Rroxscaffold_2G00152360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000213
Physical Location & Seq
Forward (+)
89346487 .. 89353175
6689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152360.1

Sequence Viewer

Length: 771 bp
ATGGGTTCGATCGATGGTGTTGGATCGTGGGGTCGGGGAACCCGGATCGGAAGATCTCTCGAGAAGGTGACGTACGACGAGGGTGATGGGAACGATGACGAACTAGGCCCTAATCGGGCCGCCGGGCCTAGAGATCTCCTTGGTGACAGCCCTGTTGGGCTTAGTCATTGGGCTGAGAATTTGACCACTCCCACGGTGGCTAATAGGGCCATCGTACATCTCCGAGGTAAAGGTGATTGCGGTGTTTTGGGCTACAACTTTGTTTTTGCCGCCGGCTCGAAACGCAACTTCCGACCGTATGGTCCATTCGACATAGATTACAGCACACGAAGCTTCGTCTTTGATACCAAGGACCCCAAACACGGCATAGTCAAGATGGAGGAGACTTTACACAAAGGGAAATGTCGGCCGTTAATGCAGAATTTGACCACTCCCACGGTGGCTAATAGGGCCATCGTACATCTCCGAGGTAAAGGTGATTGCGGTGTTTTGGGCTACAACTTTGTTTTTGCCAGCGGCTCGAAACGCGACTTCCGACCGTATGGTCCATTCAGCATAGATTACAGCACAGAAGCTTCTGTCTTTGATACCAAGGACCCCAAACACGGCATAGTCAAGATGGAGGAGACTTTACACAAAGGGAAATGTCAGCCGTTAATGGCTGAGGTGGCCGGAAAACTTTACACTTTGTCCAGTGGTCCCAATATTCCTGGAAGTTTCGAGGTATTTGACCCCAAAGTCCCAAACAGGGGACTTGGTCGCCTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.9

Weight (kDa)

