1221, 1299
CviAII CATG 4 cut(s) 503, 778, 1195, 1256
CviQI GTAC 4 cut(s) 148, 879, 1221, 1299
DdeI CTNAG 2 cut(s) 708, 975
DpnI GATC 4 cut(s) 37, 567, 591, 1154
DpnII GATC 4 cut(s) 35, 565, 589, 1152
Eam1104I CTCTTC 2 cut(s) 92, 1338
EarI CTCTTC 2 cut(s) 92, 1338
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 2 cut(s) 815, 1253
Eco130I CCWWGG 1 cut(s) 965
Eco24I GRGCYC 2 cut(s) 817, 1255
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 2 cut(s) 820, 826
Eco53kI GAGCTC 2 cut(s) 815, 1253
Eco81I CCTNAGG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 1248
Eco91I GGTNACC 1 cut(s) 47
EcoICRI GAGCTC 2 cut(s) 815, 1253
EcoO65I GGTNACC 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 1214
EcoRII CCWGG 1 cut(s) 822
EcoRV GATATC 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 965
EcoT38I GRGCYC 2 cut(s) 817, 1255
ErhI CCWWGG 1 cut(s) 965
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 4 cut(s) 506, 781, 1198, 1259
FalI AAGNNNNNCTT 2 cut(s) 1020, 1052
FaqI GGGAC 2 cut(s) 616, 1041
FatI CATG 4 cut(s) 502, 777, 1194, 1255
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 6 cut(s) 64, 276, 348, 381, 790, 962
FokI GGATG 4 cut(s) 296, 302, 491, 1216
FriOI GRGCYC 2 cut(s) 817, 1255
Fsp4HI GCNGC 6 cut(s) 64, 276, 348, 381, 790, 962
FspBI CTAG 4 cut(s) 26, 450, 896, 1242
GlaI GCGC 1 cut(s) 182
GluI GCNGC 6 cut(s) 64, 276, 348, 381, 790, 962
GsaI CCCAGC 2 cut(s) 1274, 1281
GsuI CTGGAG 1 cut(s) 1172
HaeIII GGCC 2 cut(s) 275, 792
HapII CCGG 5 cut(s) 52, 279, 351, 620, 834
HgaI GACGC 3 cut(s) 69, 172, 1175
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 4 cut(s) 506, 781, 1198, 1259
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 7 cut(s) 125, 233, 466, 892, 932, 1096, 1183
HpaII CCGG 5 cut(s) 52, 279, 351, 620, 834
HphI GGTGA 5 cut(s) 41, 647, 737, 848, 1138
Hpy166II GTNNAC 2 cut(s) 71, 1165
Hpy188I TCNGA 7 cut(s) 130, 217, 232, 471, 565, 711, 1026
Hpy188III TCNNGA 2 cut(s) 929, 1357
Hpy8I GTNNAC 2 cut(s) 71, 1165
Hpy99I CGWCG 2 cut(s) 63, 740
HpyAV CCTTC 2 cut(s) 586, 1056
HpyCH4III ACNGT 2 cut(s) 537, 559
HpyCH4IV ACGT 3 cut(s) 192, 738, 1161
HpyCH4V TGCA 6 cut(s) 250, 383, 542, 680, 992, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 256, 272, 789, 970, 1283
HpyF3I CTNAG 2 cut(s) 708, 975
HpySE526I ACGT 3 cut(s) 192, 738, 1161
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 4 cut(s) 506, 781, 1198, 1259
HspAI GCGC 1 cut(s) 181
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
KspI CCGCGG 1 cut(s) 661
Kzo9I GATC 4 cut(s) 35, 565, 589, 1152
LmnI GCTCC 5 cut(s) 335, 622, 812, 899, 1274
Lsp1109I GCAGC 3 cut(s) 50, 367, 948
LweI GCATC 2 cut(s) 469, 1215
MaeI CTAG 4 cut(s) 26, 450, 896, 1242
MaeII ACGT 3 cut(s) 192, 738, 1161
MaeIII GTNAC 4 cut(s) 47, 355, 682, 836
MalI GATC 4 cut(s) 37, 567, 591, 1154
MboI GATC 4 cut(s) 35, 565, 589, 1152
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 817, 1255
MluCI AATT 8 cut(s) 209, 485, 945, 986, 1070, 1079, 1174, 1214
MlyI GAGTC 3 cut(s) 134, 1105, 1177
MmeI TCCRAC 4 cut(s) 63, 108, 661, 869
MreI CGCCGGCG 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 3 cut(s) 860, 1083, 1366
