Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000213

Physical Location & Seq

Genomic Coordinates Forward (+)

12676102 .. 12678863

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACCCAAAAATCGTTAGAAAGCTATGGTGAAGAAGAAGAAGGGCGGCATCTGCACAAGCATCGAAAGATCAGGGACAGTGAAGAAGAAACGGATTTTCGGGTGAAGAGGACAGGGATAAGCGCGGTGAAGAAGATTCAGATTGAGAAGACCAGTGAAGAAGAAGAAGGTAGTAAGTCCAAGTCCAAGTCCCTTTACATCTGTAGCTTTGAGCGTAACCAGTCGATTGATAAGAGTAAGAACTGGGGTGCTTATGCTGTCCGCGCCGCCGATCTGACTCATTTGTATGATTCCAATTCCAAATTGGAATTACGGCAAGTGGGTTACAGGGCCGGCGAAGACCTCCCCGCTGCCGGAGGCTGTGGTGTTTTGGGCTCCCGAATCCTTTTCGCCAGCGGCTTGAAACACAGCTTTGGACCTCGTGGTCCACCTTACGGACCAGAATCCAGCACACGAGCTTATGCCTTTGATACCTCCAACGACACCCACGACATAGTCGACATGGATGAGAGTTTACACGAGGGCAAACATGCTTTTATCAATCTCAAATCAACTCCTGATGCAATGTTTCGCACTGATAATGTAAAGTATGCATTAATCGGGCTTATGAGGGATCTTCGGGGAATTGCCATGGCCACAAATAGTCGCACAACGTTTGGGCTTCTGTTTGATTGGCTGTATCCTGCACACATGCCACTTCTTTTGAAAGGCATCTTGTACTGGTCTGACACACCAGAGTTATGGTGTGCCATTTTCTTAAGTTCTTGTTACTTGATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0019899 GO:0031267 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051020 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N

Protein Analysis

260

Amino Acids

29.31

Weight (kDa)