8.89

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 300, 543, 737
AccII CGCG 1 cut(s) 528
AciI CCGC 5 cut(s) 120, 240, 270, 483, 516
AclWI GGATC 2 cut(s) 31, 53
AcoI YGGCCR 2 cut(s) 407, 669
AcsI RAATTY 2 cut(s) 178, 421
AfaI GTAC 3 cut(s) 74, 216, 459
AfiI CCNNNNNNNGG 5 cut(s) 115, 362, 605, 748, 749
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 2 cut(s) 333, 575
AluI AGCT 2 cut(s) 333, 575
Alw26I GTCTC 2 cut(s) 377, 620
AlwI GGATC 2 cut(s) 31, 53
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 7 cut(s) 106, 117, 125, 207, 407, 450, 669
ApoI RAATTY 2 cut(s) 178, 421
AsuC2I CCSGG 2 cut(s) 43, 124
AsuHPI GGTGA 5 cut(s) 79, 95, 155, 245, 488
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 5 cut(s) 302, 352, 545, 595, 698
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbvCI CCTCAGC 1 cut(s) 663
BccI CCATC 6 cut(s) 8, 80, 218, 370, 461, 613
BceAI ACGGC 4 cut(s) 379, 394, 622, 637
BciT130I CCWGG 1 cut(s) 711
BcnI CCSGG 2 cut(s) 43, 124
BcoDI GTCTC 2 cut(s) 377, 620
BfaI CTAG 2 cut(s) 104, 129
BglII AGATCT 2 cut(s) 53, 133
BisI GCNGC 3 cut(s) 120, 270, 517
BlsI GCNGC 3 cut(s) 121, 271, 518
Bme1390I CCNGG 3 cut(s) 43, 124, 711
Bme18I GGWCC 5 cut(s) 302, 352, 545, 595, 698
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 4 cut(s) 40, 354, 597, 700
BmrFI CCNGG 3 cut(s) 43, 124, 711
Bpu10I CCTNAGC 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 43, 124
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 7 cut(s) 139, 192, 223, 348, 435, 466, 591
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 362, 605, 748, 749
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 711
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 7 cut(s) 139, 192, 223, 348, 435, 466, 591
BseLI CCNNNNNNNGG 5 cut(s) 115, 362, 605, 748, 749
BseMII CTCAG 2 cut(s) 165, 654
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 2 cut(s) 395, 638
BseX3I CGGCCG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 528
Bsh1285I CGRYCG 4 cut(s) 12, 296, 410, 539
BshFI GGCC 7 cut(s) 108, 119, 127, 209, 409, 452, 671
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 4 cut(s) 12, 296, 410, 539
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 4 cut(s) 43, 123, 273, 672
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 3 cut(s) 684, 725, 765
BslI CCNNNNNNNGG 5 cut(s) 115, 362, 605, 748, 749
BsmAI GTCTC 2 cut(s) 377, 620
BsmFI GGGAC 3 cut(s) 684, 725, 765
BsnI GGCC 7 cut(s) 108, 119, 127, 209, 409, 452, 671
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 5 cut(s) 9, 23, 45, 53, 133
BspACI CCGC 5 cut(s) 120, 240, 270, 483, 516
BspANI GGCC 7 cut(s) 108, 119, 127, 209, 409, 452, 671
BspCNI CTCAG 2 cut(s) 166, 655
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 4 cut(s) 40, 354, 597, 700
BspPI GGATC 2 cut(s) 31, 53
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 7 cut(s) 139, 192, 223, 348, 435, 466, 591
BssMI GATC 5 cut(s) 9, 23, 45, 53, 133
BssT1I CCWWGG 3 cut(s) 139, 348, 591
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 4 cut(s) 196, 297, 439, 540
BstC8I GCNNGC 2 cut(s) 274, 514
BstDEI CTNAG 3 cut(s) 161, 174, 663
BstDSI CCRYGG 2 cut(s) 192, 435
BstFNI CGCG 1 cut(s) 528
BstKTI GATC 5 cut(s) 12, 26, 48, 56, 136
BstMAI GTCTC 2 cut(s) 377, 620
BstMBI GATC 5 cut(s) 9, 23, 45, 53, 133
BstMCI CGRYCG 4 cut(s) 12, 296, 410, 539
BstMWI GCNNNNNNNGC 7 cut(s) 206, 282, 330, 415, 449, 525, 668
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 3 cut(s) 41, 122, 709
BstUI CGCG 1 cut(s) 528
BstX2I RGATCY 2 cut(s) 53, 133
BstYI RGATCY 2 cut(s) 53, 133
BstZI CGGCCG 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 7 cut(s) 108, 119, 127, 209, 409, 452, 671
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 2 cut(s) 192, 435
BtsIMutI CAGTG 1 cut(s) 700
Cac8I GCNNGC 2 cut(s) 274, 514
Cfr10I RCCGGY 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 3 cut(s) 73, 215, 458
CviQI GTAC 3 cut(s) 73, 215, 458
DdeI CTNAG 3 cut(s) 161, 174, 663