MslI CAYNNNNRTG 4 cut(s) 411, 660, 695, 1329
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 5 cut(s) 52, 279, 351, 620, 834
MspR9I CCNGG 3 cut(s) 280, 824, 834
MvaI CCWGG 1 cut(s) 824
MvnI CGCG 5 cut(s) 79, 183, 660, 789, 1296
MwoI GCNNNNNNNGC 5 cut(s) 256, 272, 789, 970, 1283
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 2 cut(s) 280, 834
NdeI CATATG 1 cut(s) 152
NdeII GATC 4 cut(s) 35, 565, 589, 1152
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 4 cut(s) 506, 781, 1198, 1259
NlaIV GGNNCC 4 cut(s) 331, 624, 667, 691
NmuCI GTSAC 3 cut(s) 47, 355, 836
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 1212
OliI CACNNNNGTG 1 cut(s) 660
PaeR7I CTCGAG 1 cut(s) 1248
PaqCI CACCTGC 1 cut(s) 370
PciI ACATGT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 351, 585
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 233, 466, 892, 932
PflFI GACNNNGTC 1 cut(s) 607
PfoI TCCNGGA 1 cut(s) 822
PkrI GCNGC 6 cut(s) 65, 277, 349, 382, 791, 963
PleI GAGTC 3 cut(s) 133, 1104, 1177
PpsI GAGTC 3 cut(s) 133, 1104, 1177
PscI ACATGT 1 cut(s) 502
Psp124BI GAGCTC 2 cut(s) 817, 1255
Psp6I CCWGG 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 47
PspFI CCCAGC 2 cut(s) 1270, 1277
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 4 cut(s) 331, 624, 667, 691
PspPI GGNCC 3 cut(s) 791, 820, 826
PspXI VCTCGAGB 1 cut(s) 1248
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 607
RsaI GTAC 4 cut(s) 149, 880, 1222, 1300
RsaNI GTAC 4 cut(s) 148, 879, 1221, 1299
RseI CAYNNNNRTG 4 cut(s) 411, 660, 695, 1329
SacI GAGCTC 2 cut(s) 817, 1255
SacII CCGCGG 1 cut(s) 661
SaqAI TTAA 3 cut(s) 860, 1083, 1366
SatI GCNGC 6 cut(s) 64, 276, 348, 381, 790, 962
Sau3AI GATC 4 cut(s) 35, 565, 589, 1152
Sau96I GGNCC 3 cut(s) 791, 820, 826
SchI GAGTC 3 cut(s) 134, 1105, 1177
ScrFI CCNGG 3 cut(s) 280, 824, 834
SduI GDGCHC 2 cut(s) 817, 1255
SfaNI GCATC 2 cut(s) 469, 1215
Sfr274I CTCGAG 1 cut(s) 1248
Sfr303I CCGCGG 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 1212
SgrAI CRCCGGYG 1 cut(s) 350
SgrBI CCGCGG 1 cut(s) 661
SinI GGWCC 2 cut(s) 820, 826
SlaI CTCGAG 1 cut(s) 1248
SmiMI CAYNNNNRTG 4 cut(s) 411, 660, 695, 1329
SmlI CTYRAG 1 cut(s) 1248
SmoI CTYRAG 1 cut(s) 1248
Sse9I AATT 8 cut(s) 209, 485, 945, 986, 1070, 1079, 1174, 1214
SspMI CTAG 4 cut(s) 26, 450, 896, 1242
SstI GAGCTC 2 cut(s) 817, 1255
StyD4I CCNGG 3 cut(s) 278, 822, 832
StyI CCWWGG 1 cut(s) 965
TaaI ACNGT 2 cut(s) 537, 559
TaiI ACGT 3 cut(s) 195, 741, 1164
TasI AATT 8 cut(s) 209, 485, 945, 986, 1070, 1079, 1174, 1214
TatI WGTACW 1 cut(s) 147
TauI GCSGC 3 cut(s) 278, 350, 792
TfiI GAWTC 4 cut(s) 233, 466, 892, 932
Tru1I TTAA 3 cut(s) 860, 1083, 1366
Tru9I TTAA 3 cut(s) 860, 1083, 1366
TseFI GTSAC 3 cut(s) 47, 355, 836
TseI GCWGC 3 cut(s) 63, 380, 961
Tsp45I GTSAC 3 cut(s) 47, 355, 836
TspDTI ATGAA 4 cut(s) 306, 441, 1183, 1304
TspGWI ACGGA 1 cut(s) 1113
Tth111I GACNNNGTC 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 820, 826
XapI RAATTY 3 cut(s) 986, 1079, 1214
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 1248
XspI CTAG 4 cut(s) 26, 450, 896, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.