6.51

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica	MD02G1004600.v1.1
prunus_persica	Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis	pycom08g14630
rosa_chinensis	RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata	RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora	Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa	Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha	Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana	Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	2 cut(s)	125, 264
AciI	CCGC	6 cut(s)	46, 125, 262, 267, 348, 396
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	633
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	353, 434
AflII	CTTAAG	1 cut(s)	757
AgsI	TTSAA	2 cut(s)	403, 706
AluBI	AGCT	4 cut(s)	24, 207, 411, 458
AluI	AGCT	4 cut(s)	24, 207, 411, 458
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	2 cut(s)	330, 633
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	125, 266
AspS9I	GGNCC	4 cut(s)	330, 416, 425, 437
AsuHPI	GGTGA	3 cut(s)	41, 115, 139
AvaII	GGWCC	3 cut(s)	416, 425, 437
BalI	TGGCCA	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	377
BauI	CACGAG	3 cut(s)	420, 453, 518
BbsI	GAAGAC	2 cut(s)	155, 345
BbvI	GCAGC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciVI	GTATCC	1 cut(s)	690
BfmI	CTRYAG	2 cut(s)	202, 779
BfrI	CTTAAG	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	690
BisI	GCNGC	4 cut(s)	47, 267, 351, 397
BlsI	GCNGC	4 cut(s)	48, 268, 352, 398
Bme18I	GGWCC	3 cut(s)	416, 425, 437
BmgT120I	GGNCC	4 cut(s)	330, 416, 425, 437
BmiI	GGNNCC	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	4 cut(s)	58, 70, 550, 720
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	155, 345
BsaJI	CCNNGG	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 434
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	4 cut(s)	153, 220, 248, 725
Bse3DI	GCAATG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	353, 434
BseMI	GCAATG	1 cut(s)	570
BseNI	ACTGG	4 cut(s)	153, 220, 248, 725
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	2 cut(s)	38, 669
Bsh1236I	CGCG	2 cut(s)	125, 264
BshFI	GGCC	2 cut(s)	332, 635
BsiSI	CCGG	2 cut(s)	333, 354
BslFI	GGGAC	2 cut(s)	89, 175
BslI	CCNNNNNNNGG	2 cut(s)	353, 434
BsmFI	GGGAC	2 cut(s)	89, 175
BsnI	GGCC	2 cut(s)	332, 635
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	69, 271, 613
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	6 cut(s)	46, 125, 262, 267, 348, 396
BspANI	GGCC	2 cut(s)	332, 635
BspFNI	CGCG	2 cut(s)	125, 264
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	621
BspTI	CTTAAG	1 cut(s)	757
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	4 cut(s)	153, 220, 248, 725
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	3 cut(s)	69, 271, 613
BssSI	CACGAG	3 cut(s)	420, 453, 518
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	3 cut(s)	420, 453, 518
Bst4CI	ACNGT	2 cut(s)	80, 780
Bst6I	CTCTTC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	334, 394
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	125, 264
BstHHI	GCGC	2 cut(s)	125, 266
BstKTI	GATC	3 cut(s)	72, 274, 616
BstMBI	GATC	3 cut(s)	69, 271, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 263
BstNSI	RCATGY	2 cut(s)	533, 694
BstSFI	CTRYAG	2 cut(s)	202, 779
BstUI	CGCG	2 cut(s)	125, 264
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	155, 345
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	332, 635
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	3 cut(s)	85, 160, 573
Cac8I	GCNNGC	2 cut(s)	334, 394
CfoI	GCGC	2 cut(s)	125, 266
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	4 cut(s)	330, 416, 425, 437
Csp6I	GTAC	1 cut(s)	718
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	502, 530, 631, 691
CviQI	GTAC	1 cut(s)	718
DpnI	GATC	3 cut(s)	71, 273, 615
DpnII	GATC	3 cut(s)	69, 271, 613
DrdI	GACNNNNNNGTC	1 cut(s)	423
DseDI	GACNNNNNNGTC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	416, 425, 437
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	4 cut(s)	505, 533, 634, 694
FaqI	GGGAC	2 cut(s)	89, 175
FatI	CATG	4 cut(s)	501, 529, 630, 690
FauI	CCCGC	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	47, 267, 351, 397
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	4 cut(s)	47, 267, 351, 397
GlaI	GCGC	2 cut(s)	124, 265
GluI	GCNGC	4 cut(s)	47, 267, 351, 397
HaeIII	GGCC	2 cut(s)	332, 635
HapII	CCGG	2 cut(s)	333, 354
HhaI	GCGC	2 cut(s)	125, 266
Hin1II	CATG	4 cut(s)	505, 533, 634, 694
Hin6I	GCGC	2 cut(s)	123, 264
HinP1I	GCGC	2 cut(s)	123, 264
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	5 cut(s)	136, 277, 290, 381, 443
HpaII	CCGG	2 cut(s)	333, 354
HphI	GGTGA	3 cut(s)	41, 115, 139
Hpy166II	GTNNAC	3 cut(s)	428, 499, 515
Hpy188I	TCNGA	3 cut(s)	141, 276, 727
Hpy188III	TCNNGA	2 cut(s)	378, 557
Hpy8I	GTNNAC	3 cut(s)	428, 499, 515
HpyAV	CCTTC	2 cut(s)	35, 161
HpyCH4III	ACNGT	2 cut(s)	80, 780
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	4 cut(s)	55, 563, 593, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 263
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	4 cut(s)	505, 533, 634, 694
HspAI	GCGC	2 cut(s)	123, 264
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	69, 271, 613
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	4 cut(s)	58, 70, 550, 720
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	215, 323, 767
MalI	GATC	3 cut(s)	71, 273, 615
MboI	GATC	3 cut(s)	69, 271, 613
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	4 cut(s)	295, 302, 308, 624
MluNI	TGGCCA	1 cut(s)	635
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	102, 350, 353, 429, 484, 514, 603
Mox20I	TGGCCA	1 cut(s)	635
Mph1103I	ATGCAT	1 cut(s)	595
MroNI	GCCGGC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	2 cut(s)	596, 758
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	350, 396
MspCI	CTTAAG	1 cut(s)	757
MspI	CCGG	2 cut(s)	333, 354
MvnI	CGCG	2 cut(s)	125, 264
MwoI	GCNNNNNNNGC	2 cut(s)	52, 263
NaeI	GCCGGC	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	3 cut(s)	69, 271, 613
NgoMIV	GCCGGC	1 cut(s)	332
NlaIII	CATG	4 cut(s)	505, 533, 634, 694
NlaIV	GGNNCC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	2 cut(s)	533, 694
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 495
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	136, 290, 381, 443
PflFI	GACNNNGTC	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	48, 268, 352, 398
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	4 cut(s)	330, 416, 425, 437
PsuI	RGATCY	1 cut(s)	613
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	596, 758
SatI	GCNGC	4 cut(s)	47, 267, 351, 397
Sau3AI	GATC	3 cut(s)	69, 271, 613
Sau96I	GGNCC	4 cut(s)	330, 416, 425, 437
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	4 cut(s)	58, 70, 550, 720
SfcI	CTRYAG	2 cut(s)	202, 779
SinI	GGWCC	3 cut(s)	416, 425, 437
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
Sse9I	AATT	4 cut(s)	295, 302, 308, 624
SsiI	CCGC	6 cut(s)	46, 125, 262, 267, 348, 396
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	80, 780
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	3 cut(s)	64, 224, 498
TasI	AATT	4 cut(s)	295, 302, 308, 624
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	3 cut(s)	49, 269, 399
TfiI	GAWTC	4 cut(s)	136, 290, 381, 443
Tru1I	TTAA	2 cut(s)	596, 758
Tru9I	TTAA	2 cut(s)	596, 758
TscAI	CASTG	3 cut(s)	85, 160, 580
TseI	GCWGC	1 cut(s)	350
TspGWI	ACGGA	2 cut(s)	107, 450
TspRI	CASTG	3 cut(s)	85, 160, 580
Tth111I	GACNNNGTC	1 cut(s)	494
Vha464I	CTTAAG	1 cut(s)	757
VpaK11BI	GGWCC	3 cut(s)	416, 425, 437
VspI	ATTAAT	1 cut(s)	596
XceI	RCATGY	2 cut(s)	533, 694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.