DpnI GATC 5 cut(s) 11, 25, 47, 55, 135
DpnII GATC 5 cut(s) 9, 23, 45, 53, 133
DrdI GACNNNNNNGTC 3 cut(s) 300, 543, 737
DseDI GACNNNNNNGTC 3 cut(s) 300, 543, 737
EaeI YGGCCR 2 cut(s) 407, 669
EagI CGGCCG 1 cut(s) 407
EclXI CGGCCG 1 cut(s) 407
Eco130I CCWWGG 3 cut(s) 139, 348, 591
Eco47I GGWCC 5 cut(s) 302, 352, 545, 595, 698
Eco52I CGGCCG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 59
EcoO109I RGGNCCY 3 cut(s) 107, 352, 595
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 3 cut(s) 139, 348, 591
ErhI CCWWGG 3 cut(s) 139, 348, 591
FaiI YATR 6 cut(s) 300, 314, 368, 543, 557, 611
FaqI GGGAC 3 cut(s) 684, 725, 765
Fnu4HI GCNGC 3 cut(s) 120, 270, 517
Fsp4HI GCNGC 3 cut(s) 120, 270, 517
FspBI CTAG 2 cut(s) 104, 129
GluI GCNGC 3 cut(s) 120, 270, 517
HaeIII GGCC 7 cut(s) 108, 119, 127, 209, 409, 452, 671
HapII CCGG 4 cut(s) 43, 123, 273, 672
HindIII AAGCTT 2 cut(s) 331, 573
HpaII CCGG 4 cut(s) 43, 123, 273, 672
HphI GGTGA 5 cut(s) 79, 95, 155, 245, 488
Hpy188I TCNGA 5 cut(s) 50, 224, 293, 467, 536
Hpy188III TCNNGA 4 cut(s) 59, 61, 373, 616
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 4 cut(s) 196, 297, 439, 540
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 7 cut(s) 206, 282, 330, 415, 449, 525, 668
HpyF3I CTNAG 3 cut(s) 161, 174, 663
HpySE526I ACGT 1 cut(s) 71
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Kzo9I GATC 5 cut(s) 9, 23, 45, 53, 133
MaeI CTAG 2 cut(s) 104, 129
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 67, 143
MalI GATC 5 cut(s) 11, 25, 47, 55, 135
MboI GATC 5 cut(s) 9, 23, 45, 53, 133
MboII GAAGA 1 cut(s) 63
MflI RGATCY 2 cut(s) 53, 133
MluCI AATT 2 cut(s) 178, 421
MmeI TCCRAC 2 cut(s) 316, 559
MnlI CCTC 7 cut(s) 73, 218, 373, 461, 616, 658, 715
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 2 cut(s) 413, 656
MspA1I CMGCKG 1 cut(s) 516
MspI CCGG 4 cut(s) 43, 123, 273, 672
MspR9I CCNGG 3 cut(s) 43, 124, 711
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 7 cut(s) 206, 282, 330, 415, 449, 525, 668
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 2 cut(s) 43, 124
NdeII GATC 5 cut(s) 9, 23, 45, 53, 133
NgoMIV GCCGGC 1 cut(s) 272
NlaIV GGNNCC 4 cut(s) 40, 354, 597, 700
NmuCI GTSAC 2 cut(s) 67, 143
PaeR7I CTCGAG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 289, 532
PdiI GCCGGC 1 cut(s) 274
Pfl23II CGTACG 1 cut(s) 72
PflFI GACNNNGTC 1 cut(s) 756
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 3 cut(s) 121, 271, 518
Ple19I CGATCG 1 cut(s) 12
PpuMI RGGWCCY 2 cut(s) 352, 595
Psp5II RGGWCCY 2 cut(s) 352, 595
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspLI CGTACG 1 cut(s) 72
PspN4I GGNNCC 4 cut(s) 40, 354, 597, 700
PspPPI RGGWCCY 2 cut(s) 352, 595
PsuI RGATCY 2 cut(s) 53, 133
PsyI GACNNNGTC 1 cut(s) 756
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 3 cut(s) 74, 216, 459
RsaNI GTAC 3 cut(s) 73, 215, 458
SaqAI TTAA 2 cut(s) 413, 656
SatI GCNGC 3 cut(s) 120, 270, 517
Sau3AI GATC 5 cut(s) 9, 23, 45, 53, 133
ScrFI CCNGG 3 cut(s) 43, 124, 711
Sfr274I CTCGAG 1 cut(s) 59
SinI GGWCC 5 cut(s) 302, 352, 545, 595, 698
SlaI CTCGAG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 178, 421
SsiI CCGC 5 cut(s) 120, 240, 270, 483, 516
SspI AATATT 1 cut(s) 706
SspMI CTAG 2 cut(s) 104, 129
StyD4I CCNGG 3 cut(s) 41, 122, 709
StyI CCWWGG 3 cut(s) 139, 348, 591
TaaI ACNGT 4 cut(s) 196, 297, 439, 540
TaiI ACGT 1 cut(s) 74
TaqI TCGA 7 cut(s) 8, 12, 60, 278, 309, 521, 720
TasI AATT 2 cut(s) 178, 421
TauI GCSGC 3 cut(s) 122, 272, 519
Tru1I TTAA 2 cut(s) 413, 656
Tru9I TTAA 2 cut(s) 413, 656
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 2 cut(s) 67, 143
Tsp45I GTSAC 2 cut(s) 67, 143
TspRI CASTG 1 cut(s) 700
Tth111I GACNNNGTC 1 cut(s) 756
VpaK11BI GGWCC 5 cut(s) 302, 352, 545, 595, 698
XapI RAATTY 2 cut(s) 178, 421
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 436
XhoI CTCGAG 1 cut(s) 59
XspI CTAG 2 cut(s) 104, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.